3-48507842-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507842
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507842
    reference: chr 3
allele count: 1
allele frequency: 8.350451759440186e-6
allele num: 119754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+134G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-27+134G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-346+134G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.995G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+134G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.-48G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-27+134G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-225G>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3006
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19862
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

3-48507846-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507846
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507846
    reference: chr 3
allele count: 159
allele frequency: 1.32776617954071e-3
allele num: 119750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-27+138C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-27+138C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+138C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+138C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.-44C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.999C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-346+138C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-221C>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 15540
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11115
  bin: 3.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 5928
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17932
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3382
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/3-48507849-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507849
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507849
    reference: chr 3
allele count: 4
allele frequency: 3.33850802076552e-5
allele num: 119814
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.-41C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-27+141C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-218C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+141C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+141C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-27+141C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-346+141C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1002C>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11184
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18312
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-48507851-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507851
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507851
    reference: chr 3
allele count: 1
allele frequency: 8.3462700519138e-6
allele num: 119814
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-216A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+143A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-346+143A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-27+143A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-27+143A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+143A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1004A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.-39A>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

3-48507853-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507853
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507853
    reference: chr 3
allele count: 1
allele frequency: 8.34752412434472e-6
allele num: 119796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+145G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-346+145G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-27+145G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-27+145G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1006G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+145G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.-37G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-214G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19865
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-48507858-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507858
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507858
    reference: chr 3
allele count: 1
allele frequency: 8.342092530490349e-6
allele num: 119874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+150C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.-32C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-27+150C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+150C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-209C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1011C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-346+150C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-27+150C>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6049
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-48507859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507859
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507859
    reference: chr 3
allele count: 1
allele frequency: 8.342370901810295e-6
allele num: 119870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-208C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-346+151C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+151C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.-31C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+151C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-27+151C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1012C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-27+151C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3445
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-48507862-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507862
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507862
    reference: chr 3
allele count: 1
allele frequency: 8.339309838717748e-6
allele num: 119914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-27+154C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-346+154C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.-28C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-27+154C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1015C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-205C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+154C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+154C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2673
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum

3-48507862-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507862
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507861
    reference: chr 3
allele count: 9
allele frequency: 7.505378854845973e-5
allele num: 119914
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1016delT
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-346+155delT
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-27+155delT
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+155delT
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.-27delT
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-27+155delT
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+155delT
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-204delT
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: CT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

3-48507872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507872
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507872
    reference: chr 3
allele count: 4
allele frequency: 3.334166875052096e-5
allele num: 119970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+164C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+164C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-157C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.-18C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-157C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-157C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1025C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-195C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

3-48507875-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507875
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507875
    reference: chr 3
allele count: 1
allele frequency: 8.334722453742291e-6
allele num: 119980
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+167A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-154A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-154A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1028A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-154A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-192A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.-15A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+167A>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-48507893-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507893
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507893
    reference: chr 3
allele count: 1
allele frequency: 8.330695279828055e-6
allele num: 120038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+185G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-136G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1046G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.4G>A
  hgvsp: ENSP00000390478.2:p.Gly2Ser
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-174G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-136G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-136G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+185G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19293
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly2Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

3-48507894-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507894
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507894
    reference: chr 3
allele count: 10
allele frequency: 8.330556481172943e-5
allele num: 120040
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.5G>A
  hgvsp: ENSP00000390478.2:p.Gly2Asp
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1047G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-135G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+186G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-135G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-135G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+186G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-173G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly2Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

3-48507902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507902
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507902
    reference: chr 3
allele count: 1
allele frequency: 8.326671995736744e-6
allele num: 120096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1055G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.13G>A
  hgvsp: ENSP00000390478.2:p.Ala5Thr
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-127G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-127G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-127G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+194G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+194G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-165G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19919
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala5Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

3-48507906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507906
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507906
    reference: chr 3
allele count: 4
allele frequency: 3.330391487519358e-5
allele num: 120106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1059G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+198G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+198G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-123G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-161G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-123G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.17G>A
  hgvsp: ENSP00000390478.2:p.Arg6His
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-123G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg6His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

3-48507906-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507906
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507906
    reference: chr 3
allele count: 2
allele frequency: 1.665195743759679e-5
allele num: 120106
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.17G>T
  hgvsp: ENSP00000390478.2:p.Arg6Leu
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1059G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-123G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+198G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-123G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-161G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+198G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-123G>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19921
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg6Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

3-48507909-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507909
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507909
    reference: chr 3
allele count: 1
allele frequency: 8.325424180361989e-6
allele num: 120114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-120G>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-158G>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.20G>C
  hgvsp: ENSP00000390478.2:p.Arg7Thr
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+201G>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-120G>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-120G>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+201G>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1062G>C
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19917
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6153
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg7Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

3-48507910-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507910
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507910
    reference: chr 3
allele count: 1
allele frequency: 8.324453915823122e-6
allele num: 120128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1063A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+202A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+202A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-119A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-119A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-119A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.21A>G
  hgvsp: ENST00000422277.2:c.21A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-157A>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19916
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg7Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

3-48507916-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507916
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507916
    reference: chr 3
allele count: 1
allele frequency: 8.32209850035785e-6
allele num: 120162
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.27C>T
  hgvsp: ENST00000422277.2:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-113C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-113C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+208C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1069C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+208C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-151C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-113C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly9Gly
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-48507920-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507920
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507920
    reference: chr 3
allele count: 2
allele frequency: 1.664225802156837e-5
allele num: 120176
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-109A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.31A>G
  hgvsp: ENSP00000390478.2:p.Ile11Val
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+212A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-109A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+212A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1073A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-109A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-147A>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19611
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile11Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

3-48507921-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507921
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507921
    reference: chr 3
allele count: 1
allele frequency: 8.320713584396998e-6
allele num: 120182
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.32T>A
  hgvsp: ENSP00000390478.2:p.Ile11Asn
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1074T>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+213T>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-108T>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-108T>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-146T>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+213T>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-108T>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19598
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile11Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-48507923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507923
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507923
    reference: chr 3
allele count: 1
allele frequency: 8.320575118152166e-6
allele num: 120184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-106G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+215G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1076G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+215G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-144G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.34G>A
  hgvsp: ENSP00000390478.2:p.Val12Met
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-106G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-106G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19914
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val12Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-48507926-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507926
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507926
    reference: chr 3
allele count: 3
allele frequency: 2.496006389776358e-5
allele num: 120192
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.37C>T
  hgvsp: ENSP00000390478.2:p.Gln13Ter
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-103C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-141C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-103C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+218C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-103C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1079C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+218C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln13Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/3-48507927-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507927
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507927
    reference: chr 3
allele count: 1
allele frequency: 8.319605983460623e-6
allele num: 120198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1080A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+219A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.38A>C
  hgvsp: ENSP00000390478.2:p.Gln13Pro
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-140A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-102A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-102A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-102A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+219A>C
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln13Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

3-48507927-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507927
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507927
    reference: chr 3
allele count: 5
allele frequency: 4.159802991730312e-5
allele num: 120198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-140A>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+219A>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+219A>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.38A>T
  hgvsp: ENSP00000390478.2:p.Gln13Leu
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-102A>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-102A>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1080A>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-102A>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19915
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln13Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

3-48507933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507933
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507933
    reference: chr 3
allele count: 13
allele frequency: 1.081440811912486e-4
allele num: 120210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1086G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.44G>A
  hgvsp: ENSP00000390478.2:p.Arg15Lys
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-96G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-96G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-134G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-96G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+225G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+225G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19555
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg15Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

3-48507934-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507934
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507934
    reference: chr 3
allele count: 54
allele frequency: 4.491989285773704e-4
allele num: 120214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-133G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.45G>T
  hgvsp: ENSP00000390478.2:p.Arg15Ser
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-95G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-95G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+226G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-95G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1087G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+226G>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16160
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg15Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

3-48507941-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507941
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507941
    reference: chr 3
allele count: 1
allele frequency: 8.318083513558476e-6
allele num: 120220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-88A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-88A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1094A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+233A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.40+233A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.52A>G
  hgvsp: ENSP00000390478.2:p.Met18Val
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-88A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-126A>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met18Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

3-48507956-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507956
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507956
    reference: chr 3
allele count: 1
allele frequency: 8.317806760713336e-6
allele num: 120224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-221C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-73C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-73C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-73C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+248C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.67C>G
  hgvsp: ENSP00000390478.2:p.Pro23Ala
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-111C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1109C>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro23Ala
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

3-48507956-CCCCCTACCCCACTCCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507956
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507939
    reference: chr 3
allele count: 1
allele frequency: 8.317806760713336e-6
allele num: 120224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsp: ENSP00000390478.2:p.Thr25SerfsTer126
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr25SerfsTer126
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: CCCCCTACCCCACTCCCT
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

3-48507959-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507959
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507959
    reference: chr 3
allele count: 19
allele frequency: 1.580172987358616e-4
allele num: 120240
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.70C>G
  hgvsp: ENSP00000390478.2:p.Pro24Ala
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-70C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1112C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-70C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+251C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-70C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-218C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-108C>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro24Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-48507964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507964
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507964
    reference: chr 3
allele count: 1
allele frequency: 8.316423272678886e-6
allele num: 120244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1117C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-65C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-65C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-213C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-65C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-103C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.75C>T
  hgvsp: ENST00000422277.2:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+256C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr25Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

3-48507972-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507972
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507972
    reference: chr 3
allele count: 2
allele frequency: 1.662538030557449e-5
allele num: 120298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-95C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-57C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-205C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+264C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-57C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1125C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.83C>G
  hgvsp: ENSP00000390478.2:p.Pro28Arg
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-57C>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro28Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

3-48507975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507975
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507975
    reference: chr 3
allele count: 9
allele frequency: 7.480674923115286e-5
allele num: 120310
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.86C>T
  hgvsp: ENSP00000390478.2:p.Pro29Leu
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+267C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-202C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1128C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-54C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-92C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-54C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-54C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro29Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

3-48507976-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507976
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507976
    reference: chr 3
allele count: 3
allele frequency: 2.493060980271577e-5
allele num: 120334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-53C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.87C>G
  hgvsp: ENST00000422277.2:c.87C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-53C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1129C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-53C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-91C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-201C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+268C>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7367
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro29Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-48507981-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507981
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507981
    reference: chr 3
allele count: 4
allele frequency: 3.323584153150758e-5
allele num: 120352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-196G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-48G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.92G>A
  hgvsp: ENSP00000390478.2:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1134G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-48G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-48G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+273G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-86G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg31Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

3-48507981-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507981
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507981
    reference: chr 3
allele count: 2
allele frequency: 1.661792076575379e-5
allele num: 120352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1134G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-48G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-196G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.92G>T
  hgvsp: ENSP00000390478.2:p.Arg31Leu
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+273G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-48G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-48G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-86G>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16210
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11413
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg31Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-48507982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507982
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507982
    reference: chr 3
allele count: 1
allele frequency: 8.30813199960121e-6
allele num: 120364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+274G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-47G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1135G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-47G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-47G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-195G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.93G>A
  hgvsp: ENST00000422277.2:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-85G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19915
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6153
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg31Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

3-48507982-G-GATC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507982
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507985
    reference: chr 3
allele count: 3
allele frequency: 2.492439599880363e-5
allele num: 120364
alternate allele: GATC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+275_-9+277dupATC
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-84_-18-82dupATC
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-46_-345-44dupATC
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-194_41-192dupATC
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-46_-26-44dupATC
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1136_1138dupATC
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.94_96dupATC
  hgvsp: ENSP00000390478.2:p.Ile32dup
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-46_-26-44dupATC
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19915
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile32dup
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

3-48507988-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507988
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507988
    reference: chr 3
allele count: 1
allele frequency: 8.306199747491528e-6
allele num: 120392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-41A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.99A>G
  hgvsp: ENST00000422277.2:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-189A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-41A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+280A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1141A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-41A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-79A>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19914
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu33Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

3-48507992-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507992
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507990
    reference: chr 3
allele count: 1
allele frequency: 8.304268393954492e-6
allele num: 120420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-36_-345-35delTG
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+285_-9+286delTG
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.104_105delTG
  hgvsp: ENSP00000390478.2:p.Leu35ArgfsTer121
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-36_-26-35delTG
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-36_-26-35delTG
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1146_1147delTG
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-74_-18-73delTG
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-184_41-183delTG
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 16255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6170
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu35ArgfsTer121
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: CTG
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

3-48507999-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48507999
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48507999
    reference: chr 3
allele count: 5
allele frequency: 4.150273087969188e-5
allele num: 120474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-30C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-178C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1152C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.110C>T
  hgvsp: ENSP00000390478.2:p.Thr37Ile
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-68C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+291C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-30C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-30C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr37Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

3-48508004-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508004
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508004
    reference: chr 3
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-25A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1157A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-25A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.115A>G
  hgvsp: ENSP00000390478.2:p.Thr39Ala
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-63A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-173A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-25A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+296A>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr39Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

3-48508011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508011
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508011
    reference: chr 3
allele count: 1
allele frequency: 8.294487483618387e-6
allele num: 120562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+303C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-18C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-56C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-18C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-18C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1164C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.122C>T
  hgvsp: ENSP00000390478.2:p.Thr41Ile
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-166C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6182
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr41Ile
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-48508015-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508015
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508015
    reference: chr 3
allele count: 7
allele frequency: 5.804023017096994e-5
allele num: 120606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+307A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.126A>C
  hgvsp: ENST00000422277.2:c.126A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-14A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1168A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-52A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-14A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-162A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-14A>C
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20142
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro42Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

3-48508022-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508022
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508022
    reference: chr 3
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+314T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-7T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-7T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-45T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-155T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.133T>C
  hgvsp: ENSP00000390478.2:p.Ser45Pro
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1175T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-7T>C
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19897
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser45Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

3-48508024-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508024
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508024
    reference: chr 3
allele count: 1
allele frequency: 8.288162845823595e-6
allele num: 120654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-5T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1177T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-5T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-153T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-5T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+316T>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.135T>C
  hgvsp: ENST00000422277.2:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-43T>C
  variant of: http://identifiers.org/hgnc/12269
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20183
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
hgvs: c.-345-5T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-48508028-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508028
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508028
    reference: chr 3
allele count: 11
allele frequency: 9.114863857078935e-5
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-149G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-39G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1181G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+320G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.139G>A
  hgvsp: ENSP00000390478.2:p.Gly47Ser
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-26-1G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-345-1G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-26-1G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19893
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
hgvs: c.-345-1G>A
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

3-48508039-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508039
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508039
    reference: chr 3
allele count: 1
allele frequency: 8.279379377721846e-6
allele num: 120782
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.150A>G
  hgvsp: ENST00000422277.2:c.150A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-138A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-16A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-28A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-335A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-16A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1192A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+331A>G
  variant of: http://identifiers.org/hgnc/12269
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2661
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
hgvs: c.-335A>G
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

3-48508040-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508040
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508040
    reference: chr 3
allele count: 1
allele frequency: 8.278145695364238e-6
allele num: 120800
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.151G>A
  hgvsp: ENSP00000390478.2:p.Gly51Ser
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+332G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1193G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-15G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-137G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-27G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-15G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20202
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly51Ser
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

3-48508042-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508042
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508042
    reference: chr 3
allele count: 1
allele frequency: 8.276638360563474e-6
allele num: 120822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-13T>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1195T>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-13T>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.153T>G
  hgvsp: ENST00000422277.2:c.153T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+2T>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+334T>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-25T>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-135T>G
  variant of: http://identifiers.org/hgnc/12269
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20187
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.25e1
  variant carriers: 0
hgvs: c.-334+2T>G
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-48508044-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508044
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508044
    reference: chr 3
allele count: 9
allele frequency: 7.447864945382324e-5
allele num: 120840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+4C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.155C>G
  hgvsp: ENSP00000390478.2:p.Thr52Arg
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-23C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+336C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-11C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-11C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1197C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-133C>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 16374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6176
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr52Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

3-48508044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508044
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508044
    reference: chr 3
allele count: 1
allele frequency: 8.275405494869249e-6
allele num: 120840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-11C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+4C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-23C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-133C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-11C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.155C>T
  hgvsp: ENSP00000390478.2:p.Thr52Met
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+336C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1197C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19893
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr52Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

3-48508045-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508045
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508045
    reference: chr 3
allele count: 3
allele frequency: 2.482334055968359e-5
allele num: 120854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+337G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+5G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1198G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-10G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-22G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-10G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.156G>A
  hgvsp: ENST00000422277.2:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-132G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2661
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20227
  bin: 6.25e1
  variant carriers: 0
hgvs: c.-334+5G>A
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

3-48508047-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508047
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508047
    reference: chr 3
allele count: 2
allele frequency: 1.654588173003739e-5
allele num: 120876
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-130A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-20A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-8A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-8A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+7A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.158A>G
  hgvsp: ENSP00000390478.2:p.Tyr53Cys
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+339A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1200A>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3448
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2661
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr53Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/3-48508052-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508052
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508052
    reference: chr 3
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-15A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+12A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.-3A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.-3A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-125A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+344A>C
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.163A>C
  hgvsp: ENSP00000390478.2:p.Thr55Pro
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1205A>C
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19882
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr55Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-48508055-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508055
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508055
    reference: chr 3
allele count: 1
allele frequency: 8.27034090345204e-6
allele num: 120914
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.1A>G
  hgvsp: ENSP00000392569.2:p.Met1?
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+347A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.166A>G
  hgvsp: ENSP00000390478.2:p.Met56Val
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1208A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.1A>G
  hgvsp: ENSP00000296443.9:p.Met1?
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+15A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-122A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-12A>G
  variant of: http://identifiers.org/hgnc/12269
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS

3-48508059-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508059
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508059
    reference: chr 3
allele count: 1
allele frequency: 8.269520202437855e-6
allele num: 120926
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.170G>T
  hgvsp: ENSP00000390478.2:p.Gly57Val
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+19G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-118G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.5G>T
  hgvsp: ENSP00000392569.2:p.Gly2Val
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-8G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+351G>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.5G>T
  hgvsp: ENSP00000296443.9:p.Gly2Val
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1212G>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19880
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly57Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

3-48508062-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508062
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508062
    reference: chr 3
allele count: 1
allele frequency: 8.268973158913126e-6
allele num: 120934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-115C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1215C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-5C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.173C>T
  hgvsp: ENSP00000390478.2:p.Ser58Leu
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.8C>T
  hgvsp: ENSP00000392569.2:p.Ser3Leu
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.8C>T
  hgvsp: ENSP00000296443.9:p.Ser3Leu
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+354C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+22C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser58Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

3-48508063-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508063
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508063
    reference: chr 3
allele count: 8
allele frequency: 6.614959731432634e-5
allele num: 120938
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.174G>A
  hgvsp: ENST00000422277.2:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+355G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1216G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+23G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-18-4G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.9G>A
  hgvsp: ENST00000296443.9:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.9G>A
  hgvsp: ENST00000436480.2:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-114G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
hgvs: c.-18-4G>A
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

3-48508072-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508072
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508073
    reference: chr 3
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.23dupC
  hgvsp: ENSP00000296443.9:p.Pro10AlafsTer92
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.188dupC
  hgvsp: ENSP00000390478.2:p.Pro65AlafsTer92
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+369dupC
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+37dupC
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1230dupC
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-8dupC
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.23dupC
  hgvsp: ENSP00000392569.2:p.Pro10AlafsTer92
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-100dupC
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11356
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro65AlafsTer92
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/3-48508073-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508073
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508073
    reference: chr 3
allele count: 1
allele frequency: 8.265282507356101e-6
allele num: 120988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+365C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.184C>A
  hgvsp: ENSP00000390478.2:p.Pro62Thr
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+33C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.19C>A
  hgvsp: ENSP00000296443.9:p.Pro7Thr
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.19C>A
  hgvsp: ENSP00000392569.2:p.Pro7Thr
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-12C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-104C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1226C>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro62Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

3-48508074-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508074
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508074
    reference: chr 3
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.20C>G
  hgvsp: ENSP00000392569.2:p.Pro7Arg
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.185C>G
  hgvsp: ENSP00000390478.2:p.Pro62Arg
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1227C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-11C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+34C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-103C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.20C>G
  hgvsp: ENSP00000296443.9:p.Pro7Arg
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+366C>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro62Arg
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/3-48508075-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508075
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508075
    reference: chr 3
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+367C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.21C>A
  hgvsp: ENST00000296443.9:c.21C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.186C>A
  hgvsp: ENST00000422277.2:c.186C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.21C>A
  hgvsp: ENST00000436480.2:c.21C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+35C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-10C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-102C>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1228C>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16394
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro62Pro
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

3-48508075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508075
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508075
    reference: chr 3
allele count: 2
allele frequency: 1.65264671371201e-5
allele num: 121018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+35C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.21C>T
  hgvsp: ENST00000436480.2:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+367C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.186C>T
  hgvsp: ENST00000422277.2:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-102C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.21C>T
  hgvsp: ENST00000296443.9:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1228C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro62Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

3-48508076-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508076
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508076
    reference: chr 3
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.187C>G
  hgvsp: ENSP00000390478.2:p.Pro63Ala
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-9C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.22C>G
  hgvsp: ENSP00000296443.9:p.Pro8Ala
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+36C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-101C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.22C>G
  hgvsp: ENSP00000392569.2:p.Pro8Ala
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+368C>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1229C>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19874
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro63Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

3-48508077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508077
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508077
    reference: chr 3
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-100C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.188C>T
  hgvsp: ENSP00000390478.2:p.Pro63Leu
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1230C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.23C>T
  hgvsp: ENSP00000296443.9:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+369C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.23C>T
  hgvsp: ENSP00000392569.2:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+37C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro63Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

3-48508078-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508078
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508078
    reference: chr 3
allele count: 5
allele frequency: 4.131138872364333e-5
allele num: 121032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-7G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.24G>A
  hgvsp: ENST00000296443.9:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.189G>A
  hgvsp: ENST00000422277.2:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+38G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.24G>A
  hgvsp: ENST00000436480.2:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+370G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-99G>A
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1231G>A
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro63Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

3-48508084-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508084
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508084
    reference: chr 3
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+44C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.30C>T
  hgvsp: ENST00000296443.9:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.30C>T
  hgvsp: ENST00000436480.2:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1237C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-93C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.195C>T
  hgvsp: ENST00000422277.2:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+376C>T
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro65Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

3-48508085-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508085
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508085
    reference: chr 3
allele count: 1
allele frequency: 8.256547442121603e-6
allele num: 121116
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1238A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.31A>G
  hgvsp: ENSP00000392569.2:p.Met11Val
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-9+377A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.1A>G
  hgvsp: ENSP00000415972.1:p.Met1?
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+45A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.31A>G
  hgvsp: ENSP00000296443.9:p.Met11Val
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-92A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.196A>G
  hgvsp: ENSP00000390478.2:p.Met66Val
  variant of: http://identifiers.org/hgnc/12269
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

3-48508089-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48508089
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 48508089
    reference: chr 3
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000415972
  ensembl transcript: ENST00000444177
  gene symbol: TREX1
  hgvsc: ENST00000444177.1:c.5A>G
  hgvsp: ENSP00000415972.1:p.Gln2Arg
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000411331
  ensembl transcript: ENST00000456089
  gene symbol: TREX1
  hgvsc: ENST00000456089.1:c.-8-375A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000492235
  gene symbol: TREX1
  hgvsc: ENST00000492235.1:n.41-88A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000296443
  ensembl transcript: ENST00000296443
  gene symbol: TREX1
  hgvsc: ENST00000296443.9:c.35A>G
  hgvsp: ENSP00000296443.9:p.Gln12Arg
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000390478
  ensembl transcript: ENST00000422277
  gene symbol: TREX1
  hgvsc: ENST00000422277.2:c.200A>G
  hgvsp: ENSP00000390478.2:p.Gln67Arg
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000392569
  ensembl transcript: ENST00000436480
  gene symbol: TREX1
  hgvsc: ENST00000436480.2:c.35A>G
  hgvsp: ENSP00000392569.2:p.Gln12Arg
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213689
  ensembl protein: ENSP00000412404
  ensembl transcript: ENST00000433541
  gene symbol: TREX1
  hgvsc: ENST00000433541.1:c.-334+49A>G
  variant of: http://identifiers.org/hgnc/12269
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213689
  ensembl transcript: ENST00000395677
  gene symbol: TREX1
  hgvsc: ENST00000395677.1:n.1242A>G
  variant of: http://identifiers.org/hgnc/12269
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln67Arg
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5924
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515059693351918e-5
allele num: 66004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.6e-2

QD
type: SiteQuality
SIO_000300: 1.537e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.218e0

FS
type: SiteQuality
SIO_000300: 6.522e0

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.135e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 2.10443e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3017
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19948
bin: 9.75e1
variant carriers: 159

African
type: Population
allele count: 1
allele frequency: 1.032417922775139e-4
allele num: 9686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 119
allele frequency: 1.802811780390256e-3
allele num: 66008
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 1.996874457371071e-3
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 16
allele frequency: 2.421307506053269e-3
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.276e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.234e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.109014e6

GenotypeQuality
all individuals: 1834
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19861
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66034
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.424536307431204e-4
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.279e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.761e0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

FS
type: SiteQuality
SIO_000300: 9.015000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.11e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 2.110503e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 554
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2645
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19858
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514187941007238e-5
allele num: 66042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.055e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 2.112581e6

MQRankSum
type: SiteQuality
SIO_000300: -1.331e0

QD
type: SiteQuality
SIO_000300: 1.563e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.662e-1

GenotypeQuality
all individuals: 3420
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2728
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1850
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GenotypeQuality
all individuals: 171
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GenotypeQuality
all individuals: 49
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 541
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variant carriers: 0

GenotypeQuality
all individuals: 2652
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514554872323024e-5
allele num: 66026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.306e0

MQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.114428e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.538e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.691e0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19880
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GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 2756
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variant carriers: 0

GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 2663
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variant carriers: 0

GenotypeQuality
all individuals: 3449
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variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66072
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.117218e6

FS
type: SiteQuality
SIO_000300: 6.154e0

QD
type: SiteQuality
SIO_000300: 1.468e1

VQSLOD
type: SiteQuality
SIO_000300: -8.958e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.963e0

MQRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 18946
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variant carriers: 0

GenotypeQuality
all individuals: 516
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variant carriers: 0

GenotypeQuality
all individuals: 294
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GenotypeQuality
all individuals: 6050
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variant carriers: 0

GenotypeQuality
all individuals: 2669
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variant carriers: 0

GenotypeQuality
all individuals: 1859
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variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 19881
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513637877274241e-5
allele num: 66066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.114e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-1

DP
type: SiteQuality
SIO_000300: 2.11819e6

MQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 148
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 2753
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.64e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.48e-1

MQ
type: SiteQuality
SIO_000300: 5.996e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 2.119753e6

FS
type: SiteQuality
SIO_000300: 2.336e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 2673
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.453884377651194e-4
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66096
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.48e-1

FS
type: SiteQuality
SIO_000300: 2.336e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

DP
type: SiteQuality
SIO_000300: 2.119753e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.996e1

QD
type: SiteQuality
SIO_000300: 1.436e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.5355587808418e-5
allele num: 66144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 2.122853e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 19197
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511807214344027e-5
allele num: 66146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

VQSLOD
type: SiteQuality
SIO_000300: -1.705e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 1.2202e1

QD
type: SiteQuality
SIO_000300: 1.287e1

DP
type: SiteQuality
SIO_000300: 2.123215e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6135
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66196
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.030715316429602e-4
allele num: 9702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 5.831e1

VQSLOD
type: SiteQuality
SIO_000300: -9.887e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.75e-1

QD
type: SiteQuality
SIO_000300: 9.23e0

FS
type: SiteQuality
SIO_000300: 5.076e0

DP
type: SiteQuality
SIO_000300: 2.125605e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.063991781980784e-5
allele num: 66196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

FS
type: SiteQuality
SIO_000300: 6.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

DP
type: SiteQuality
SIO_000300: 2.12626e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 1.287e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 19442
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.257e1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.515e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.895e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: -6.225000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.68e0

FS
type: SiteQuality
SIO_000300: 3.847e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 2.127494e6

GenotypeQuality
all individuals: 1872
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19921
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 129
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GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019232511095679e-5
allele num: 66242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 5.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e0

DP
type: SiteQuality
SIO_000300: 2.128413e6

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

QD
type: SiteQuality
SIO_000300: 1.322e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2788
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.058036633052068e-4
allele num: 9718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 2.128413e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

FS
type: SiteQuality
SIO_000300: 5.42e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.142e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.682e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 2.128476e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66260
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

FS
type: SiteQuality
SIO_000300: 5.946e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

DP
type: SiteQuality
SIO_000300: 2.128589e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.243e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.11e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.315e0

QD
type: SiteQuality
SIO_000300: 1.056e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.596e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.129135e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.344e0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 2793
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GenotypeQuality
all individuals: 96
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GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508523155830442e-5
allele num: 66290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.129749e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.081e0

FS
type: SiteQuality
SIO_000300: 1.6333e1

QD
type: SiteQuality
SIO_000300: 1.414e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19914
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 409
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508386629660915e-5
allele num: 66296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.471e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.413e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
SIO_000300: 1.378e1

MQ
type: SiteQuality
SIO_000300: 5.878e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.158e0

DP
type: SiteQuality
SIO_000300: 2.129669e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508295625942685e-5
allele num: 66300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

DP
type: SiteQuality
SIO_000300: 2.129529e6

QD
type: SiteQuality
SIO_000300: 1.24e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 2.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.182e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.082614056720099e-4
allele num: 9732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.129759e6

FS
type: SiteQuality
SIO_000300: 7.645e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.234e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.628e0

VQSLOD
type: SiteQuality
SIO_000300: 9.19e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.913e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.393e1

DP
type: SiteQuality
SIO_000300: 2.130463e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

GenotypeQuality
all individuals: 6143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.540340823405218e-5
allele num: 66310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

QD
type: SiteQuality
SIO_000300: 1.393e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

FS
type: SiteQuality
SIO_000300: 1.913e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

DP
type: SiteQuality
SIO_000300: 2.130463e6

GenotypeQuality
all individuals: 1871
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 13

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 3077
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.960252118580174e-4
allele num: 66318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.371e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.065e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

DP
type: SiteQuality
SIO_000300: 2.130975e6

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 53

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2788
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

East Asian
type: Population
allele count: 41
allele frequency: 4.774103400093153e-3
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.03172688340672e-5
allele num: 66316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.847309743092584e-4
allele num: 16504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

DP
type: SiteQuality
SIO_000300: 2.134887e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.918e0

FS
type: SiteQuality
SIO_000300: 1.199e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.31e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507840772014475e-5
allele num: 66320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.908e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.408e1

DP
type: SiteQuality
SIO_000300: 2.131794e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 123
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GenotypeQuality
all individuals: 2671
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 19933
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 3474
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GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 6109
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
type: SiteQuality
SIO_000300: 2.131329e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

QD
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SIO_000300: 8.199999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

FS
type: SiteQuality
SIO_000300: 1.0599e1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.03e-1

GenotypeQuality
all individuals: 19933
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.131329e6

FS
type: SiteQuality
SIO_000300: 1.0599e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

QD
type: SiteQuality
SIO_000300: 8.199999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 19

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 19
allele frequency: 2.212904728627999e-3
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66336
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.553e0

FS
type: SiteQuality
SIO_000300: 2.005e0

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

DP
type: SiteQuality
SIO_000300: 2.133969e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

QD
type: SiteQuality
SIO_000300: 1.419e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2781
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variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.506999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.777e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.03e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: -1.066e0

DP
type: SiteQuality
SIO_000300: 2.131772e6

FS
type: SiteQuality
SIO_000300: 8.397e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3461
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.01331886940276e-5
allele num: 66372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

FS
type: SiteQuality
SIO_000300: 5.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.132561e6

MQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.851e0

QD
type: SiteQuality
SIO_000300: 1.419e1

GenotypeQuality
all individuals: 168
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19930
bin: 9.75e1
variant carriers: 9

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.355789219969269e-4
allele num: 66382
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.008e0

DP
type: SiteQuality
SIO_000300: 2.13389e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.977e0

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.097e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.537e1

GenotypeQuality
all individuals: 107
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 19923
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025220422390814e-4
allele num: 9754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011776044333343e-5
allele num: 66406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.501e1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.971e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.274e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 2.13332e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.050861361771944e-4
allele num: 9752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505389293671343e-5
allele num: 66428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.335e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

DP
type: SiteQuality
SIO_000300: 2.13388e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212415130940834e-4
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 184
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GenotypeQuality
all individuals: 17
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505298651252408e-5
allele num: 66432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.635e0

MQRankSum
type: SiteQuality
SIO_000300: -1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 2.134089e6

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.607e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

QD
type: SiteQuality
SIO_000300: 1.657e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
all individuals: 184
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3466
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6153
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.515895953757225e-5
allele num: 66432
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 4.635e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -1.79e0

DP
type: SiteQuality
SIO_000300: 2.134089e6

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

MQ
type: SiteQuality
SIO_000300: 5.607e1

QD
type: SiteQuality
SIO_000300: 1.657e1

GenotypeQuality
all individuals: 1857
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19822
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6159
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 1.504e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.9e0

MQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

DP
type: SiteQuality
SIO_000300: 2.134678e6

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

GenotypeQuality
all individuals: 344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.135108e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.143e0

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.337e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6173
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028834504482675e-4
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.414e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.804e0

DP
type: SiteQuality
SIO_000300: 2.136159e6

VQSLOD
type: SiteQuality
SIO_000300: 7.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6174
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variant carriers: 0

GenotypeQuality
all individuals: 2666
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3460
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20027
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e0

FS
type: SiteQuality
SIO_000300: 4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.786e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 2.136546e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.951e-1

QD
type: SiteQuality
SIO_000300: 1.064e1

GenotypeQuality
all individuals: 19905
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503171692270691e-5
allele num: 66526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.342e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

DP
type: SiteQuality
SIO_000300: 2.137056e6

QD
type: SiteQuality
SIO_000300: 1.53e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.026e0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19904
bin: 9.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.634161114476075e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.137705e6

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

QD
type: SiteQuality
SIO_000300: 1.192e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3459
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502133028901039e-5
allele num: 66572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.381e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-2

DP
type: SiteQuality
SIO_000300: 2.138025e6

FS
type: SiteQuality
SIO_000300: 3.418e0

MQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 3054
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3459
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19896
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.467e0

DP
type: SiteQuality
SIO_000300: 2.137961e6

QD
type: SiteQuality
SIO_000300: 5.75e0

FS
type: SiteQuality
SIO_000300: 6.115e0

MQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

VQSLOD
type: SiteQuality
SIO_000300: -2.183e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
all individuals: 331
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3458
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.634161114476075e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.474635163307853e-4
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003814844852963e-5
allele num: 66582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.433e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.828e0

VQSLOD
type: SiteQuality
SIO_000300: 7.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.08e-1

DP
type: SiteQuality
SIO_000300: 2.138939e6

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.345e0

MQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

QD
type: SiteQuality
SIO_000300: 1.237e1

VQSLOD
type: SiteQuality
SIO_000300: 6.49e-1

DP
type: SiteQuality
SIO_000300: 2.138478e6

FS
type: SiteQuality
SIO_000300: 3.173e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3456
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2661
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 6186
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3111e1

MQRankSum
type: SiteQuality
SIO_000300: -9.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.686e0

QD
type: SiteQuality
SIO_000300: 1.437e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.314e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.138574e6

GenotypeQuality
all individuals: 2779
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19892
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2661
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

FS
type: SiteQuality
SIO_000300: 2.734e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.63e-1

DP
type: SiteQuality
SIO_000300: 2.138611e6

QD
type: SiteQuality
SIO_000300: 1.534e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

GenotypeQuality
all individuals: 3449
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 19893
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3057
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variant carriers: 0

GenotypeQuality
all individuals: 2774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2661
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20180
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.778738115816768e-4
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

DP
type: SiteQuality
SIO_000300: 2.140673e6

FS
type: SiteQuality
SIO_000300: 1.101e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

QD
type: SiteQuality
SIO_000300: 1.334e1

GenotypeQuality
all individuals: 1850
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

FS
type: SiteQuality
SIO_000300: 1.101e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 2.140673e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.334e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.99000999000999e-5
allele num: 10010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.225e1

DP
type: SiteQuality
SIO_000300: 2.139124e6

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 5.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.84e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 62
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002822653294096e-5
allele num: 66604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.22e0

FS
type: SiteQuality
SIO_000300: 1.741e0

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.398e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

DP
type: SiteQuality
SIO_000300: 2.138516e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6183
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 4.519e0

VQSLOD
type: SiteQuality
SIO_000300: 5.94e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.137868e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.228e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 1
allele frequency: 9.934432743890324e-5
allele num: 10066
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ClippingRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -2.0e-4

ReadPosRankSum
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DP
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VQSLOD
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SIO_000300: -1.119e-1

QD
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.494e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66602
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 6.51e-1

MQRankSum
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VQSLOD
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DP
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SIO_000300: 2.137317e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66602
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East Asian
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allele frequency: 0.0e0
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African
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allele num: 10094
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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SIO_000300: -2.007e0

DP
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InbreedingCoeff
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SIO_000300: 7.0e-3

MQRankSum
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VQSLOD
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SIO_000300: 3.69e-1

FS
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SIO_000300: 3.213e0

ReadPosRankSum
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SIO_000300: 1.27e0

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

Other
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allele num: 902
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East Asian
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allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.006547136378653e-5
allele num: 66594
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.592912705272256e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

FS
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

DP
type: SiteQuality
SIO_000300: 2.138721e6

QD
type: SiteQuality
SIO_000300: 1.454e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.45e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
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SIO_000300: -2.149e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.511e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

MQ
type: SiteQuality
SIO_000300: 6.032e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

DP
type: SiteQuality
SIO_000300: 2.137103e6

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
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DP
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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FS
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ClippingRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66606
num of homozygotes: 0

South Asian
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DP
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QD
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66606
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European (Finnish)
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East Asian
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Latino
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South Asian
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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allele num: 66606
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Latino
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European (Finnish)
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African
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Other
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South Asian
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ClippingRankSum
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MQ
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ReadPosRankSum
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FS
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BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 7.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

DP
type: SiteQuality
SIO_000300: 2.137584e6

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.333e1

GenotypeQuality
all individuals: 96
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6146
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2768
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.77e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.399e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.137196e6

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19874
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6147
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

DP
type: SiteQuality
SIO_000300: 2.13719e6

FS
type: SiteQuality
SIO_000300: 9.52e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.449e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.646e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3426
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19879
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.811616954474098e-5
allele num: 10192
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.504233979941145e-5
allele num: 66604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.137993e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

QD
type: SiteQuality
SIO_000300: 1.458e1

FS
type: SiteQuality
SIO_000300: 1.107e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e0

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.34e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19885
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.68e0

DP
type: SiteQuality
SIO_000300: 2.138209e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.71e-1

QD
type: SiteQuality
SIO_000300: 1.056e1

GenotypeQuality
all individuals: 3049
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19885
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.731413001167769e-5
allele num: 10276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -1.157e0

VQSLOD
type: SiteQuality
SIO_000300: -2.569e-1

DP
type: SiteQuality
SIO_000300: 2.138656e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 7.136e0

QD
type: SiteQuality
SIO_000300: 1.4e1

MQ
type: SiteQuality
SIO_000300: 5.972e1