2-173338975-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173338975
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173338975
    reference: chr 2
allele count: 3
allele frequency: 2.472880741204788e-5
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.953T>A
  hgvsp: ENSP00000341078.4:p.Val318Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.968T>A
  hgvsp: ENSP00000386896.1:p.Val323Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.626T>A
  hgvsp: ENSP00000413470.1:p.Val209Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1085T>A
  hgvsp: ENSP00000406694.1:p.Val362Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.968T>A
  hgvsp: ENSP00000264107.7:p.Val323Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1085T>A
  hgvsp: ENSP00000364369.2:p.Val362Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.953T>A
  hgvsp: ENSP00000394169.1:p.Val318Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1085T>A
  hgvsp: ENSP00000264106.6:p.Val362Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.611T>A
  hgvsp: ENSP00000386614.1:p.Val204Glu
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val323Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

2-173338975-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173338975
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173338975
    reference: chr 2
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1085T>G
  hgvsp: ENSP00000406694.1:p.Val362Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.953T>G
  hgvsp: ENSP00000394169.1:p.Val318Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.611T>G
  hgvsp: ENSP00000386614.1:p.Val204Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.968T>G
  hgvsp: ENSP00000264107.7:p.Val323Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.968T>G
  hgvsp: ENSP00000386896.1:p.Val323Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.626T>G
  hgvsp: ENSP00000413470.1:p.Val209Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1085T>G
  hgvsp: ENSP00000364369.2:p.Val362Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.953T>G
  hgvsp: ENSP00000341078.4:p.Val318Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1085T>G
  hgvsp: ENSP00000264106.6:p.Val362Gly
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val323Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

2-173338980-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173338980
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173338980
    reference: chr 2
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1090C>G
  hgvsp: ENSP00000406694.1:p.Leu364Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.958C>G
  hgvsp: ENSP00000394169.1:p.Leu320Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.631C>G
  hgvsp: ENSP00000413470.1:p.Leu211Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.616C>G
  hgvsp: ENSP00000386614.1:p.Leu206Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.958C>G
  hgvsp: ENSP00000341078.4:p.Leu320Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1090C>G
  hgvsp: ENSP00000364369.2:p.Leu364Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.973C>G
  hgvsp: ENSP00000386896.1:p.Leu325Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1090C>G
  hgvsp: ENSP00000264106.6:p.Leu364Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.973C>G
  hgvsp: ENSP00000264107.7:p.Leu325Val
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu325Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

2-173338996-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173338996
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173338996
    reference: chr 2
allele count: 11
allele frequency: 9.075757825778452e-5
allele num: 121202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.986+3G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.971+3G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.986+3G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.629+3G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1103+3G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.644+3G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.971+3G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1103+3G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1103+3G>A
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
hgvs: c.986+3G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

2-173338999-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173338999
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173338999
    reference: chr 2
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.986+6A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.986+6A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.971+6A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.629+6A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1103+6A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1103+6A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.971+6A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.644+6A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1103+6A>G
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5770
  bin: 6.75e1
  variant carriers: 0
hgvs: c.986+6A>G
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/2-173339007-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339007
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339007
    reference: chr 2
allele count: 224
allele frequency: 1.853476095123041e-3
allele num: 120854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.986+14A>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.629+14A>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.971+14A>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1103+14A>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1103+14A>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.986+14A>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.644+14A>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1103+14A>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.971+14A>C
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35776
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 12542
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 4
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum

2-173339009-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339009
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339009
    reference: chr 2
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1103+16G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1103+16G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.629+16G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1103+16G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.971+16G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.986+16G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.971+16G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.986+16G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.644+16G>A
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5619
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

2-173339011-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339011
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339011
    reference: chr 2
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1103+18T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.629+18T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.971+18T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1103+18T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.644+18T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.971+18T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.986+18T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.986+18T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1103+18T>G
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

2-173339012-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339012
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339012
    reference: chr 2
allele count: 13
allele frequency: 1.07713977960063e-4
allele num: 120690
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1103+19A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.644+19A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.971+19A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.986+19A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1103+19A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.629+19A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.986+19A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1103+19A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.971+19A>G
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12521
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

2-173339016-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339016
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339016
    reference: chr 2
allele count: 1
allele frequency: 8.292836647703714e-6
allele num: 120586
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1103+23T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.986+23T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.644+23T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.971+23T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1103+23T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.971+23T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.986+23T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1103+23T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.629+23T>C
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3857
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

2-173339017-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339017
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339017
    reference: chr 2
allele count: 2
allele frequency: 1.659172736473594e-5
allele num: 120542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1103+24A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.644+24A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.629+24A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.971+24A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1103+24A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1103+24A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.986+24A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.971+24A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.986+24A>G
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33298
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

2-173339018-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339018
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339018
    reference: chr 2
allele count: 3
allele frequency: 2.488965585902499e-5
allele num: 120532
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.986+25T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1103+25T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.971+25T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.644+25T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1103+25T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.986+25T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1103+25T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.971+25T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.629+25T>C
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

2-173339606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339606
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339606
    reference: chr 2
allele count: 1
allele frequency: 8.390951198227832e-6
allele num: 119176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.972-51C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.645-51C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1104-51C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1104-51C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.972-51C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1104-51C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.987-51C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.630-51C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.987-51C>T
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13469
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3726
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-173339607-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339607
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339607
    reference: chr 2
allele count: 3
allele frequency: 2.514458134272064e-5
allele num: 119310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1104-50T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.987-50T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1104-50T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.972-50T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.987-50T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.972-50T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.630-50T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.645-50T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1104-50T>C
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13803
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

2-173339613-G-GTTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339613
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339616
    reference: chr 2
allele count: 1
allele frequency: 8.370722560771445e-6
allele num: 119464
alternate allele: GTTA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.630-43_630-41dupTTA
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1104-43_1104-41dupTTA
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.972-43_972-41dupTTA
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1104-43_1104-41dupTTA
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.987-43_987-41dupTTA
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.987-43_987-41dupTTA
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.972-43_972-41dupTTA
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1104-43_1104-41dupTTA
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.645-43_645-41dupTTA
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16100
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5600
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ

2-173339615-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339615
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339615
    reference: chr 2
allele count: 26
allele frequency: 2.175040572872225e-4
allele num: 119538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1104-42T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.972-42T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.987-42T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.630-42T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1104-42T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.645-42T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1104-42T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.972-42T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.987-42T>A
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17080
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum

2-173339622-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339622
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339621
    reference: chr 2
allele count: 2
allele frequency: 1.669476952870666e-5
allele num: 119798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1104-33delG
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1104-33delG
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.972-33delG
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.987-33delG
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.645-33delG
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.972-33delG
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1104-33delG
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.630-33delG
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.987-33delG
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20102
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5892
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: TG
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-173339625-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339625
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339625
    reference: chr 2
allele count: 1
allele frequency: 8.342927700188551e-6
allele num: 119862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.987-32T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.987-32T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1104-32T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.972-32T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.630-32T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1104-32T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.645-32T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.972-32T>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1104-32T>G
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6508
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

2-173339629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339629
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339629
    reference: chr 2
allele count: 11
allele frequency: 9.171711107775943e-5
allele num: 119934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.630-28C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.987-28C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.972-28C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.987-28C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1104-28C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.645-28C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1104-28C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.972-28C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1104-28C>T
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15720
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

2-173339630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339630
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339630
    reference: chr 2
allele count: 1
allele frequency: 8.330001332800213e-6
allele num: 120048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1104-27G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1104-27G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1104-27G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.972-27G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.972-27G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.987-27G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.987-27G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.630-27G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.645-27G>A
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21709
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

2-173339657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339657
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339657
    reference: chr 2
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.987G>A
  hgvsp: ENST00000264107.7:c.987G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.987G>A
  hgvsp: ENST00000409080.1:c.987G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.972G>A
  hgvsp: ENST00000343713.4:c.972G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.630G>A
  hgvsp: ENST00000409532.1:c.630G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1104G>A
  hgvsp: ENST00000375221.2:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1104G>A
  hgvsp: ENST00000442250.1:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.645G>A
  hgvsp: ENST00000412899.1:c.645G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.972G>A
  hgvsp: ENST00000458358.1:c.972G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1104G>A
  hgvsp: ENST00000264106.6:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10552
  bin: 9.75e1
  variant carriers: 1
hgvs: c.987G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

2-173339668-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339668
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339668
    reference: chr 2
allele count: 3
allele frequency: 2.473981956424931e-5
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1115T>C
  hgvsp: ENSP00000406694.1:p.Ile372Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.656T>C
  hgvsp: ENSP00000413470.1:p.Ile219Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.641T>C
  hgvsp: ENSP00000386614.1:p.Ile214Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.998T>C
  hgvsp: ENSP00000386896.1:p.Ile333Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.983T>C
  hgvsp: ENSP00000341078.4:p.Ile328Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1115T>C
  hgvsp: ENSP00000364369.2:p.Ile372Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.983T>C
  hgvsp: ENSP00000394169.1:p.Ile328Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1115T>C
  hgvsp: ENSP00000264106.6:p.Ile372Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.998T>C
  hgvsp: ENSP00000264107.7:p.Ile333Thr
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile333Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

2-173339677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339677
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339677
    reference: chr 2
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.992G>A
  hgvsp: ENSP00000394169.1:p.Gly331Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1007G>A
  hgvsp: ENSP00000386896.1:p.Gly336Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1007G>A
  hgvsp: ENSP00000264107.7:p.Gly336Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.665G>A
  hgvsp: ENSP00000413470.1:p.Gly222Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1124G>A
  hgvsp: ENSP00000364369.2:p.Gly375Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.992G>A
  hgvsp: ENSP00000341078.4:p.Gly331Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1124G>A
  hgvsp: ENSP00000406694.1:p.Gly375Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.650G>A
  hgvsp: ENSP00000386614.1:p.Gly217Glu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1124G>A
  hgvsp: ENSP00000264106.6:p.Gly375Glu
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly336Glu
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

2-173339687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339687
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339687
    reference: chr 2
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1002G>A
  hgvsp: ENST00000343713.4:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1134G>A
  hgvsp: ENST00000264106.6:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1017G>A
  hgvsp: ENST00000409080.1:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1134G>A
  hgvsp: ENST00000375221.2:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1134G>A
  hgvsp: ENST00000442250.1:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.675G>A
  hgvsp: ENST00000412899.1:c.675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1017G>A
  hgvsp: ENST00000264107.7:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1002G>A
  hgvsp: ENST00000458358.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.660G>A
  hgvsp: ENST00000409532.1:c.660G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln339Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

2-173339694-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339694
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339694
    reference: chr 2
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1141G>C
  hgvsp: ENSP00000364369.2:p.Asp381His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.667G>C
  hgvsp: ENSP00000386614.1:p.Asp223His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1024G>C
  hgvsp: ENSP00000264107.7:p.Asp342His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1141G>C
  hgvsp: ENSP00000406694.1:p.Asp381His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1009G>C
  hgvsp: ENSP00000394169.1:p.Asp337His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1009G>C
  hgvsp: ENSP00000341078.4:p.Asp337His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1024G>C
  hgvsp: ENSP00000386896.1:p.Asp342His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.682G>C
  hgvsp: ENSP00000413470.1:p.Asp228His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1141G>C
  hgvsp: ENSP00000264106.6:p.Asp381His
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17399
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp342His
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

2-173339696-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339696
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339696
    reference: chr 2
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1026T>C
  hgvsp: ENST00000409080.1:c.1026T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1026T>C
  hgvsp: ENST00000264107.7:c.1026T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1143T>C
  hgvsp: ENST00000264106.6:c.1143T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.669T>C
  hgvsp: ENST00000409532.1:c.669T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000413470
  ensembl transcript: ENST00000412899
  gene symbol: ITGA6
  hgvsc: ENST00000412899.1:c.684T>C
  hgvsp: ENST00000412899.1:c.684T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1143T>C
  hgvsp: ENST00000375221.2:c.1143T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1011T>C
  hgvsp: ENST00000458358.1:c.1011T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1143T>C
  hgvsp: ENST00000442250.1:c.1143T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1011T>C
  hgvsp: ENST00000343713.4:c.1011T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17404
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp342Asp
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

2-173339718-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339718
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339718
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1033G>T
  hgvsp: ENSP00000394169.1:p.Ala345Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1033G>T
  hgvsp: ENSP00000341078.4:p.Ala345Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1048G>T
  hgvsp: ENSP00000386896.1:p.Ala350Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1165G>T
  hgvsp: ENSP00000264106.6:p.Ala389Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1165G>T
  hgvsp: ENSP00000364369.2:p.Ala389Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1165G>T
  hgvsp: ENSP00000406694.1:p.Ala389Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.691G>T
  hgvsp: ENSP00000386614.1:p.Ala231Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1048G>T
  hgvsp: ENSP00000264107.7:p.Ala350Ser
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10566
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala350Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

2-173339720-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339720
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339720
    reference: chr 2
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1050A>G
  hgvsp: ENST00000409080.1:c.1050A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1167A>G
  hgvsp: ENST00000442250.1:c.1167A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1167A>G
  hgvsp: ENST00000264106.6:c.1167A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1167A>G
  hgvsp: ENST00000375221.2:c.1167A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.693A>G
  hgvsp: ENST00000409532.1:c.693A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1050A>G
  hgvsp: ENST00000264107.7:c.1050A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1035A>G
  hgvsp: ENST00000343713.4:c.1035A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1035A>G
  hgvsp: ENST00000458358.1:c.1035A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala350Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

2-173339721-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339721
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339721
    reference: chr 2
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1051G>C
  hgvsp: ENSP00000264107.7:p.Val351Leu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1036G>C
  hgvsp: ENSP00000341078.4:p.Val346Leu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1036G>C
  hgvsp: ENSP00000394169.1:p.Val346Leu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1168G>C
  hgvsp: ENSP00000364369.2:p.Val390Leu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.694G>C
  hgvsp: ENSP00000386614.1:p.Val232Leu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1051G>C
  hgvsp: ENSP00000386896.1:p.Val351Leu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1168G>C
  hgvsp: ENSP00000264106.6:p.Val390Leu
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1168G>C
  hgvsp: ENSP00000406694.1:p.Val390Leu
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6639
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3097
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val351Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

2-173339726-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339726
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339726
    reference: chr 2
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1056T>C
  hgvsp: ENST00000409080.1:c.1056T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1173T>C
  hgvsp: ENST00000375221.2:c.1173T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1173T>C
  hgvsp: ENST00000442250.1:c.1173T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1041T>C
  hgvsp: ENST00000343713.4:c.1041T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.699T>C
  hgvsp: ENST00000409532.1:c.699T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1041T>C
  hgvsp: ENST00000458358.1:c.1041T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1056T>C
  hgvsp: ENST00000264107.7:c.1056T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1173T>C
  hgvsp: ENST00000264106.6:c.1173T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10568
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr352Tyr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

2-173339733-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339733
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339733
    reference: chr 2
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1180A>G
  hgvsp: ENSP00000364369.2:p.Met394Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1180A>G
  hgvsp: ENSP00000406694.1:p.Met394Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1063A>G
  hgvsp: ENSP00000264107.7:p.Met355Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1048A>G
  hgvsp: ENSP00000394169.1:p.Met350Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1180A>G
  hgvsp: ENSP00000264106.6:p.Met394Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1048A>G
  hgvsp: ENSP00000341078.4:p.Met350Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1063A>G
  hgvsp: ENSP00000386896.1:p.Met355Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.706A>G
  hgvsp: ENSP00000386614.1:p.Met236Val
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10569
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Met355Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

2-173339745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339745
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339745
    reference: chr 2
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.718G>A
  hgvsp: ENSP00000386614.1:p.Gly240Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1192G>A
  hgvsp: ENSP00000264106.6:p.Gly398Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1075G>A
  hgvsp: ENSP00000386896.1:p.Gly359Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1192G>A
  hgvsp: ENSP00000406694.1:p.Gly398Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1075G>A
  hgvsp: ENSP00000264107.7:p.Gly359Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1060G>A
  hgvsp: ENSP00000394169.1:p.Gly354Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1192G>A
  hgvsp: ENSP00000364369.2:p.Gly398Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1060G>A
  hgvsp: ENSP00000341078.4:p.Gly354Ser
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10568
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly359Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-173339752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339752
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339752
    reference: chr 2
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.725G>A
  hgvsp: ENSP00000386614.1:p.Trp242Ter
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1082G>A
  hgvsp: ENSP00000386896.1:p.Trp361Ter
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1067G>A
  hgvsp: ENSP00000394169.1:p.Trp356Ter
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1082G>A
  hgvsp: ENSP00000264107.7:p.Trp361Ter
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1199G>A
  hgvsp: ENSP00000364369.2:p.Trp400Ter
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1199G>A
  hgvsp: ENSP00000406694.1:p.Trp400Ter
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1067G>A
  hgvsp: ENSP00000341078.4:p.Trp356Ter
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1199G>A
  hgvsp: ENSP00000264106.6:p.Trp400Ter
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp361Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-173339766-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339766
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339766
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1081C>A
  hgvsp: ENSP00000341078.4:p.Pro361Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1081C>A
  hgvsp: ENSP00000394169.1:p.Pro361Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1213C>A
  hgvsp: ENSP00000364369.2:p.Pro405Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.739C>A
  hgvsp: ENSP00000386614.1:p.Pro247Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1096C>A
  hgvsp: ENSP00000386896.1:p.Pro366Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1213C>A
  hgvsp: ENSP00000264106.6:p.Pro405Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1213C>A
  hgvsp: ENSP00000406694.1:p.Pro405Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1096C>A
  hgvsp: ENSP00000264107.7:p.Pro366Thr
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro366Thr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

2-173339769-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339769
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339769
    reference: chr 2
allele count: 4
allele frequency: 3.295707341188102e-5
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1216A>G
  hgvsp: ENSP00000364369.2:p.Ile406Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1099A>G
  hgvsp: ENSP00000264107.7:p.Ile367Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1084A>G
  hgvsp: ENSP00000394169.1:p.Ile362Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1216A>G
  hgvsp: ENSP00000406694.1:p.Ile406Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1099A>G
  hgvsp: ENSP00000386896.1:p.Ile367Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1084A>G
  hgvsp: ENSP00000341078.4:p.Ile362Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1216A>G
  hgvsp: ENSP00000264106.6:p.Ile406Val
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.742A>G
  hgvsp: ENSP00000386614.1:p.Ile248Val
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22283
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile367Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-173339772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339772
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339772
    reference: chr 2
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1102C>T
  hgvsp: ENSP00000386896.1:p.Arg368Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1219C>T
  hgvsp: ENSP00000406694.1:p.Arg407Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.745C>T
  hgvsp: ENSP00000386614.1:p.Arg249Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1087C>T
  hgvsp: ENSP00000394169.1:p.Arg363Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1087C>T
  hgvsp: ENSP00000341078.4:p.Arg363Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1102C>T
  hgvsp: ENSP00000264107.7:p.Arg368Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1219C>T
  hgvsp: ENSP00000264106.6:p.Arg407Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1219C>T
  hgvsp: ENSP00000364369.2:p.Arg407Cys
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32743
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10574
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg368Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

2-173339773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339773
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339773
    reference: chr 2
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1088G>A
  hgvsp: ENSP00000394169.1:p.Arg363His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.746G>A
  hgvsp: ENSP00000386614.1:p.Arg249His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1220G>A
  hgvsp: ENSP00000364369.2:p.Arg407His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1103G>A
  hgvsp: ENSP00000386896.1:p.Arg368His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1220G>A
  hgvsp: ENSP00000406694.1:p.Arg407His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1088G>A
  hgvsp: ENSP00000341078.4:p.Arg363His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1103G>A
  hgvsp: ENSP00000264107.7:p.Arg368His
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1220G>A
  hgvsp: ENSP00000264106.6:p.Arg407His
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17589
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg368His
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

2-173339776-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339776
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339776
    reference: chr 2
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1106T>G
  hgvsp: ENSP00000264107.7:p.Leu369Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1223T>G
  hgvsp: ENSP00000364369.2:p.Leu408Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1091T>G
  hgvsp: ENSP00000341078.4:p.Leu364Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1106T>G
  hgvsp: ENSP00000386896.1:p.Leu369Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1223T>G
  hgvsp: ENSP00000264106.6:p.Leu408Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.749T>G
  hgvsp: ENSP00000386614.1:p.Leu250Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1091T>G
  hgvsp: ENSP00000394169.1:p.Leu364Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1223T>G
  hgvsp: ENSP00000406694.1:p.Leu408Arg
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17598
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32772
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10578
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu369Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

2-173339790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339790
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339790
    reference: chr 2
allele count: 2
allele frequency: 1.648016612007449e-5
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1237G>A
  hgvsp: ENSP00000406694.1:p.Asp413Asn
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1105G>A
  hgvsp: ENSP00000341078.4:p.Asp369Asn
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.763G>A
  hgvsp: ENSP00000386614.1:p.Asp255Asn
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1105G>A
  hgvsp: ENSP00000394169.1:p.Asp369Asn
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1237G>A
  hgvsp: ENSP00000364369.2:p.Asp413Asn
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1120G>A
  hgvsp: ENSP00000264107.7:p.Asp374Asn
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1120G>A
  hgvsp: ENSP00000386896.1:p.Asp374Asn
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1237G>A
  hgvsp: ENSP00000264106.6:p.Asp413Asn
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp374Asn
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

2-173339807-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339807
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339807
    reference: chr 2
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1122T>G
  hgvsp: ENSP00000394169.1:p.Ile374Met
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1254T>G
  hgvsp: ENSP00000364369.2:p.Ile418Met
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1254T>G
  hgvsp: ENSP00000406694.1:p.Ile418Met
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1137T>G
  hgvsp: ENSP00000264107.7:p.Ile379Met
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.780T>G
  hgvsp: ENSP00000386614.1:p.Ile260Met
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1137T>G
  hgvsp: ENSP00000386896.1:p.Ile379Met
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1254T>G
  hgvsp: ENSP00000264106.6:p.Ile418Met
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1122T>G
  hgvsp: ENSP00000341078.4:p.Ile374Met
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile379Met
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

2-173339808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339808
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339808
    reference: chr 2
allele count: 34072
allele frequency: 2.809598416755999e-1
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1123G>A
  hgvsp: ENSP00000394169.1:p.Ala375Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1255G>A
  hgvsp: ENSP00000406694.1:p.Ala419Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1138G>A
  hgvsp: ENSP00000386896.1:p.Ala380Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1255G>A
  hgvsp: ENSP00000364369.2:p.Ala419Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1123G>A
  hgvsp: ENSP00000341078.4:p.Ala375Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.781G>A
  hgvsp: ENSP00000386614.1:p.Ala261Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1255G>A
  hgvsp: ENSP00000264106.6:p.Ala419Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1138G>A
  hgvsp: ENSP00000264107.7:p.Ala380Thr
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11677
  bin: 2.75e1
  variant carriers: 508
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 5.75e1
  variant carriers: 2678
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.75e1
  variant carriers: 720
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 9.75e1
  variant carriers: 5472
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 5.25e1
  variant carriers: 2800
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 6.25e1
  variant carriers: 2520
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.25e1
  variant carriers: 593
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 6.75e1
  variant carriers: 2054
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 4.75e1
  variant carriers: 2675
genotype depth: GenotypeDepth
  all individuals: 12714
  bin: 2.25e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 3.25e1
  variant carriers: 1083
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 3.75e1
  variant carriers: 1533
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 8.25e1
  variant carriers: 944
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 7.25e1
  variant carriers: 1688
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.75e1
  variant carriers: 1292
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 4.25e1
  variant carriers: 2269
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 7
hgvs: p.Ala380Thr
num of homozygotes: 5014
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-173339821-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339821
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339821
    reference: chr 2
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1136T>C
  hgvsp: ENSP00000394169.1:p.Ile379Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1136T>C
  hgvsp: ENSP00000341078.4:p.Ile379Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.794T>C
  hgvsp: ENSP00000386614.1:p.Ile265Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1151T>C
  hgvsp: ENSP00000386896.1:p.Ile384Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1268T>C
  hgvsp: ENSP00000364369.2:p.Ile423Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1268T>C
  hgvsp: ENSP00000406694.1:p.Ile423Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1151T>C
  hgvsp: ENSP00000264107.7:p.Ile384Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1268T>C
  hgvsp: ENSP00000264106.6:p.Ile423Thr
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6637
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile384Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

2-173339827-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339827
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339827
    reference: chr 2
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1274A>G
  hgvsp: ENSP00000364369.2:p.Asp425Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1157A>G
  hgvsp: ENSP00000264107.7:p.Asp386Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1142A>G
  hgvsp: ENSP00000341078.4:p.Asp381Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1274A>G
  hgvsp: ENSP00000406694.1:p.Asp425Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.800A>G
  hgvsp: ENSP00000386614.1:p.Asp267Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1157A>G
  hgvsp: ENSP00000386896.1:p.Asp386Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1274A>G
  hgvsp: ENSP00000264106.6:p.Asp425Gly
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1142A>G
  hgvsp: ENSP00000394169.1:p.Asp381Gly
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp386Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

2-173339828-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339828
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339828
    reference: chr 2
allele count: 1
allele frequency: 8.263779852904718e-6
allele num: 121010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1275T>C
  hgvsp: ENST00000442250.1:c.1275T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1158T>C
  hgvsp: ENST00000264107.7:c.1158T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1158T>C
  hgvsp: ENST00000409080.1:c.1158T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.801T>C
  hgvsp: ENST00000409532.1:c.801T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1143T>C
  hgvsp: ENST00000343713.4:c.1143T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1143T>C
  hgvsp: ENST00000458358.1:c.1143T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1275T>C
  hgvsp: ENST00000264106.6:c.1275T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1275T>C
  hgvsp: ENST00000375221.2:c.1275T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42929
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp386Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

2-173339859-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339859
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339859
    reference: chr 2
allele count: 1
allele frequency: 8.385744234800838e-6
allele num: 119250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1297+9T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.823+9T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1165+9T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1297+9T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1180+9T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1165+9T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1180+9T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1297+9T>C
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23766
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4909
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

2-173339866-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339866
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339866
    reference: chr 2
allele count: 1
allele frequency: 8.447801037389967e-6
allele num: 118374
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1180+16T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1165+16T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1297+16T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1165+16T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.823+16T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1297+16T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1180+16T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1297+16T>C
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37505
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

2-173339871-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339871
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339871
    reference: chr 2
allele count: 1
allele frequency: 8.504703100814751e-6
allele num: 117582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1297+21T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1297+21T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1165+21T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1165+21T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1180+21T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1180+21T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1297+21T>C
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.823+21T>C
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5508
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

2-173339893-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173339893
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173339893
    reference: chr 2
allele count: 1
allele frequency: 8.726764988218868e-6
allele num: 114590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1180+43T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1165+43T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1297+43T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1180+43T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1297+43T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1165+43T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.823+43T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1297+43T>A
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8755
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4903
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13769
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9712
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

2-173340288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340288
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340288
    reference: chr 2
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1181-37C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1298-37C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1166-37C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1181-37C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1298-37C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1166-37C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1298-37C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.824-37C>T
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

2-173340289-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340289
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340289
    reference: chr 2
allele count: 8
allele frequency: 6.59228373189182e-5
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1298-36G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1181-36G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1166-36G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1298-36G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1166-36G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1181-36G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.824-36G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1298-36G>A
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3828
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31841
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

2-173340291-TTGTTAAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340291
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340283
    reference: chr 2
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8452
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4648
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: TTGTTAAAA
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

2-173340304-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340304
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340304
    reference: chr 2
allele count: 3
allele frequency: 2.472024918011174e-5
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1166-21A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1298-21A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1181-21A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.824-21A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1298-21A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1298-21A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1166-21A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1181-21A>G
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7802
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4648
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3897
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

2-173340308-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340308
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340308
    reference: chr 2
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1166-17T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.824-17T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1298-17T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1181-17T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1298-17T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1298-17T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1166-17T>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1181-17T>A
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

2-173340312-ATGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340312
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340309
    reference: chr 2
allele count: 7
allele frequency: 5.767677932864229e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1298-9_1298-7delTGT
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1181-9_1181-7delTGT
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1298-9_1298-7delTGT
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.824-9_824-7delTGT
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1181-9_1181-7delTGT
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1166-9_1166-7delTGT
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1298-9_1298-7delTGT
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1166-9_1166-7delTGT
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3852
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: ATGT
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

2-173340328-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340328
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340328
    reference: chr 2
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1301T>C
  hgvsp: ENSP00000364369.2:p.Ile434Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1184T>C
  hgvsp: ENSP00000386896.1:p.Ile395Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1184T>C
  hgvsp: ENSP00000264107.7:p.Ile395Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1169T>C
  hgvsp: ENSP00000394169.1:p.Ile390Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1301T>C
  hgvsp: ENSP00000264106.6:p.Ile434Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.827T>C
  hgvsp: ENSP00000386614.1:p.Ile276Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1169T>C
  hgvsp: ENSP00000341078.4:p.Ile390Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1301T>C
  hgvsp: ENSP00000406694.1:p.Ile434Thr
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4650
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile395Thr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

2-173340341-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340341
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340341
    reference: chr 2
allele count: 2
allele frequency: 1.648451280022419e-5
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1182T>G
  hgvsp: ENST00000458358.1:c.1182T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1314T>G
  hgvsp: ENST00000264106.6:c.1314T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1314T>G
  hgvsp: ENST00000375221.2:c.1314T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1182T>G
  hgvsp: ENST00000343713.4:c.1182T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1314T>G
  hgvsp: ENST00000442250.1:c.1314T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1197T>G
  hgvsp: ENST00000264107.7:c.1197T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1197T>G
  hgvsp: ENST00000409080.1:c.1197T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.840T>G
  hgvsp: ENST00000409532.1:c.840T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala399Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

2-173340344-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340344
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340344
    reference: chr 2
allele count: 3
allele frequency: 2.473043822336532e-5
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1185G>A
  hgvsp: ENST00000458358.1:c.1185G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.843G>A
  hgvsp: ENST00000409532.1:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1200G>A
  hgvsp: ENST00000409080.1:c.1200G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1317G>A
  hgvsp: ENST00000442250.1:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1200G>A
  hgvsp: ENST00000264107.7:c.1200G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1317G>A
  hgvsp: ENST00000264106.6:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1185G>A
  hgvsp: ENST00000343713.4:c.1185G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1317G>A
  hgvsp: ENST00000375221.2:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro400Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

2-173340346-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340346
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340346
    reference: chr 2
allele count: 2
allele frequency: 1.648777431534517e-5
allele num: 121302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1202A>G
  hgvsp: ENSP00000264107.7:p.Tyr401Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1319A>G
  hgvsp: ENSP00000406694.1:p.Tyr440Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1319A>G
  hgvsp: ENSP00000264106.6:p.Tyr440Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1187A>G
  hgvsp: ENSP00000341078.4:p.Tyr396Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1319A>G
  hgvsp: ENSP00000364369.2:p.Tyr440Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1202A>G
  hgvsp: ENSP00000386896.1:p.Tyr401Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1187A>G
  hgvsp: ENSP00000394169.1:p.Tyr396Cys
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.845A>G
  hgvsp: ENSP00000386614.1:p.Tyr282Cys
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr401Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-173340350-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340350
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340350
    reference: chr 2
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1323T>C
  hgvsp: ENST00000264106.6:c.1323T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1191T>C
  hgvsp: ENST00000458358.1:c.1191T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1206T>C
  hgvsp: ENST00000409080.1:c.1206T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1323T>C
  hgvsp: ENST00000442250.1:c.1323T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1191T>C
  hgvsp: ENST00000343713.4:c.1191T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1323T>C
  hgvsp: ENST00000375221.2:c.1323T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1206T>C
  hgvsp: ENST00000264107.7:c.1206T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.849T>C
  hgvsp: ENST00000409532.1:c.849T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8441
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp402Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-173340358-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340358
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340357
    reference: chr 2
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1334delA
  hgvsp: ENSP00000264106.6:p.Lys445ArgfsTer12
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1217delA
  hgvsp: ENSP00000386896.1:p.Lys406ArgfsTer12
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1202delA
  hgvsp: ENSP00000394169.1:p.Lys401ArgfsTer12
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1334delA
  hgvsp: ENSP00000406694.1:p.Lys445ArgfsTer12
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1334delA
  hgvsp: ENSP00000364369.2:p.Lys445ArgfsTer12
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1217delA
  hgvsp: ENSP00000264107.7:p.Lys406ArgfsTer12
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1202delA
  hgvsp: ENSP00000341078.4:p.Lys401ArgfsTer12
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.860delA
  hgvsp: ENSP00000386614.1:p.Lys287ArgfsTer12
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4627
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3807
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys406ArgfsTer12
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: GA
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

2-173340361-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340361
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340361
    reference: chr 2
allele count: 2
allele frequency: 1.649947201689546e-5
allele num: 121216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1334A>G
  hgvsp: ENSP00000264106.6:p.Lys445Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1334A>G
  hgvsp: ENSP00000406694.1:p.Lys445Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1217A>G
  hgvsp: ENSP00000386896.1:p.Lys406Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1334A>G
  hgvsp: ENSP00000364369.2:p.Lys445Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.860A>G
  hgvsp: ENSP00000386614.1:p.Lys287Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1202A>G
  hgvsp: ENSP00000394169.1:p.Lys401Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1217A>G
  hgvsp: ENSP00000264107.7:p.Lys406Arg
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1202A>G
  hgvsp: ENSP00000341078.4:p.Lys401Arg
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31835
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Lys406Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-173340361-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340361
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340361
    reference: chr 2
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1217A>C
  hgvsp: ENSP00000386896.1:p.Lys406Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1217A>C
  hgvsp: ENSP00000264107.7:p.Lys406Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1334A>C
  hgvsp: ENSP00000406694.1:p.Lys445Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1202A>C
  hgvsp: ENSP00000341078.4:p.Lys401Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.860A>C
  hgvsp: ENSP00000386614.1:p.Lys287Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1334A>C
  hgvsp: ENSP00000364369.2:p.Lys445Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1334A>C
  hgvsp: ENSP00000264106.6:p.Lys445Thr
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1202A>C
  hgvsp: ENSP00000394169.1:p.Lys401Thr
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys406Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

2-173340368-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340368
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340368
    reference: chr 2
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1224T>C
  hgvsp: ENST00000264107.7:c.1224T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1341T>C
  hgvsp: ENST00000375221.2:c.1341T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1341T>C
  hgvsp: ENST00000264106.6:c.1341T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1341T>C
  hgvsp: ENST00000442250.1:c.1341T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.867T>C
  hgvsp: ENST00000409532.1:c.867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1209T>C
  hgvsp: ENST00000343713.4:c.1209T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1224T>C
  hgvsp: ENST00000409080.1:c.1224T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1209T>C
  hgvsp: ENST00000458358.1:c.1209T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe408Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

2-173340377-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340377
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340377
    reference: chr 2
allele count: 5
allele frequency: 4.129842240026431e-5
allele num: 121070
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1218T>C
  hgvsp: ENST00000343713.4:c.1218T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1350T>C
  hgvsp: ENST00000264106.6:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1233T>C
  hgvsp: ENST00000409080.1:c.1233T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1350T>C
  hgvsp: ENST00000442250.1:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1233T>C
  hgvsp: ENST00000264107.7:c.1233T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1350T>C
  hgvsp: ENST00000375221.2:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1218T>C
  hgvsp: ENST00000458358.1:c.1218T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.876T>C
  hgvsp: ENST00000409532.1:c.876T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His411His
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-173340408-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340408
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340408
    reference: chr 2
allele count: 1
allele frequency: 8.288025460814215e-6
allele num: 120656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1249A>T
  hgvsp: ENSP00000394169.1:p.Thr417Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1381A>T
  hgvsp: ENSP00000264106.6:p.Thr461Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1264A>T
  hgvsp: ENSP00000264107.7:p.Thr422Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1381A>T
  hgvsp: ENSP00000364369.2:p.Thr461Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.907A>T
  hgvsp: ENSP00000386614.1:p.Thr303Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1264A>T
  hgvsp: ENSP00000386896.1:p.Thr422Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1249A>T
  hgvsp: ENSP00000341078.4:p.Thr417Ser
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1381A>T
  hgvsp: ENSP00000406694.1:p.Thr461Ser
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3883
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr422Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

2-173340417-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340417
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340417
    reference: chr 2
allele count: 1
allele frequency: 8.295450774795103e-6
allele num: 120548
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1386+4A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1269+4A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1254+4A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1269+4A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1386+4A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1254+4A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1386+4A>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.912+4A>G
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7827
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1269+4A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

2-173340418-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340418
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340418
    reference: chr 2
allele count: 1
allele frequency: 8.296827293243064e-6
allele num: 120528
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1269+5C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1386+5C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1254+5C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1269+5C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1386+5C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.912+5C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1386+5C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1254+5C>G
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1269+5C>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

2-173340427-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340427
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340427
    reference: chr 2
allele count: 25
allele frequency: 2.076067098488623e-4
allele num: 120420
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1386+14C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1269+14C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1254+14C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1254+14C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1269+14C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.912+14C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1386+14C>G
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1386+14C>G
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7758
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

2-173340427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340427
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340427
    reference: chr 2
allele count: 11
allele frequency: 9.134695233349942e-5
allele num: 120420
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1269+14C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1386+14C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1386+14C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1254+14C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1386+14C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1254+14C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1269+14C>T
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.912+14C>T
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

2-173340428-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340428
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 173340428
    reference: chr 2
allele count: 6
allele frequency: 4.983968235509113e-5
allele num: 120386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000364369
  ensembl transcript: ENST00000375221
  gene symbol: ITGA6
  hgvsc: ENST00000375221.2:c.1386+15G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264107
  ensembl transcript: ENST00000264107
  gene symbol: ITGA6
  hgvsc: ENST00000264107.7:c.1269+15G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000394169
  ensembl transcript: ENST00000458358
  gene symbol: ITGA6
  hgvsc: ENST00000458358.1:c.1254+15G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386896
  ensembl transcript: ENST00000409080
  gene symbol: ITGA6
  hgvsc: ENST00000409080.1:c.1269+15G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000406694
  ensembl transcript: ENST00000442250
  gene symbol: ITGA6
  hgvsc: ENST00000442250.1:c.1386+15G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000386614
  ensembl transcript: ENST00000409532
  gene symbol: ITGA6
  hgvsc: ENST00000409532.1:c.912+15G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000341078
  ensembl transcript: ENST00000343713
  gene symbol: ITGA6
  hgvsc: ENST00000343713.4:c.1254+15G>A
  variant of: http://identifiers.org/hgnc/6142
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091409
  ensembl protein: ENSP00000264106
  ensembl transcript: ENST00000264106
  gene symbol: ITGA6
  hgvsc: ENST00000264106.6:c.1386+15G>A
  variant of: http://identifiers.org/hgnc/6142
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4539
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

2-173340430-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 173340430
    reference: chr 2
allele count: 15
allele frequency: 1.24632334612892e-4
allele num: 120354
alternate allele: C
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43923
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3882
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5849
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.459e0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

FS
type: SiteQuality
SIO_000300: 6.137e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

DP
type: SiteQuality
SIO_000300: 1.609416e6

QD
type: SiteQuality
SIO_000300: 1.005e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.545e0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5849
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3882
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43923
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.545e0

FS
type: SiteQuality
SIO_000300: 6.137e0

QD
type: SiteQuality
SIO_000300: 1.005e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.459e0

DP
type: SiteQuality
SIO_000300: 1.609416e6

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5883
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3881
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.585e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.393e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.491e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e0

DP
type: SiteQuality
SIO_000300: 1.606262e6

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5813
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3883
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 43614
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.650610725968608e-4
allele num: 66642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

DP
type: SiteQuality
SIO_000300: 1.601528e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.907e0

VQSLOD
type: SiteQuality
SIO_000300: 5.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.7e-1

QD
type: SiteQuality
SIO_000300: 1.334e1

GenotypeQuality
all individuals: 3875
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1406
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.271e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: -5.84e-1

DP
type: SiteQuality
SIO_000300: 1.598036e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.587e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 570
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5675
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4035
bin: 9.75e1
variant carriers: 218

GenotypeQuality
all individuals: 365
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 41206
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.225570458108344e-4
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.353872074132018e-4
allele num: 66476
num of homozygotes: 0

African
type: Population
allele count: 204
allele frequency: 1.968351987649556e-2
allele num: 10364
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.433386056697895e-4
allele num: 16438
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

DP
type: SiteQuality
SIO_000300: 1.590572e6

QD
type: SiteQuality
SIO_000300: 1.344e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.5e0

GenotypeQuality
all individuals: 1666
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 399
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40564
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 9.409999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

DP
type: SiteQuality
SIO_000300: 1.579825e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

QD
type: SiteQuality
SIO_000300: 1.011e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

GenotypeQuality
all individuals: 595
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5588
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506432466632521e-5
allele num: 66382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

FS
type: SiteQuality
SIO_000300: 4.059e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.401e1

DP
type: SiteQuality
SIO_000300: 1.57523e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.379999999999999e-1

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40301
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 9.75e1
variant carriers: 13

South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.807610038261079e-4
allele num: 66386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

FS
type: SiteQuality
SIO_000300: 9.83e-1

DP
type: SiteQuality
SIO_000300: 1.575295e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.433e1

GenotypeQuality
all individuals: 1648
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39173
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507249871883761e-5
allele num: 66346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.538e0

DP
type: SiteQuality
SIO_000300: 1.563574e6

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 4.21e0

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

VQSLOD
type: SiteQuality
SIO_000300: -6.852e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 9.23e0

GenotypeQuality
all individuals: 1648
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5475
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 391
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38226
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.932740626207963e-4
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.76e-1

QD
type: SiteQuality
SIO_000300: 1.68e1

DP
type: SiteQuality
SIO_000300: 1.556817e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

GenotypeQuality
all individuals: 278
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38446
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 597
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.523795162555039e-5
allele num: 66316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.816e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.48e1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

DP
type: SiteQuality
SIO_000300: 1.556554e6

GenotypeQuality
all individuals: 2034
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3898
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10396
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16937
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2629
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529239050648397e-5
allele num: 65392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.71e-1

DP
type: SiteQuality
SIO_000300: 1.906839e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.357e0

VQSLOD
type: SiteQuality
SIO_000300: -1.199e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.71e-1

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

GenotypeQuality
all individuals: 2026
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3652
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18191
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3710
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10398
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.8310546875e-4
allele num: 16384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.379e1

VQSLOD
type: SiteQuality
SIO_000300: 4.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.657e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

DP
type: SiteQuality
SIO_000300: 1.908516e6

GenotypeQuality
all individuals: 22013
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10405
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 960
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525832341542311e-5
allele num: 65538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.109e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.585e0

QD
type: SiteQuality
SIO_000300: 2.772e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.359e-1

DP
type: SiteQuality
SIO_000300: 1.924735e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.506e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.802e1

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10419
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 5695
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.201317113326626e-4
allele num: 65598
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.053248656570591e-4
allele num: 16376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.123e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.011e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

QD
type: SiteQuality
SIO_000300: 1.304e1

DP
type: SiteQuality
SIO_000300: 1.931705e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27799
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10423
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.041640052316209e-5
allele num: 65754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.21e-1

QD
type: SiteQuality
SIO_000300: 1.429e1

MQ
type: SiteQuality
SIO_000300: 6.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 6.773e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.7e-1

DP
type: SiteQuality
SIO_000300: 1.962029e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

GenotypeQuality
all individuals: 723
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5933
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10428
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.883e1

QD
type: SiteQuality
SIO_000300: 1.351e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.797e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 6.405e0

DP
type: SiteQuality
SIO_000300: 1.97232e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 402
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10450
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6029
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29702
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.33590282644242e-4
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65830
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.847924659923265e-4
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

DP
type: SiteQuality
SIO_000300: 1.992297e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.737e0

QD
type: SiteQuality
SIO_000300: 1.2e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.844e0

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10473
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6156
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517128379403465e-5
allele num: 65914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

FS
type: SiteQuality
SIO_000300: 1.0671e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.12e-1

QD
type: SiteQuality
SIO_000300: 1.591e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.893999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.999062e6

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2368
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32767
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2330
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6568
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

DP
type: SiteQuality
SIO_000300: 2.04023e6

QD
type: SiteQuality
SIO_000300: 1.105e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.897e1

VQSLOD
type: SiteQuality
SIO_000300: -1.132e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10563
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2396
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6588
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32933
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.2e-1

DP
type: SiteQuality
SIO_000300: 2.043759e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.221e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.588e1

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10562
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6596
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 4.175e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.553e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.053e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

DP
type: SiteQuality
SIO_000300: 2.045188e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6612
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.046078e6

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.066e0

FS
type: SiteQuality
SIO_000300: 2.767e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.207e0

VQSLOD
type: SiteQuality
SIO_000300: -6.882e-1

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10563
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32974
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6619
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 3.568e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.63e-1

QD
type: SiteQuality
SIO_000300: 1.153e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.008e-1

DP
type: SiteQuality
SIO_000300: 2.046232e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6619
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32987
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.171e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

MQRankSum
type: SiteQuality
SIO_000300: 8.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 2.046239e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32934
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6636
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 8.48e0

VQSLOD
type: SiteQuality
SIO_000300: 4.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.314e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

DP
type: SiteQuality
SIO_000300: 2.047191e6

FS
type: SiteQuality
SIO_000300: 2.407e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 2408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10567
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.892e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.5e0

DP
type: SiteQuality
SIO_000300: 2.047203e6

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.537e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -3.64e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10568
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1453
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 2.443e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.047431e6

QD
type: SiteQuality
SIO_000300: 1.41e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32925
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6641
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.284e0

DP
type: SiteQuality
SIO_000300: 2.047253e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.716e0

MQRankSum
type: SiteQuality
SIO_000300: -4.68e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32909
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.047464e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

FS
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.13e-2

QD
type: SiteQuality
SIO_000300: 1.043e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.809e0

QD
type: SiteQuality
SIO_000300: 1.774e1

VQSLOD
type: SiteQuality
SIO_000300: -1.075e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

DP
type: SiteQuality
SIO_000300: 2.047984e6

FS
type: SiteQuality
SIO_000300: 1.0186e1

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.846e0

GenotypeQuality
all individuals: 6628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10568
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.389e0

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.818e0

VQSLOD
type: SiteQuality
SIO_000300: -1.177e0

QD
type: SiteQuality
SIO_000300: 1.111e1

FS
type: SiteQuality
SIO_000300: 5.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e0

DP
type: SiteQuality
SIO_000300: 2.048211e6

MQ
type: SiteQuality
SIO_000300: 5.903e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10571
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3110
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32800
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.341e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.449e1

DP
type: SiteQuality
SIO_000300: 2.048447e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e-1

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32745
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10575
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.845414343395501e-4
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

DP
type: SiteQuality
SIO_000300: 2.048536e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.573e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6645
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.048747e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.161e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.888e1

VQSLOD
type: SiteQuality
SIO_000300: -1.991e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

FS
type: SiteQuality
SIO_000300: 8.561999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 2.764e1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2415
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32736
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10577
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99805126667666e-5
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

DP
type: SiteQuality
SIO_000300: 2.048866e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

FS
type: SiteQuality
SIO_000300: 2.769e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.048752e6

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.023e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.045e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10578
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.049042e6

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

FS
type: SiteQuality
SIO_000300: 1.155e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.033e0

QD
type: SiteQuality
SIO_000300: 1.259e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10589
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.162e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 2.654e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 2.049754e6

VQSLOD
type: SiteQuality
SIO_000300: -1.494e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 7.31e0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 10

GenotypeQuality
all individuals: 687
bin: 7.25e1
variant carriers: 32

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 8

GenotypeQuality
all individuals: 31055
bin: 9.75e1
variant carriers: 28609

GenotypeQuality
all individuals: 3083
bin: 6.75e1
variant carriers: 32

GenotypeQuality
all individuals: 469
bin: 9.25e1
variant carriers: 88

GenotypeQuality
all individuals: 23346
bin: 6.25e1
variant carriers: 38

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 597
bin: 8.25e1
variant carriers: 68

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 10

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 16

GenotypeQuality
all individuals: 821
bin: 7.75e1
variant carriers: 58

European (Non-Finnish)
type: Population
allele count: 19514
allele frequency: 2.927744103702815e-1
allele num: 66652
num of homozygotes: 2867

European (Finnish)
type: Population
allele count: 1800
allele frequency: 2.727272727272727e-1
allele num: 6600
num of homozygotes: 258

African
type: Population
allele count: 3482
allele frequency: 3.350654349499615e-1
allele num: 10392
num of homozygotes: 580

Latino
type: Population
allele count: 2998
allele frequency: 2.593425605536332e-1
allele num: 11560
num of homozygotes: 402

South Asian
type: Population
allele count: 5211
allele frequency: 3.155886627906977e-1
allele num: 16512
num of homozygotes: 821

Other
type: Population
allele count: 280
allele frequency: 3.083700440528634e-1
allele num: 908
num of homozygotes: 45

East Asian
type: Population
allele count: 787
allele frequency: 9.102475133009484e-2
allele num: 8646
num of homozygotes: 41

FS
type: SiteQuality
SIO_000300: 5.42e-1

QD
type: SiteQuality
SIO_000300: 1.608e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.98e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 2.994673e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.183e0

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
all individuals: 42919
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4951
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1415
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.52e1

DP
type: SiteQuality
SIO_000300: 1.803112e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.628e0

MQ
type: SiteQuality
SIO_000300: 5.223e1

MQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.21e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.628e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.34e-1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4937
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6611
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42885
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.800333e6

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.18e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

FS
type: SiteQuality
SIO_000300: 1.386e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6610
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4935
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.721952167995334e-5
allele num: 10286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e0

DP
type: SiteQuality
SIO_000300: 1.800215e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.781e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 1.69e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 804
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40316
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527697149317119e-5
allele num: 65458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.433e0

MQRankSum
type: SiteQuality
SIO_000300: -1.008e0

FS
type: SiteQuality
SIO_000300: 1.944e0

QD
type: SiteQuality
SIO_000300: 2.562e1

MQ
type: SiteQuality
SIO_000300: 5.765e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

VQSLOD
type: SiteQuality
SIO_000300: -2.213e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.55e-1

DP
type: SiteQuality
SIO_000300: 1.74761e6

GenotypeQuality
all individuals: 399
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5847
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4908
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539124545958259e-5
allele num: 64972
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.415e0

MQ
type: SiteQuality
SIO_000300: 5.893e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

QD
type: SiteQuality
SIO_000300: 1.057e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.02e-1

DP
type: SiteQuality
SIO_000300: 1.708699e6

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6470
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4906
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.530924678505818e-4
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64522
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

FS
type: SiteQuality
SIO_000300: 9.961e0

VQSLOD
type: SiteQuality
SIO_000300: -1.205e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.059e1

DP
type: SiteQuality
SIO_000300: 1.654935e6

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6275
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.594286078693961e-5
allele num: 62724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15882
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.43e-1

FS
type: SiteQuality
SIO_000300: 3.802e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.259e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

QD
type: SiteQuality
SIO_000300: 9.23e0

DP
type: SiteQuality
SIO_000300: 1.42377e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

GenotypeQuality
all individuals: 31842
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4647
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 7.69e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 1.508e1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.071e0

DP
type: SiteQuality
SIO_000300: 3.104773e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4647
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3899
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.42306760358614e-4
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.105042e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.49e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

QD
type: SiteQuality
SIO_000300: 1.494e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3854
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3899
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31838
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3830
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.24e-1

MQ
type: SiteQuality
SIO_000300: 4.949e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 3.104797e6

MQRankSum
type: SiteQuality
SIO_000300: -6.467e0

QD
type: SiteQuality
SIO_000300: 6.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.048e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31840
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496807266840543e-5
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.933e1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

QD
type: SiteQuality
SIO_000300: 1.454e1

FS
type: SiteQuality
SIO_000300: 3.031e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.071e0

VQSLOD
type: SiteQuality
SIO_000300: 6.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.10518e6

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3897
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31838
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2150
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.37e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: -4.47e-1

QD
type: SiteQuality
SIO_000300: 1.308e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 3.105068e6

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8490
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31840
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3895
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.240368306275745e-4
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.117e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQ
type: SiteQuality
SIO_000300: 5.742e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-3

QD
type: SiteQuality
SIO_000300: 1.677e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

DP
type: SiteQuality
SIO_000300: 3.105468e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3822
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3894
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31836
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8495
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

FS
type: SiteQuality
SIO_000300: 1.0107e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e0

VQSLOD
type: SiteQuality
SIO_000300: -1.496e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 1.264e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

DP
type: SiteQuality
SIO_000300: 3.10494e6

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31836
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3894
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3818
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.101e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.241e0

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

FS
type: SiteQuality
SIO_000300: 8.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.253e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 3.10443e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
all individuals: 1943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31835
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3816
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8455
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.275e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

FS
type: SiteQuality
SIO_000300: 1.805e0

VQSLOD
type: SiteQuality
SIO_000300: -4.904e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

DP
type: SiteQuality
SIO_000300: 3.104496e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.565e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31836
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.291e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

FS
type: SiteQuality
SIO_000300: 1.799e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 3.104086e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.16e0

GenotypeQuality
all individuals: 31835
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.374e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 8.497999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.27e-1

DP
type: SiteQuality
SIO_000300: 3.103733e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.436e1

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31835
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3887
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 6.072e1

FS
type: SiteQuality
SIO_000300: 6.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.11e-1

DP
type: SiteQuality
SIO_000300: 3.103029e6

QD
type: SiteQuality
SIO_000300: 1.257e1

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3887
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8409
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3850
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.102942e6

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.331e1

MQ
type: SiteQuality
SIO_000300: 5.929e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3887
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8409
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31835
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

QD
type: SiteQuality
SIO_000300: 1.331e1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

DP
type: SiteQuality
SIO_000300: 3.102942e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

DP
type: SiteQuality
SIO_000300: 3.101802e6

QD
type: SiteQuality
SIO_000300: 1.393e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 3807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3885
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31832
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8285
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.938360147315371e-4
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.507753335737469e-5
allele num: 66552
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.828e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

DP
type: SiteQuality
SIO_000300: 3.100731e6

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31828
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4586
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3801
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507340749449821e-5
allele num: 66342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.154e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

VQSLOD
type: SiteQuality
SIO_000300: -5.84e-1

DP
type: SiteQuality
SIO_000300: 3.094568e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

GenotypeQuality
all individuals: 1937
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31826
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3849
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 8.46e-1

FS
type: SiteQuality
SIO_000300: 1.005e0

VQSLOD
type: SiteQuality
SIO_000300: 8.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 3.09196e6

QD
type: SiteQuality
SIO_000300: 1.458e1

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4548
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31824
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508295625942685e-5
allele num: 66300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

QD
type: SiteQuality
SIO_000300: 1.648e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.76e-1

FS
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: 6.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 3.091958e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3879
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3794
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31827
bin: 9.75e1
variant carriers: 25

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.02571860816944e-4
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.930486593843098e-5
allele num: 10070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.319752527538856e-4
allele num: 66270
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

FS
type: SiteQuality
SIO_000300: 9.27e-1

DP
type: SiteQuality
SIO_000300: 3.091594e6

QD
type: SiteQuality
SIO_000300: 1.412e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 648
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3794
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4545
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7758
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3879
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31827
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2124
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.040992579978105e-4
allele num: 16442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.035913686434284e-5
allele num: 66270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.091594e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 9.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3877
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31814
bin: 9.75e1
variant carriers: 6

East Asian
type: Population
allele count: 2
allele frequency: 2.322340919647004e-4
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018959062915107e-5
allele num: 66248
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.986886548778065e-4
allele num: 10066
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

DP
type: SiteQuality
SIO_000300: 3.090007e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

QD
type: SiteQuality
SIO_000300: 1.425e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-2