3-170875472-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170875472
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170875472
    reference: chr 3
allele count: 207
allele frequency: 9.667476181580422e-3
allele num: 21412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.1017-19C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.1017-19C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.1017-19C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.939-19C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.1017-19C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.1017-19C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.1017-19C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.1017-19C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.1017-19C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.1017-19C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.1017-19C>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 7.5e0
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 32407
  bin: 2.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3844
  bin: 2.25e1
  variant carriers: 7
num of homozygotes: 5
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS

3-170875482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170875482
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170875482
    reference: chr 3
allele count: 2
allele frequency: 9.616309260505818e-5
allele num: 20798
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.1017-29G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.1017-29G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.1017-29G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.1017-29G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.939-29G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.1017-29G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.1017-29G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.1017-29G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.1017-29G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.1017-29G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.1017-29G>A
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

3-170875486-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170875486
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170875486
    reference: chr 3
allele count: 1
allele frequency: 4.843084075939558e-5
allele num: 20648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.1017-33C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.1017-33C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.939-33C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.1017-33C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.1017-33C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.1017-33C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.1017-33C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.1017-33C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.1017-33C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.1017-33C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.1017-33C>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

3-170875487-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170875487
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170875487
    reference: chr 3
allele count: 1
allele frequency: 4.841208365608056e-5
allele num: 20656
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.1017-34A>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.1017-34A>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.1017-34A>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.1017-34A>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.1017-34A>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.1017-34A>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.1017-34A>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.1017-34A>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.939-34A>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.1017-34A>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.1017-34A>C
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

3-170875496-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170875496
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170875496
    reference: chr 3
allele count: 6
allele frequency: 2.944929812506135e-4
allele num: 20374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.939-43C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.1017-43C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.1017-43C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.1017-43C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.1017-43C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.1017-43C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.1017-43C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.1017-43C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.1017-43C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.1017-43C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.1017-43C>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30196
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

3-170875500-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170875500
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170875500
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 20204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.939-47T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.1017-47T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.1017-47T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.1017-47T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.1017-47T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.1017-47T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.1017-47T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.1017-47T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.1017-47T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.1017-47T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.1017-47T>C
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30164
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

3-170879017-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879017
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879017
    reference: chr 3
allele count: 1
allele frequency: 8.356592515835743e-6
allele num: 119666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.1016+42A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.1016+42A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.1016+42A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.1016+42A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.1016+42A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.1016+42A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.1016+42A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.1016+42A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.1016+42A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.1016+42A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.938+42A>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-170879023-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879023
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879023
    reference: chr 3
allele count: 12
allele frequency: 1.002221591193813e-4
allele num: 119734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.1016+36A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.1016+36A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.1016+36A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.1016+36A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.1016+36A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.1016+36A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.938+36A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.1016+36A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.1016+36A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.1016+36A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.1016+36A>G
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18510
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17603
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

3-170879044-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879044
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879043
    reference: chr 3
allele count: 2
allele frequency: 1.664308895731048e-5
allele num: 120170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.1016+14delA
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.938+14delA
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.1016+14delA
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.1016+14delA
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.1016+14delA
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.1016+14delA
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.1016+14delA
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.1016+14delA
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.1016+14delA
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.1016+14delA
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.1016+14delA
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20347
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: CT
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

3-170879050-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879050
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879050
    reference: chr 3
allele count: 2
allele frequency: 1.6627315353663e-5
allele num: 120284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.1016+9G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.1016+9G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.1016+9G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.1016+9G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.938+9G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.1016+9G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.1016+9G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.1016+9G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.1016+9G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.1016+9G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.1016+9G>C
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19088
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7944
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

3-170879052-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879052
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879052
    reference: chr 3
allele count: 1
allele frequency: 8.311308366163002e-6
allele num: 120318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.1016+7G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.1016+7G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.1016+7G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.1016+7G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.1016+7G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.938+7G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.1016+7G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.1016+7G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.1016+7G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.1016+7G>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.1016+7G>C
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8229
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1016+7G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

3-170879078-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879078
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879075
    reference: chr 3
allele count: 1
allele frequency: 8.297102651754007e-6
allele num: 120524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.994_996delGAG
  hgvsp: ENSP00000284483.8:p.Glu332del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.916_918delGAG
  hgvsp: ENSP00000417338.1:p.Glu306del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.994_996delGAG
  hgvsp: ENSP00000399511.2:p.Glu332del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.994_996delGAG
  hgvsp: ENSP00000358332.5:p.Glu332del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.994_996delGAG
  hgvsp: ENSP00000418378.1:p.Glu332del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.994_996delGAG
  hgvsp: ENSP00000418156.1:p.Glu332del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.994_996delGAG
  hgvsp: ENSP00000345352.6:p.Glu332del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.994_996delGAG
  hgvsp: ENSP00000443278.1:p.Glu332del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.994_996delGAG
  hgvsp: ENSP00000349880.5:p.Glu332del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.994_996delGAG
  hgvsp: ENSP00000418916.1:p.Glu332del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.994_996delGAG
  hgvsp: ENSP00000419990.1:p.Glu332del
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19615
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu332del
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: TCTC
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-170879085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879085
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879085
    reference: chr 3
allele count: 2
allele frequency: 1.659585767392459e-5
allele num: 120512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.990G>A
  hgvsp: ENST00000470834.1:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.990G>A
  hgvsp: ENST00000284483.8:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.990G>A
  hgvsp: ENST00000538048.1:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.990G>A
  hgvsp: ENST00000436636.2:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.990G>A
  hgvsp: ENST00000357327.5:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.990G>A
  hgvsp: ENST00000460047.1:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.990G>A
  hgvsp: ENST00000488470.1:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.990G>A
  hgvsp: ENST00000369326.5:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.990G>A
  hgvsp: ENST00000475336.1:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.912G>A
  hgvsp: ENST00000468757.1:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.990G>A
  hgvsp: ENST00000341852.6:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19654
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu330Glu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-170879088-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879088
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879088
    reference: chr 3
allele count: 3
allele frequency: 2.489296027083541e-5
allele num: 120516
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.909A>G
  hgvsp: ENST00000468757.1:c.909A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.987A>G
  hgvsp: ENST00000341852.6:c.987A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.987A>G
  hgvsp: ENST00000475336.1:c.987A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.987A>G
  hgvsp: ENST00000488470.1:c.987A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.987A>G
  hgvsp: ENST00000460047.1:c.987A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.987A>G
  hgvsp: ENST00000436636.2:c.987A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.987A>G
  hgvsp: ENST00000357327.5:c.987A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.987A>G
  hgvsp: ENST00000284483.8:c.987A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.987A>G
  hgvsp: ENST00000470834.1:c.987A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.987A>G
  hgvsp: ENST00000538048.1:c.987A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.987A>G
  hgvsp: ENST00000369326.5:c.987A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu329Glu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-170879118-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879118
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879118
    reference: chr 3
allele count: 1
allele frequency: 8.307579835842223e-6
allele num: 120372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.957A>G
  hgvsp: ENST00000475336.1:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.879A>G
  hgvsp: ENST00000468757.1:c.879A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.957A>G
  hgvsp: ENST00000284483.8:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.957A>G
  hgvsp: ENST00000460047.1:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.957A>G
  hgvsp: ENST00000470834.1:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.957A>G
  hgvsp: ENST00000369326.5:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.957A>G
  hgvsp: ENST00000538048.1:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.957A>G
  hgvsp: ENST00000341852.6:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.957A>G
  hgvsp: ENST00000488470.1:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.957A>G
  hgvsp: ENST00000357327.5:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.957A>G
  hgvsp: ENST00000436636.2:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr319Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

3-170879143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879143
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879143
    reference: chr 3
allele count: 1
allele frequency: 8.339727124128499e-6
allele num: 119908
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.950-18G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.950-18G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.950-18G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.950-18G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.950-18G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.950-18G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.950-18G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.950-18G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.872-18G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.950-18G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.950-18G>A
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2493
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

3-170879150-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879150
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879150
    reference: chr 3
allele count: 3
allele frequency: 2.504257237303416e-5
allele num: 119796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.950-25C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.950-25C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.950-25C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.872-25C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.950-25C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.950-25C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.950-25C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.950-25C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.950-25C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.950-25C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.950-25C>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18663
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-170879151-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879151
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879151
    reference: chr 3
allele count: 2
allele frequency: 1.669867245553978e-5
allele num: 119770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.950-26A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.950-26A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.950-26A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.950-26A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.872-26A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.950-26A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.950-26A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.950-26A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.950-26A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.950-26A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.950-26A>G
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

3-170879152-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879152
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879152
    reference: chr 3
allele count: 3
allele frequency: 2.506014434643144e-5
allele num: 119712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.950-27C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.950-27C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.950-27C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.950-27C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.950-27C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.872-27C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.950-27C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.950-27C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.950-27C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.950-27C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.950-27C>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15730
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-170879155-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879155
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879156
    reference: chr 3
allele count: 1
allele frequency: 8.360365180751095e-6
allele num: 119612
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.950-31dupT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.950-31dupT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.950-31dupT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.950-31dupT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.950-31dupT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.950-31dupT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.950-31dupT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.872-31dupT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.950-31dupT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.950-31dupT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.950-31dupT
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14063
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

3-170879157-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879157
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879157
    reference: chr 3
allele count: 2
allele frequency: 1.672045078335312e-5
allele num: 119614
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.950-32T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.950-32T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.950-32T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.950-32T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.950-32T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.950-32T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.950-32T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.872-32T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.950-32T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.950-32T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.950-32T>C
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

3-170879162-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879162
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879162
    reference: chr 3
allele count: 2
allele frequency: 1.673360107095047e-5
allele num: 119520
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.950-37T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.950-37T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.950-37T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.950-37T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.950-37T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.950-37T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.950-37T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.872-37T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.950-37T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.950-37T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.950-37T>C
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15870
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7515
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

3-170879173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170879173
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170879173
    reference: chr 3
allele count: 1
allele frequency: 8.454657670910904e-6
allele num: 118278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.950-48G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.950-48G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.950-48G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.950-48G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.950-48G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.950-48G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.950-48G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.872-48G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.950-48G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.950-48G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.950-48G>A
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

3-170884843-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884843
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884843
    reference: chr 3
allele count: 4
allele frequency: 4.255681334581667e-5
allele num: 93992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.949+41T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.949+41T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.949+41T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.949+41T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.871+41T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.949+41T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.949+41T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.949+41T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.949+41T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.949+41T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.949+41T>C
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9727
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

3-170884844-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884844
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884844
    reference: chr 3
allele count: 1
allele frequency: 1.06258633513973e-5
allele num: 94110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.949+40A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.949+40A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.949+40A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.949+40A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.949+40A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.949+40A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.949+40A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.949+40A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.871+40A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.949+40A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.949+40A>G
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8791
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

3-170884861-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884861
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884861
    reference: chr 3
allele count: 1
allele frequency: 1.026420052142139e-5
allele num: 97426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.949+23A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.949+23A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.949+23A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.949+23A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.871+23A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.949+23A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.949+23A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.949+23A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.949+23A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.949+23A>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.949+23A>G
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12193
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

3-170884874-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884874
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884874
    reference: chr 3
allele count: 1
allele frequency: 9.707418409148271e-6
allele num: 103014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.949+10A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.949+10A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.949+10A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.871+10A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.949+10A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.949+10A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.949+10A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.949+10A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.949+10A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.949+10A>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.949+10A>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

3-170884876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884876
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884876
    reference: chr 3
allele count: 17
allele frequency: 1.637638717632552e-4
allele num: 103808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.871+8G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.949+8G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.949+8G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.949+8G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.949+8G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.949+8G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.949+8G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.949+8G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.949+8G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.949+8G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.949+8G>A
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31185
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.949+8G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

3-170884877-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884877
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884877
    reference: chr 3
allele count: 13
allele frequency: 1.241761390772758e-4
allele num: 104690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.949+7C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.949+7C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.949+7C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.949+7C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.949+7C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.949+7C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.949+7C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.871+7C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.949+7C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.949+7C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.949+7C>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31884
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.949+7C>T
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-170884877-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884877
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884877
    reference: chr 3
allele count: 1
allele frequency: 9.552010698251983e-6
allele num: 104690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.949+7C>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.949+7C>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.949+7C>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.949+7C>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.949+7C>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.949+7C>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.949+7C>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.949+7C>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.949+7C>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.871+7C>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.949+7C>G
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.949+7C>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/3-170884881-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884881
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884881
    reference: chr 3
allele count: 23
allele frequency: 2.152308584903895e-4
allele num: 106862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.949+3T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.949+3T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.949+3T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.949+3T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.949+3T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.871+3T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.949+3T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.949+3T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.949+3T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.949+3T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.949+3T>G
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33788
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.949+3T>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

3-170884896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884896
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884896
    reference: chr 3
allele count: 1
allele frequency: 8.841576629944652e-6
allele num: 113102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.937C>T
  hgvsp: ENSP00000345352.6:p.Arg313Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.937C>T
  hgvsp: ENSP00000358332.5:p.Arg313Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.937C>T
  hgvsp: ENSP00000284483.8:p.Arg313Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.937C>T
  hgvsp: ENSP00000443278.1:p.Arg313Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.859C>T
  hgvsp: ENSP00000417338.1:p.Arg287Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.937C>T
  hgvsp: ENSP00000418916.1:p.Arg313Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.937C>T
  hgvsp: ENSP00000399511.2:p.Arg313Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.937C>T
  hgvsp: ENSP00000349880.5:p.Arg313Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.937C>T
  hgvsp: ENSP00000418156.1:p.Arg313Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.937C>T
  hgvsp: ENSP00000418378.1:p.Arg313Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.937C>T
  hgvsp: ENSP00000419990.1:p.Arg313Ter
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg313Ter
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

3-170884896-GCTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884896
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884893
    reference: chr 3
allele count: 1
allele frequency: 8.841576629944652e-6
allele num: 113102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.934_936delAAG
  hgvsp: ENSP00000419990.1:p.Lys312del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.934_936delAAG
  hgvsp: ENSP00000399511.2:p.Lys312del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.934_936delAAG
  hgvsp: ENSP00000418378.1:p.Lys312del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.934_936delAAG
  hgvsp: ENSP00000418156.1:p.Lys312del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.934_936delAAG
  hgvsp: ENSP00000443278.1:p.Lys312del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.934_936delAAG
  hgvsp: ENSP00000349880.5:p.Lys312del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.934_936delAAG
  hgvsp: ENSP00000345352.6:p.Lys312del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.856_858delAAG
  hgvsp: ENSP00000417338.1:p.Lys286del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.934_936delAAG
  hgvsp: ENSP00000418916.1:p.Lys312del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.934_936delAAG
  hgvsp: ENSP00000358332.5:p.Lys312del
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.934_936delAAG
  hgvsp: ENSP00000284483.8:p.Lys312del
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys312del
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: GCTT
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum

3-170884898-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884898
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884898
    reference: chr 3
allele count: 2
allele frequency: 1.757067805246604e-5
allele num: 113826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.935A>C
  hgvsp: ENSP00000345352.6:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.935A>C
  hgvsp: ENSP00000284483.8:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.935A>C
  hgvsp: ENSP00000419990.1:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.935A>C
  hgvsp: ENSP00000418156.1:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.935A>C
  hgvsp: ENSP00000443278.1:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.935A>C
  hgvsp: ENSP00000349880.5:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.935A>C
  hgvsp: ENSP00000399511.2:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.935A>C
  hgvsp: ENSP00000418378.1:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.935A>C
  hgvsp: ENSP00000418916.1:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.935A>C
  hgvsp: ENSP00000358332.5:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.857A>C
  hgvsp: ENSP00000417338.1:p.Lys286Thr
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37201
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys312Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-170884937-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884937
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884937
    reference: chr 3
allele count: 5
allele frequency: 4.214572305202468e-5
allele num: 118636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.896G>A
  hgvsp: ENSP00000418156.1:p.Arg299His
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.896G>A
  hgvsp: ENSP00000345352.6:p.Arg299His
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.896G>A
  hgvsp: ENSP00000418378.1:p.Arg299His
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.818G>A
  hgvsp: ENSP00000417338.1:p.Arg273His
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.896G>A
  hgvsp: ENSP00000419990.1:p.Arg299His
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.896G>A
  hgvsp: ENSP00000443278.1:p.Arg299His
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.896G>A
  hgvsp: ENSP00000358332.5:p.Arg299His
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.896G>A
  hgvsp: ENSP00000399511.2:p.Arg299His
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.896G>A
  hgvsp: ENSP00000418916.1:p.Arg299His
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.896G>A
  hgvsp: ENSP00000349880.5:p.Arg299His
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.896G>A
  hgvsp: ENSP00000284483.8:p.Arg299His
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11371
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg299His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-170884938-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884938
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884938
    reference: chr 3
allele count: 4
allele frequency: 3.364963994885255e-5
allele num: 118872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.895C>T
  hgvsp: ENSP00000443278.1:p.Arg299Cys
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.817C>T
  hgvsp: ENSP00000417338.1:p.Arg273Cys
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.895C>T
  hgvsp: ENSP00000358332.5:p.Arg299Cys
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.895C>T
  hgvsp: ENSP00000349880.5:p.Arg299Cys
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.895C>T
  hgvsp: ENSP00000419990.1:p.Arg299Cys
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.895C>T
  hgvsp: ENSP00000418156.1:p.Arg299Cys
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.895C>T
  hgvsp: ENSP00000345352.6:p.Arg299Cys
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.895C>T
  hgvsp: ENSP00000284483.8:p.Arg299Cys
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.895C>T
  hgvsp: ENSP00000399511.2:p.Arg299Cys
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.895C>T
  hgvsp: ENSP00000418916.1:p.Arg299Cys
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.895C>T
  hgvsp: ENSP00000418378.1:p.Arg299Cys
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37822
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg299Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

3-170884952-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884952
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884952
    reference: chr 3
allele count: 1
allele frequency: 8.364840900726069e-6
allele num: 119548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.881A>G
  hgvsp: ENSP00000419990.1:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.881A>G
  hgvsp: ENSP00000345352.6:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.881A>G
  hgvsp: ENSP00000349880.5:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.881A>G
  hgvsp: ENSP00000443278.1:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.881A>G
  hgvsp: ENSP00000358332.5:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.881A>G
  hgvsp: ENSP00000399511.2:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.881A>G
  hgvsp: ENSP00000284483.8:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.881A>G
  hgvsp: ENSP00000418156.1:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.881A>G
  hgvsp: ENSP00000418378.1:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.881A>G
  hgvsp: ENSP00000418916.1:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.803A>G
  hgvsp: ENSP00000417338.1:p.Asn268Ser
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12357
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn294Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

3-170884964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884964
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884964
    reference: chr 3
allele count: 2
allele frequency: 1.668056713928273e-5
allele num: 119900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.869G>A
  hgvsp: ENSP00000443278.1:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.869G>A
  hgvsp: ENSP00000345352.6:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.869G>A
  hgvsp: ENSP00000418378.1:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.869G>A
  hgvsp: ENSP00000349880.5:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.791G>A
  hgvsp: ENSP00000417338.1:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.869G>A
  hgvsp: ENSP00000418156.1:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.869G>A
  hgvsp: ENSP00000399511.2:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.869G>A
  hgvsp: ENSP00000358332.5:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.869G>A
  hgvsp: ENSP00000284483.8:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.869G>A
  hgvsp: ENSP00000418916.1:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.869G>A
  hgvsp: ENSP00000419990.1:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg290Gln
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

3-170884965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884965
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884965
    reference: chr 3
allele count: 1
allele frequency: 8.338475393159114e-6
allele num: 119926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.868C>T
  hgvsp: ENSP00000284483.8:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.868C>T
  hgvsp: ENSP00000358332.5:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.868C>T
  hgvsp: ENSP00000399511.2:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.790C>T
  hgvsp: ENSP00000417338.1:p.Arg264Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.868C>T
  hgvsp: ENSP00000418156.1:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.868C>T
  hgvsp: ENSP00000345352.6:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.868C>T
  hgvsp: ENSP00000349880.5:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.868C>T
  hgvsp: ENSP00000443278.1:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.868C>T
  hgvsp: ENSP00000418378.1:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.868C>T
  hgvsp: ENSP00000419990.1:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.868C>T
  hgvsp: ENSP00000418916.1:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg290Ter
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

3-170884966-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884966
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884966
    reference: chr 3
allele count: 11
allele frequency: 9.169264624977077e-5
allele num: 119966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.867A>G
  hgvsp: ENSP00000418378.1:p.Ile289Met
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.867A>G
  hgvsp: ENSP00000443278.1:p.Ile289Met
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.867A>G
  hgvsp: ENSP00000399511.2:p.Ile289Met
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.867A>G
  hgvsp: ENSP00000418156.1:p.Ile289Met
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.789A>G
  hgvsp: ENSP00000417338.1:p.Ile263Met
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.867A>G
  hgvsp: ENSP00000284483.8:p.Ile289Met
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.867A>G
  hgvsp: ENSP00000345352.6:p.Ile289Met
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.867A>G
  hgvsp: ENSP00000358332.5:p.Ile289Met
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.867A>G
  hgvsp: ENSP00000349880.5:p.Ile289Met
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.867A>G
  hgvsp: ENSP00000418916.1:p.Ile289Met
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.867A>G
  hgvsp: ENSP00000419990.1:p.Ile289Met
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12873
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile289Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

3-170884967-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884967
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884967
    reference: chr 3
allele count: 2
allele frequency: 1.666444474070124e-5
allele num: 120016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.866T>C
  hgvsp: ENSP00000443278.1:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.866T>C
  hgvsp: ENSP00000284483.8:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.788T>C
  hgvsp: ENSP00000417338.1:p.Ile263Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.866T>C
  hgvsp: ENSP00000358332.5:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.866T>C
  hgvsp: ENSP00000418916.1:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.866T>C
  hgvsp: ENSP00000418156.1:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.866T>C
  hgvsp: ENSP00000349880.5:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.866T>C
  hgvsp: ENSP00000419990.1:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.866T>C
  hgvsp: ENSP00000345352.6:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.866T>C
  hgvsp: ENSP00000418378.1:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.866T>C
  hgvsp: ENSP00000399511.2:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile289Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-170884972-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884972
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884972
    reference: chr 3
allele count: 3
allele frequency: 2.497835209485113e-5
allele num: 120104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.783A>G
  hgvsp: ENST00000468757.1:c.783A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.861A>G
  hgvsp: ENST00000475336.1:c.861A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.861A>G
  hgvsp: ENST00000357327.5:c.861A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.861A>G
  hgvsp: ENST00000470834.1:c.861A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.861A>G
  hgvsp: ENST00000436636.2:c.861A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.861A>G
  hgvsp: ENST00000284483.8:c.861A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.861A>G
  hgvsp: ENST00000341852.6:c.861A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.861A>G
  hgvsp: ENST00000538048.1:c.861A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.861A>G
  hgvsp: ENST00000488470.1:c.861A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.861A>G
  hgvsp: ENST00000460047.1:c.861A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.861A>G
  hgvsp: ENST00000369326.5:c.861A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro287Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-170884986-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884986
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884986
    reference: chr 3
allele count: 5
allele frequency: 4.156275976724854e-5
allele num: 120300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.769T>C
  hgvsp: ENST00000468757.1:c.769T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.847T>C
  hgvsp: ENST00000357327.5:c.847T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.847T>C
  hgvsp: ENST00000369326.5:c.847T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.847T>C
  hgvsp: ENST00000436636.2:c.847T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.847T>C
  hgvsp: ENST00000488470.1:c.847T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.847T>C
  hgvsp: ENST00000470834.1:c.847T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.847T>C
  hgvsp: ENST00000341852.6:c.847T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.847T>C
  hgvsp: ENST00000460047.1:c.847T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.847T>C
  hgvsp: ENST00000284483.8:c.847T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.847T>C
  hgvsp: ENST00000475336.1:c.847T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.847T>C
  hgvsp: ENST00000538048.1:c.847T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu283Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-170884987-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884987
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884987
    reference: chr 3
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.768A>G
  hgvsp: ENST00000468757.1:c.768A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.846A>G
  hgvsp: ENST00000475336.1:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.846A>G
  hgvsp: ENST00000436636.2:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.846A>G
  hgvsp: ENST00000341852.6:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.846A>G
  hgvsp: ENST00000369326.5:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.846A>G
  hgvsp: ENST00000357327.5:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.846A>G
  hgvsp: ENST00000488470.1:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.846A>G
  hgvsp: ENST00000460047.1:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.846A>G
  hgvsp: ENST00000284483.8:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.846A>G
  hgvsp: ENST00000538048.1:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.846A>G
  hgvsp: ENST00000470834.1:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln282Gln
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/3-170884992-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170884992
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170884992
    reference: chr 3
allele count: 1
allele frequency: 8.310203267571925e-6
allele num: 120334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.841G>T
  hgvsp: ENSP00000419990.1:p.Glu281Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.841G>T
  hgvsp: ENSP00000358332.5:p.Glu281Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.841G>T
  hgvsp: ENSP00000418916.1:p.Glu281Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.841G>T
  hgvsp: ENSP00000399511.2:p.Glu281Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.841G>T
  hgvsp: ENSP00000443278.1:p.Glu281Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.841G>T
  hgvsp: ENSP00000418378.1:p.Glu281Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.841G>T
  hgvsp: ENSP00000418156.1:p.Glu281Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.763G>T
  hgvsp: ENSP00000417338.1:p.Glu255Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.841G>T
  hgvsp: ENSP00000349880.5:p.Glu281Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.841G>T
  hgvsp: ENSP00000284483.8:p.Glu281Ter
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.841G>T
  hgvsp: ENSP00000345352.6:p.Glu281Ter
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu281Ter
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-170885002-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170885002
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170885002
    reference: chr 3
allele count: 1
allele frequency: 8.306199747491528e-6
allele num: 120392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.831A>G
  hgvsp: ENST00000369326.5:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.831A>G
  hgvsp: ENST00000460047.1:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.831A>G
  hgvsp: ENST00000284483.8:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.831A>G
  hgvsp: ENST00000538048.1:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.831A>G
  hgvsp: ENST00000475336.1:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.831A>G
  hgvsp: ENST00000436636.2:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.753A>G
  hgvsp: ENST00000468757.1:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.831A>G
  hgvsp: ENST00000488470.1:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.831A>G
  hgvsp: ENST00000357327.5:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.831A>G
  hgvsp: ENST00000470834.1:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.831A>G
  hgvsp: ENST00000341852.6:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg277Arg
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

3-170885008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170885008
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170885008
    reference: chr 3
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.825C>T
  hgvsp: ENST00000284483.8:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.825C>T
  hgvsp: ENST00000538048.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.825C>T
  hgvsp: ENST00000460047.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.825C>T
  hgvsp: ENST00000357327.5:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.825C>T
  hgvsp: ENST00000436636.2:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.747C>T
  hgvsp: ENST00000468757.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.825C>T
  hgvsp: ENST00000488470.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.825C>T
  hgvsp: ENST00000341852.6:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.825C>T
  hgvsp: ENST00000369326.5:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.825C>T
  hgvsp: ENST00000475336.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.825C>T
  hgvsp: ENST00000470834.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser275Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

3-170885027-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170885027
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170885027
    reference: chr 3
allele count: 2
allele frequency: 1.660384877214538e-5
allele num: 120454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.806G>C
  hgvsp: ENSP00000284483.8:p.Cys269Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.806G>C
  hgvsp: ENSP00000345352.6:p.Cys269Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.806G>C
  hgvsp: ENSP00000418156.1:p.Cys269Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.806G>C
  hgvsp: ENSP00000419990.1:p.Cys269Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.806G>C
  hgvsp: ENSP00000399511.2:p.Cys269Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.806G>C
  hgvsp: ENSP00000418916.1:p.Cys269Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.806G>C
  hgvsp: ENSP00000418378.1:p.Cys269Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.806G>C
  hgvsp: ENSP00000349880.5:p.Cys269Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.806G>C
  hgvsp: ENSP00000358332.5:p.Cys269Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.806G>C
  hgvsp: ENSP00000443278.1:p.Cys269Ser
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.728G>C
  hgvsp: ENSP00000417338.1:p.Cys243Ser
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys269Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

3-170885049-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170885049
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170885049
    reference: chr 3
allele count: 1
allele frequency: 8.314763694415805e-6
allele num: 120268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.784T>A
  hgvsp: ENSP00000358332.5:p.Phe262Ile
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.706T>A
  hgvsp: ENSP00000417338.1:p.Phe236Ile
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.784T>A
  hgvsp: ENSP00000418156.1:p.Phe262Ile
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.784T>A
  hgvsp: ENSP00000399511.2:p.Phe262Ile
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.784T>A
  hgvsp: ENSP00000418916.1:p.Phe262Ile
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.784T>A
  hgvsp: ENSP00000443278.1:p.Phe262Ile
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.784T>A
  hgvsp: ENSP00000345352.6:p.Phe262Ile
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.784T>A
  hgvsp: ENSP00000349880.5:p.Phe262Ile
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.784T>A
  hgvsp: ENSP00000418378.1:p.Phe262Ile
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.784T>A
  hgvsp: ENSP00000284483.8:p.Phe262Ile
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.784T>A
  hgvsp: ENSP00000419990.1:p.Phe262Ile
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe262Ile
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP

3-170885066-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170885066
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170885066
    reference: chr 3
allele count: 2
allele frequency: 1.664198106142555e-5
allele num: 120178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.696-7T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35131
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.774-7T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

3-170885073-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170885073
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170885073
    reference: chr 3
allele count: 1
allele frequency: 8.325701440346349e-6
allele num: 120110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.774-14C>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.774-14C>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.774-14C>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.774-14C>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.774-14C>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.696-14C>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.774-14C>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.774-14C>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.774-14C>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.774-14C>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.774-14C>A
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-170885076-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170885076
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170885076
    reference: chr 3
allele count: 1
allele frequency: 8.327088017320342e-6
allele num: 120090
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.696-17T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.774-17T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.774-17T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.774-17T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.774-17T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.774-17T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.774-17T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.774-17T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.774-17T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.774-17T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.774-17T>C
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13304
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

3-170885094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170885094
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170885094
    reference: chr 3
allele count: 5
allele frequency: 4.181371155229223e-5
allele num: 119578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.774-35G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.774-35G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.774-35G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.774-35G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.774-35G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.774-35G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.774-35G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.774-35G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.774-35G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.696-35G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.774-35G>A
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11852
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31262
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

3-170885095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170885095
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170885095
    reference: chr 3
allele count: 77
allele frequency: 6.443730334069759e-4
allele num: 119496
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.774-36C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.774-36C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.774-36C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.774-36C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.774-36C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.774-36C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.696-36C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.774-36C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.774-36C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.774-36C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.774-36C>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12202
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 30742
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

3-170885097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170885097
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170885097
    reference: chr 3
allele count: 69245
allele frequency: 5.824781292059219e-1
allele num: 118880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.774-38G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.696-38G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.774-38G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.774-38G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.774-38G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.774-38G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.774-38G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.774-38G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.774-38G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.774-38G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.774-38G>A
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 4.25e1
  variant carriers: 3646
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 4.75e1
  variant carriers: 2235
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 1311
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 12688
  bin: 2.25e1
  variant carriers: 7896
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 3.75e1
  variant carriers: 5792
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 5.75e1
  variant carriers: 817
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 1.25e1
  variant carriers: 1612
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 1.75e1
  variant carriers: 4723
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 9.75e1
  variant carriers: 1067
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 3.25e1
  variant carriers: 8199
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 251
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.75e1
  variant carriers: 9140
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.75e1
  variant carriers: 430
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 6.25e1
  variant carriers: 582
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 337
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.25e1
  variant carriers: 831
num of homozygotes: 20682
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

3-170885109-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170885109
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170885109
    reference: chr 3
allele count: 1
allele frequency: 8.528057308545113e-6
allele num: 117260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.774-50T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.774-50T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.696-50T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.774-50T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.774-50T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.774-50T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.774-50T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.774-50T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.774-50T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.774-50T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.774-50T>C
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/3-170892992-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170892992
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170892992
    reference: chr 3
allele count: 1
allele frequency: 1.384427954369255e-5
allele num: 72232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.773+49G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.773+49G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.773+49G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.773+49G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.695+49G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.773+49G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.773+49G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.773+49G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.773+49G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.773+49G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.773+49G>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/3-170893006-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170893006
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170893006
    reference: chr 3
allele count: 2
allele frequency: 2.70226449764903e-5
allele num: 74012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.773+35G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.773+35G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.773+35G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.773+35G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.773+35G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.773+35G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.773+35G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.695+35G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.773+35G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.773+35G>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.773+35G>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum

3-170893009-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170893009
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170893008
    reference: chr 3
allele count: 1
allele frequency: 1.330849081714134e-5
allele num: 75140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.773+31delT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.773+31delT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.773+31delT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.773+31delT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.773+31delT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.773+31delT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.773+31delT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.773+31delT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.695+31delT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.773+31delT
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.773+31delT
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8797
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: TA
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD

3-170893017-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170893017
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170893017
    reference: chr 3
allele count: 32
allele frequency: 4.080487618270384e-4
allele num: 78422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.695+24G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.773+24G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.773+24G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.773+24G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.773+24G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.773+24G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.773+24G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.773+24G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.773+24G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.773+24G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.773+24G>A
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11915
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 14135
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19615
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19362
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

3-170893018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170893018
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170893018
    reference: chr 3
allele count: 2
allele frequency: 2.505135527832056e-5
allele num: 79836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.773+23C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.695+23C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.773+23C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.773+23C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.773+23C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.773+23C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.773+23C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.773+23C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.773+23C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.773+23C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.773+23C>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-170893019-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170893019
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170893019
    reference: chr 3
allele count: 1
allele frequency: 1.231587762943987e-5
allele num: 81196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.773+22T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.695+22T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.773+22T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.773+22T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.773+22T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.773+22T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.773+22T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.773+22T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.773+22T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.773+22T>G
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.773+22T>G
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10485
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

3-170893025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170893025
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170893025
    reference: chr 3
allele count: 5
allele frequency: 5.895670219790586e-5
allele num: 84808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.773+16G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.773+16G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.773+16G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.773+16G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.773+16G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.773+16G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.773+16G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.695+16G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.773+16G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.773+16G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.773+16G>A
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20382
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6702
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum

3-170893026-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170893026
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170893026
    reference: chr 3
allele count: 1
allele frequency: 1.160119724355554e-5
allele num: 86198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.773+15C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.773+15C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.773+15C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.773+15C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.695+15C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.773+15C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.773+15C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.773+15C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.773+15C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.773+15C>T
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.773+15C>T
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16858
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

3-170893027-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170893027
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170893027
    reference: chr 3
allele count: 2
allele frequency: 2.28675966155957e-5
allele num: 87460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.773+14T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.773+14T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.773+14T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.773+14T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.773+14T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.695+14T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.773+14T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.773+14T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.773+14T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.773+14T>C
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.773+14T>C
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21976
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

3-170893038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170893038
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170893038
    reference: chr 3
allele count: 1
allele frequency: 1.061075506133016e-5
allele num: 94244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.773+3G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.773+3G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.773+3G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.773+3G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.695+3G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.773+3G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.773+3G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.773+3G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.773+3G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.773+3G>A
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.773+3G>A
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.773+3G>A
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-170893059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170893059
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170893059
    reference: chr 3
allele count: 4
allele frequency: 3.898863481295202e-5
allele num: 102594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.755G>A
  hgvsp: ENSP00000443278.1:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.755G>A
  hgvsp: ENSP00000399511.2:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.755G>A
  hgvsp: ENSP00000345352.6:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.755G>A
  hgvsp: ENSP00000349880.5:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.755G>A
  hgvsp: ENSP00000418378.1:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.755G>A
  hgvsp: ENSP00000284483.8:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.755G>A
  hgvsp: ENSP00000418916.1:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.677G>A
  hgvsp: ENSP00000417338.1:p.Arg226Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.755G>A
  hgvsp: ENSP00000418156.1:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.755G>A
  hgvsp: ENSP00000419990.1:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.755G>A
  hgvsp: ENSP00000358332.5:p.Arg252Gln
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29474
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg252Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

3-170893060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 170893060
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 170893060
    reference: chr 3
allele count: 2
allele frequency: 1.942464210096929e-5
allele num: 102962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000419990
  ensembl transcript: ENST00000470834
  gene symbol: TNIK
  hgvsc: ENST00000470834.1:c.754C>T
  hgvsp: ENSP00000419990.1:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000284483
  ensembl transcript: ENST00000284483
  gene symbol: TNIK
  hgvsc: ENST00000284483.8:c.754C>T
  hgvsp: ENSP00000284483.8:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000349880
  ensembl transcript: ENST00000357327
  gene symbol: TNIK
  hgvsc: ENST00000357327.5:c.754C>T
  hgvsp: ENSP00000349880.5:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000345352
  ensembl transcript: ENST00000341852
  gene symbol: TNIK
  hgvsc: ENST00000341852.6:c.754C>T
  hgvsp: ENSP00000345352.6:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000443278
  ensembl transcript: ENST00000538048
  gene symbol: TNIK
  hgvsc: ENST00000538048.1:c.754C>T
  hgvsp: ENSP00000443278.1:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000399511
  ensembl transcript: ENST00000436636
  gene symbol: TNIK
  hgvsc: ENST00000436636.2:c.754C>T
  hgvsp: ENSP00000399511.2:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418378
  ensembl transcript: ENST00000488470
  gene symbol: TNIK
  hgvsc: ENST00000488470.1:c.754C>T
  hgvsp: ENSP00000418378.1:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000417338
  ensembl transcript: ENST00000468757
  gene symbol: TNIK
  hgvsc: ENST00000468757.1:c.676C>T
  hgvsp: ENSP00000417338.1:p.Arg226Trp
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418156
  ensembl transcript: ENST00000475336
  gene symbol: TNIK
  hgvsc: ENST00000475336.1:c.754C>T
  hgvsp: ENSP00000418156.1:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000418916
  ensembl transcript: ENST00000460047
  gene symbol: TNIK
  hgvsc: ENST00000460047.1:c.754C>T
  hgvsp: ENSP00000418916.1:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/30765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154310
  ensembl protein: ENSP00000358332
  ensembl transcript: ENST00000369326
  gene symbol: TNIK
  hgvsc: ENST00000369326.5:c.754C>T
  hgvsp: ENSP00000358332.5:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/30765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg252Trp
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5259
bin: 6.25e1
variant carriers: 14

GenotypeQuality
all individuals: 305
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1252
bin: 9.75e1
variant carriers: 197

GenotypeQuality
all individuals: 866
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 29445
bin: 7.5e0
variant carriers: 16

GenotypeQuality
all individuals: 434
bin: 1.75e1
variant carriers: 18

GenotypeQuality
all individuals: 3359
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 535
bin: 3.25e1
variant carriers: 13

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 137
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 451
bin: 2.75e1
variant carriers: 15

GenotypeQuality
all individuals: 257
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 817
bin: 6.75e1
variant carriers: 10

African
type: Population
allele count: 182
allele frequency: 8.775313404050145e-2
allele num: 2074
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.151268115942029e-3
allele num: 8832
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.290655653071761e-4
allele num: 7748
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 1.231527093596059e-2
allele num: 406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.333e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.323e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e0

DP
type: SiteQuality
SIO_000300: 3.9353e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.34e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 592
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5632
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2785
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25866
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 224
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3701
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1478
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.224660397074191e-4
allele num: 1914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.176470588235294e-4
allele num: 8500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.62379e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.580000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: -1.537e0

QD
type: SiteQuality
SIO_000300: 4.73e0

GenotypeQuality
all individuals: 663
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24280
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6752
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1061
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2507
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.18962645729241e-4
allele num: 8406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.53236e5

QD
type: SiteQuality
SIO_000300: 1.402e1

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-1

FS
type: SiteQuality
SIO_000300: 1.427e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.729999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.784e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.276e0

GenotypeQuality
all individuals: 325
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6615
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24460
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3236
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 605
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 221
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2564
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.279831045406547e-4
allele num: 1894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7632
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.71e-2

DP
type: SiteQuality
SIO_000300: 3.53186e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

MQRankSum
type: SiteQuality
SIO_000300: -7.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.608e0

VQSLOD
type: SiteQuality
SIO_000300: -1.642e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 1450
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2184
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21314
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 211
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9076
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 296
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.617257808364214e-4
allele num: 7556
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.399568034557236e-4
allele num: 1852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.04e-2

QD
type: SiteQuality
SIO_000300: 1.146e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 5.985e0

VQSLOD
type: SiteQuality
SIO_000300: -1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

DP
type: SiteQuality
SIO_000300: 3.42731e5

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19909
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10383
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 531
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7490
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.42342e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.873e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.29e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

GenotypeQuality
all individuals: 3125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7865
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7709
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26730
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510528382828313e-5
allele num: 66202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.06e0

FS
type: SiteQuality
SIO_000300: 8.638999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.951636e6

QD
type: SiteQuality
SIO_000300: 1.144e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.668e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-2

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7869
bin: 9.75e1
variant carriers: 12

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.229004506349857e-3
allele num: 9764
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.5e0

QD
type: SiteQuality
SIO_000300: 1.617e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.970824e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
all individuals: 842
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7917
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7855
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66446
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.225039813793948e-4
allele num: 16326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.81e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 1.178e0

MQ
type: SiteQuality
SIO_000300: 6.039e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.72e-1

DP
type: SiteQuality
SIO_000300: 2.00826e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7855
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 139
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33529
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.221299462628236e-4
allele num: 16376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.508e0

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

DP
type: SiteQuality
SIO_000300: 2.012408e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

QD
type: SiteQuality
SIO_000300: 3.043e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.714e0

GenotypeDepth
all individuals: 19172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33677
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7954
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7854
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3092
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.582e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.226e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

MQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

FS
type: SiteQuality
SIO_000300: 2.207e0

DP
type: SiteQuality
SIO_000300: 2.013405e6

VQSLOD
type: SiteQuality
SIO_000300: -2.016e-1

GenotypeDepth
all individuals: 191
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8002
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34144
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7854
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3091
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.38e-1

MQ
type: SiteQuality
SIO_000300: 5.993e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.019256e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

GenotypeDepth
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7980
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7854
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 840
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34043
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21654501216545e-4
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.99e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

FS
type: SiteQuality
SIO_000300: 1.792e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.31e-1

QD
type: SiteQuality
SIO_000300: 1.043e1

DP
type: SiteQuality
SIO_000300: 2.019542e6

GenotypeDepth
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7984
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7853
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320185614849188e-4
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 8.522e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.913e0

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

DP
type: SiteQuality
SIO_000300: 2.019657e6

QD
type: SiteQuality
SIO_000300: 1.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

GenotypeDepth
all individuals: 1231
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33903
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7852
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7913
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.669e0

DP
type: SiteQuality
SIO_000300: 2.017409e6

FS
type: SiteQuality
SIO_000300: 5.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 982
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7845
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.932e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.801e0

QD
type: SiteQuality
SIO_000300: 6.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.25e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.986013e6

VQSLOD
type: SiteQuality
SIO_000300: -1.89e0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2928
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7843
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.500583430571762e-4
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66210
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.169e0

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 6.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.102e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

DP
type: SiteQuality
SIO_000300: 1.97088e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 1536
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29113
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7843
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2459
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742767514813524e-4
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.745e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

DP
type: SiteQuality
SIO_000300: 1.96723e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 2.937e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.011e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.91e-1

GenotypeQuality
all individuals: 1113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7247
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7842
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1941
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.845926655180901e-4
allele num: 16252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66170
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.921e-1

DP
type: SiteQuality
SIO_000300: 1.964313e6

FS
type: SiteQuality
SIO_000300: 1.0236e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.76e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.142e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

GenotypeQuality
all individuals: 93
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7834
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 748
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6946
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.94287e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24921
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7833
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 527
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744896178677369e-4
allele num: 11462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.535e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 1.930787e6

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
all individuals: 1603
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3437
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21449
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7832
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3238
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.160670280926565e-5
allele num: 16232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514050387596899e-5
allele num: 66048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 1.928e0

DP
type: SiteQuality
SIO_000300: 1.905167e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.686e1

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

GenotypeQuality
all individuals: 3839
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4900
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7824
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1786
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2642
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4683
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531112199902009e-5
allele num: 65312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16060
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.41e-1

FS
type: SiteQuality
SIO_000300: 6.687e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

DP
type: SiteQuality
SIO_000300: 1.853974e6

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.331e0

QD
type: SiteQuality
SIO_000300: 1.299e1

GenotypeQuality
all individuals: 407
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4860
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6931
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9176
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3729
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 8135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11517
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.591573353577529e-5
allele num: 52690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.55e-1

DP
type: SiteQuality
SIO_000300: 1.130424e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.281e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

QD
type: SiteQuality
SIO_000300: 1.631e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.89e-1

FS
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.01e-1

GenotypeQuality
all individuals: 2730
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11527
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4851
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6861
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3730
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.895734597156398e-5
allele num: 52750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

DP
type: SiteQuality
SIO_000300: 1.133341e6

VQSLOD
type: SiteQuality
SIO_000300: -1.597e0

FS
type: SiteQuality
SIO_000300: 3.245e0

MQ
type: SiteQuality
SIO_000300: 5.801e1

MQRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

QD
type: SiteQuality
SIO_000300: 1.198e1

GenotypeQuality
all individuals: 475
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5408
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3048
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3652
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21736
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11648
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 965
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13028
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

QD
type: SiteQuality
SIO_000300: 5.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.404e0

VQSLOD
type: SiteQuality
SIO_000300: -1.753e0

MQ
type: SiteQuality
SIO_000300: 5.787e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 1.26295e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29679
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9077
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2781
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3756
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.746419839329375e-5
allele num: 57260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.016e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.312e0

QD
type: SiteQuality
SIO_000300: 3.51e0

DP
type: SiteQuality
SIO_000300: 1.374048e6

GenotypeDepth
all individuals: 200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2069
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3782
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 405
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1374
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30394
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8601
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2578
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3847
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 784
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.198585984612185e-5
allele num: 57708
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.110864252388358e-4
allele num: 9002
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.117068811438785e-4
allele num: 8952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.4194464158978e-4
allele num: 14090
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.37211855104281e-3
allele num: 7288
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.386e0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

QD
type: SiteQuality
SIO_000300: 1.133e1

DP
type: SiteQuality
SIO_000300: 1.391303e6

FS
type: SiteQuality
SIO_000300: 6.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

GenotypeDepth
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2332
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1222
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.881365262868153e-5
allele num: 58128
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.099958000839983e-4
allele num: 14286
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.565988181221273e-4
allele num: 9138
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.913e0

VQSLOD
type: SiteQuality
SIO_000300: 6.830000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.403098e6

QD
type: SiteQuality
SIO_000300: 1.009e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeDepth
all individuals: 200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.999860002799944e-5
allele num: 14286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58128
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.913e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.009e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.403098e6

VQSLOD
type: SiteQuality
SIO_000300: 6.830000000000001e-1

GenotypeDepth
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7191
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33730
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3794
bin: 9.75e1
variant carriers: 23

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 2.527472527472528e-3
allele num: 9100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.415e1

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

FS
type: SiteQuality
SIO_000300: 4.942e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

DP
type: SiteQuality
SIO_000300: 1.433999e6

GenotypeDepth
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3990
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38191
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.598107840317065e-5
allele num: 62574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.561e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.521634e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

GenotypeDepth
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3990
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38191
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.24750499001996e-4
allele num: 8016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.561e1

DP
type: SiteQuality
SIO_000300: 1.521634e6

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeDepth
all individuals: 206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37900
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4986
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3641
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 631
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.176216490916021e-5
allele num: 62968
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.93e-1

FS
type: SiteQuality
SIO_000300: 2.405e0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.162e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.530282e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

QD
type: SiteQuality
SIO_000300: 1.112e1

GenotypeDepth
all individuals: 831
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 298
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5553
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.783803068141277e-4
allele num: 11212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.047572608417395e-5
allele num: 65626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.529519730804527e-4
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

FS
type: SiteQuality
SIO_000300: 1.557e0

DP
type: SiteQuality
SIO_000300: 1.603551e6

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.111e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.273e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

GenotypeDepth
all individuals: 201
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3818
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 371
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.562182548131026e-5
allele num: 65758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.529051987767584e-4
allele num: 6540
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 1.753e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

DP
type: SiteQuality
SIO_000300: 1.604452e6

GenotypeDepth
all individuals: 173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2237
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41831
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3819
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5964
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17096018735363e-4
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.615658e6

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

FS
type: SiteQuality
SIO_000300: 3.743e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

QD
type: SiteQuality
SIO_000300: 1.623e1

GenotypeDepth
all individuals: 207
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3822
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6030
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41773
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508250128201261e-5
allele num: 66302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

QD
type: SiteQuality
SIO_000300: 7.48e0

MQ
type: SiteQuality
SIO_000300: 5.828e1

FS
type: SiteQuality
SIO_000300: 5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.752e0

DP
type: SiteQuality
SIO_000300: 1.623221e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.58e-1

GenotypeDepth
all individuals: 218
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6031
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3823
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.98e-1

DP
type: SiteQuality
SIO_000300: 1.624699e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.345e0

QD
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: -3.343e0

FS
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

GenotypeDepth
all individuals: 639
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3832
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6074
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.657974859072137e-4
allele num: 66346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

DP
type: SiteQuality
SIO_000300: 1.625079e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

FS
type: SiteQuality
SIO_000300: 6.152e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.54e1

GenotypeDepth
all individuals: 193
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6081
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013409673045051e-5
allele num: 66370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.746e0

MQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.199e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.625575e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.501e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.062e0

GenotypeDepth
all individuals: 201
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3825
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21758188238159e-4
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023751023751024e-4
allele num: 9768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.537e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-1

DP
type: SiteQuality
SIO_000300: 1.627535e6

VQSLOD
type: SiteQuality
SIO_000300: 3.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeDepth
all individuals: 173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 583
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022076860179886e-4
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.013229104028864e-5
allele num: 66520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.632158e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

QD
type: SiteQuality
SIO_000300: 1.286e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

FS
type: SiteQuality
SIO_000300: 5.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.58e-1

GenotypeDepth
all individuals: 193
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2285
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42605
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3828
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1364
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.893e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

QD
type: SiteQuality
SIO_000300: 1.367e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

DP
type: SiteQuality
SIO_000300: 1.631753e6

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6153
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3828
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 582
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

DP
type: SiteQuality
SIO_000300: 1.63305e6

FS
type: SiteQuality
SIO_000300: 1.953e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.255e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.638e0

GenotypeDepth
all individuals: 165
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3831
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42683
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

FS
type: SiteQuality
SIO_000300: 2.224e0

DP
type: SiteQuality
SIO_000300: 1.634569e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

VQSLOD
type: SiteQuality
SIO_000300: 9.05e-1

GenotypeDepth
all individuals: 203
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42815
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6173
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3831
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516530178950561e-4
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.636152e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

FS
type: SiteQuality
SIO_000300: 3.093e0

MQRankSum
type: SiteQuality
SIO_000300: -8.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

QD
type: SiteQuality
SIO_000300: 1.677e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.068e0

GenotypeDepth
all individuals: 172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3835
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42851
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004085556356645e-5
allele num: 66576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.447e0

QD
type: SiteQuality
SIO_000300: 1.144e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

DP
type: SiteQuality
SIO_000300: 1.637272e6

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

MQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeDepth
all individuals: 202
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41943
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.02291325695581e-4
allele num: 9776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.421e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.75e0

VQSLOD
type: SiteQuality
SIO_000300: -1.437e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 9.893000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.637332e6

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41235
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 516
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011503945070168e-5
allele num: 66412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.625356e6

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.699999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2233
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 695
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40060
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5921
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.849e1

QD
type: SiteQuality
SIO_000300: 1.126e1

DP
type: SiteQuality
SIO_000300: 1.616185e6

FS
type: SiteQuality
SIO_000300: 2.698e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.643e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.056e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 517
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39098
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506886471173262e-5
allele num: 66362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.609245e6

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 4.387e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.106e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.486e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.101e0

GenotypeQuality
all individuals: 153
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3853
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 5389
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173984503404555e-4
allele num: 8518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.051071039574004e-5
allele num: 66104
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

QD
type: SiteQuality
SIO_000300: 1.437e1

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 7.365e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 1.576995e6

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 5368
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2215
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27802
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3400
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3166
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 177
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3925
bin: 9.75e1
variant carriers: 75

GenotypeQuality
all individuals: 2573
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 74
allele frequency: 8.705882352941176e-3
allele num: 8500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.839587932303164e-4
allele num: 16308
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.408e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 9.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

DP
type: SiteQuality
SIO_000300: 1.579041e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

GenotypeQuality
all individuals: 133
bin: 1.25e1
variant carriers: 71

GenotypeQuality
all individuals: 918
bin: 3.25e1
variant carriers: 313

GenotypeQuality
all individuals: 36646
bin: 9.75e1
variant carriers: 35951

GenotypeQuality
all individuals: 2317
bin: 6.75e1
variant carriers: 1504

GenotypeQuality
all individuals: 121
bin: 7.5e0
variant carriers: 58

GenotypeQuality
all individuals: 1729
bin: 8.25e1
variant carriers: 1532

GenotypeQuality
all individuals: 1225
bin: 5.25e1
variant carriers: 1041

GenotypeQuality
all individuals: 705
bin: 2.25e1
variant carriers: 139

GenotypeQuality
all individuals: 506
bin: 2.75e1
variant carriers: 171

GenotypeQuality
all individuals: 1121
bin: 3.75e1
variant carriers: 461

GenotypeQuality
all individuals: 186
bin: 2.5e0
variant carriers: 41

GenotypeQuality
all individuals: 824
bin: 5.75e1
variant carriers: 690

GenotypeQuality
all individuals: 153
bin: 1.75e1
variant carriers: 94

GenotypeQuality
all individuals: 1188
bin: 4.75e1
variant carriers: 762

GenotypeQuality
all individuals: 684
bin: 4.25e1
variant carriers: 345

GenotypeQuality
all individuals: 6559
bin: 6.25e1
variant carriers: 1286

GenotypeQuality
all individuals: 1882
bin: 7.75e1
variant carriers: 1578

GenotypeQuality
all individuals: 1507
bin: 9.25e1
variant carriers: 1404

GenotypeQuality
all individuals: 877
bin: 8.75e1
variant carriers: 800

Other
type: Population
allele count: 531
allele frequency: 5.96629213483146e-1
allele num: 890
num of homozygotes: 158

South Asian
type: Population
allele count: 10172
allele frequency: 6.238194529620998e-1
allele num: 16306
num of homozygotes: 3175

African
type: Population
allele count: 3287
allele frequency: 3.401283112582781e-1
allele num: 9664
num of homozygotes: 545

Latino
type: Population
allele count: 6750
allele frequency: 5.960791239844578e-1
allele num: 11324
num of homozygotes: 2007

East Asian
type: Population
allele count: 7188
allele frequency: 8.486422668240851e-1
allele num: 8470
num of homozygotes: 3045

European (Finnish)
type: Population
allele count: 3726
allele frequency: 5.697247706422018e-1
allele num: 6540
num of homozygotes: 1062

European (Non-Finnish)
type: Population
allele count: 37591
allele frequency: 5.722832871540359e-1
allele num: 65686
num of homozygotes: 10690

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 2.353e1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

DP
type: SiteQuality
SIO_000300: 1.959625e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.29e-2

GenotypeQuality
all individuals: 2160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5604
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3940
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5650
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4820
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6695
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 889
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542971763616726e-5
allele num: 64810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.259e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.879e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.141e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

DP
type: SiteQuality
SIO_000300: 1.648684e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.92e-1

QD
type: SiteQuality
SIO_000300: 1.366e1

GenotypeQuality
all individuals: 2535
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5056
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12906
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5957
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6684
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.484718978283556e-5
allele num: 40246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10696
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.674e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.776e0

MQRankSum
type: SiteQuality
SIO_000300: -1.27e0

FS
type: SiteQuality
SIO_000300: 1.7302e1

QD
type: SiteQuality
SIO_000300: 1.22e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 1.155854e6

GenotypeQuality
all individuals: 1062
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7101
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7188
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5140
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1200
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6687
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 466
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4320
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.235136343316942e-4
allele num: 4474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.426595486532395e-5
allele num: 41210
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.575e0

QD
type: SiteQuality
SIO_000300: 4.2e0

VQSLOD
type: SiteQuality
SIO_000300: -2.236e0

DP
type: SiteQuality
SIO_000300: 1.206181e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

GenotypeQuality
all individuals: 3819
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8917
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6689
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1184
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6733
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5028
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.389257896497348e-5
allele num: 41854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.226238e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.58e-1

FS
type: SiteQuality
SIO_000300: 7.197e0

MQ
type: SiteQuality
SIO_000300: 6.14e1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.574e1

GenotypeQuality
all individuals: 549
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6715
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 449
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13336
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 537
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 581
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4248
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1480
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

East Asian
type: Population
allele count: 32
allele frequency: 6.541291905151268e-3
allele num: 4892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43788
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.048e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.669e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.297339e6

GenotypeQuality
all individuals: 4018
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4792
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6691
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 926
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.552312946289972e-4
allele num: 6442
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.0e-4
allele num: 5000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

FS
type: SiteQuality
SIO_000300: 5.256e0

QD
type: SiteQuality
SIO_000300: 3.263e1

VQSLOD
type: SiteQuality
SIO_000300: -3.166e0

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

DP
type: SiteQuality
SIO_000300: 1.317674e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.03e-1

GenotypeQuality
all individuals: 1756
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18947
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3836
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16392
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4527
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6692
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 591
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.203419707385863e-5
allele num: 45384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7176
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.328602e6

MQ
type: SiteQuality
SIO_000300: 5.994e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

GenotypeQuality
all individuals: 615
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 155
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3488
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19903
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17320
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3189
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.725625539257981e-4
allele num: 11590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.313131313131313e-5
allele num: 47520
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.385105e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 3.751e0

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 1.015e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

GenotypeQuality
all individuals: 6701
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 475
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3026
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3212
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20950
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.353912808015164e-4
allele num: 7386
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

FS
type: SiteQuality
SIO_000300: 3.401e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 1.238e1

DP
type: SiteQuality
SIO_000300: 1.400002e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6704
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 724
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2866
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16423
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.070501078682786e-5
allele num: 49134
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.411567e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

VQSLOD
type: SiteQuality
SIO_000300: 2.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.24e-1

FS
type: SiteQuality
SIO_000300: 1.405e0

QD
type: SiteQuality
SIO_000300: 1.679e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

GenotypeDepth
all individuals: 1386
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13254
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6713
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.10898475510866e-5
allele num: 12332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53002
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.483837e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

FS
type: SiteQuality
SIO_000300: 1.481e0

QD
type: SiteQuality
SIO_000300: 1.497e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.124e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeDepth
all individuals: 184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9275
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6736
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1389
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.185825410544512e-5
allele num: 57850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5844
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.196744853997128e-4
allele num: 8356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7170
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4101e1

VQSLOD
type: SiteQuality
SIO_000300: -1.026e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.48e-1

QD
type: SiteQuality
SIO_000300: 1.238e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

DP
type: SiteQuality
SIO_000300: 1.572067e6

GenotypeDepth
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 4.25e1
variant carriers: 0