3-65425564-CTGCTGCTGCTGCTGCTGCTGCTGCTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425564
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425537
    reference: chr 3
allele count: 1
allele frequency: 9.394787771744237e-6
allele num: 106442
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsp: ENSP00000420796.1:p.Gln199_Gln207del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsp: ENSP00000418177.2:p.Gln288_Gln296del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln413_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsp: ENSP00000418044.1:p.Gln163_Gln171del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsp: ENSP00000418862.2:p.Gln294_Gln302del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln413_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln413_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln413_Gln421del
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6549
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln413_Gln421del
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: CTGCTGCTGCTGCTGCTGCTGCTGCTGT
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

3-65425567-CTGCTGCTGCTGCTGCTGCTGCTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425567
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425543
    reference: chr 3
allele count: 2
allele frequency: 1.708321232724601e-5
allele num: 117074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln414_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsp: ENSP00000418862.2:p.Gln295_Gln302del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsp: ENSP00000418177.2:p.Gln289_Gln296del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsp: ENSP00000420796.1:p.Gln200_Gln207del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln414_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln414_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln414_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsp: ENSP00000418044.1:p.Gln164_Gln171del
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln414_Gln421del
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: CTGCTGCTGCTGCTGCTGCTGCTGT
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

3-65425570-CTGCTGCTGCTGCTGCTGCTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425570
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425549
    reference: chr 3
allele count: 4
allele frequency: 3.368307593849471e-5
allele num: 118754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln415_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsp: ENSP00000420796.1:p.Gln201_Gln207del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsp: ENSP00000418862.2:p.Gln296_Gln302del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln415_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsp: ENSP00000418044.1:p.Gln165_Gln171del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln415_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln415_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsp: ENSP00000418177.2:p.Gln290_Gln296del
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln415_Gln421del
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: CTGCTGCTGCTGCTGCTGCTGT
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

3-65425570-CTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425570
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425537
    reference: chr 3
allele count: 1
allele frequency: 8.420768984623676e-6
allele num: 118754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln411_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsp: ENSP00000418177.2:p.Gln286_Gln296del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln411_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln411_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsp: ENSP00000420796.1:p.Gln197_Gln207del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsp: ENSP00000418044.1:p.Gln161_Gln171del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsp: ENSP00000418862.2:p.Gln292_Gln302del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln411_Gln421del
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln411_Gln421del
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCTGT
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

3-65425571-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425571
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425571
    reference: chr 3
allele count: 1
allele frequency: 8.384759860477596e-6
allele num: 119264
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1253A>G
  hgvsp: ENSP00000385450.2:p.Gln418Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.503A>G
  hgvsp: ENSP00000418044.1:p.Gln168Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.878A>G
  hgvsp: ENSP00000418177.2:p.Gln293Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1253A>G
  hgvsp: ENSP00000420323.1:p.Gln418Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1253A>G
  hgvsp: ENSP00000424369.1:p.Gln418Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1253A>G
  hgvsp: ENSP00000331157.7:p.Gln418Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.611A>G
  hgvsp: ENSP00000420796.1:p.Gln204Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1780A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.391A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.895A>G
  hgvsp: ENSP00000418862.2:p.Gln299Arg
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln418Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

3-65425573-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425573
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425573
    reference: chr 3
allele count: 1
allele frequency: 8.340561820244212e-6
allele num: 119896
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1251G>A
  hgvsp: ENST00000402939.2:c.1251G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.501G>A
  hgvsp: ENST00000479287.1:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.389G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1778G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.876G>A
  hgvsp: ENST00000463103.2:c.876G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.609G>A
  hgvsp: ENST00000472257.1:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1251G>A
  hgvsp: ENST00000330909.8:c.1251G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1251G>A
  hgvsp: ENST00000483466.1:c.1251G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1251G>A
  hgvsp: ENST00000497477.2:c.1251G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.893G>A
  hgvsp: ENST00000460329.2:c.893G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6698
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6941
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln417Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

3-65425573-CTGCTGCTGCTGCTGCTGTTGCTGCTGCTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425573
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425543
    reference: chr 3
allele count: 1
allele frequency: 8.340561820244212e-6
allele num: 119896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsp: ENSP00000418044.1:p.Gln162_Gln171del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsp: ENSP00000418177.2:p.Gln287_Gln296del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln412_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsp: ENSP00000420796.1:p.Gln198_Gln207del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln412_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln412_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsp: ENSP00000418862.2:p.Gln293_Gln302del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln412_Gln421del
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6698
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln412_Gln421del
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: CTGCTGCTGCTGCTGCTGTTGCTGCTGCTGT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum

3-65425576-C-CTGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425576
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425579
    reference: chr 3
allele count: 1
allele frequency: 8.297515723792297e-6
allele num: 120518
alternate allele: CTGA
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.872_873insTCA
  hgvsp: ENSP00000418177.2:p.Gln290_Gln291insHis
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.497_498insTCA
  hgvsp: ENSP00000418044.1:p.Gln165_Gln166insHis
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.385_386insTCA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.605_606insTCA
  hgvsp: ENSP00000420796.1:p.Gln201_Gln202insHis
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1247_1248insTCA
  hgvsp: ENSP00000385450.2:p.Gln415_Gln416insHis
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.889_890insTCA
  hgvsp: ENSP00000418862.2:p.Gln296_Gln297insHis
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1247_1248insTCA
  hgvsp: ENSP00000331157.7:p.Gln415_Gln416insHis
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1247_1248insTCA
  hgvsp: ENSP00000420323.1:p.Gln415_Gln416insHis
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1774_1775insTCA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1247_1248insTCA
  hgvsp: ENSP00000424369.1:p.Gln415_Gln416insHis
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 6768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln415_Gln416insHis
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

3-65425576-CTGCTGCTGCTGCTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425576
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425561
    reference: chr 3
allele count: 3
allele frequency: 2.489254717137689e-5
allele num: 120518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln417_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsp: ENSP00000420796.1:p.Gln203_Gln207del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln417_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsp: ENSP00000418044.1:p.Gln167_Gln171del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln417_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsp: ENSP00000418862.2:p.Gln298_Gln302del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln417_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsp: ENSP00000418177.2:p.Gln292_Gln296del
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6768
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln417_Gln421del
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
reference allele: CTGCTGCTGCTGCTGT
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-65425577-T-TGCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425577
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425580
    reference: chr 3
allele count: 4
allele frequency: 3.327953142419755e-5
allele num: 120194
alternate allele: TGCC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.888_889insGGC
  hgvsp: ENSP00000418862.2:p.Gln296_Gln297insArg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.384_385insGGC
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.496_497insGGC
  hgvsp: ENSP00000418044.1:p.Gln165_Gln166insArg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1246_1247insGGC
  hgvsp: ENSP00000385450.2:p.Gln415_Gln416insArg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.604_605insGGC
  hgvsp: ENSP00000420796.1:p.Gln201_Gln202insArg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1246_1247insGGC
  hgvsp: ENSP00000424369.1:p.Gln415_Gln416insArg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1773_1774insGGC
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.871_872insGGC
  hgvsp: ENSP00000418177.2:p.Gln290_Gln291insArg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1246_1247insGGC
  hgvsp: ENSP00000420323.1:p.Gln415_Gln416insArg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1246_1247insGGC
  hgvsp: ENSP00000331157.7:p.Gln415_Gln416insArg
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln415_Gln416insArg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

3-65425579-CTGCTGCTGCTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425579
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425567
    reference: chr 3
allele count: 252
allele frequency: 2.087959433930998e-3
allele num: 120692
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln418_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsp: ENSP00000418177.2:p.Gln293_Gln296del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln418_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsp: ENSP00000418862.2:p.Gln299_Gln302del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln418_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsp: ENSP00000418044.1:p.Gln168_Gln171del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln418_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsp: ENSP00000420796.1:p.Gln204_Gln207del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 4.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Gln418_Gln421del
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: CTGCTGCTGCTGT
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

3-65425579-C-CTGCTGCTGCTGCTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425579
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425594
    reference: chr 3
allele count: 5
allele frequency: 4.142776654624996e-5
allele num: 120692
alternate allele: CTGCTGCTGCTGCTGT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsp: ENSP00000420796.1:p.Gln197_Gln201dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsp: ENSP00000418177.2:p.Gln286_Gln290dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsp: ENSP00000418044.1:p.Gln161_Gln165dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsp: ENSP00000418862.2:p.Gln292_Gln296dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln411_Gln415dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln411_Gln415dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln411_Gln415dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln411_Gln415dup
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln411_Gln415dup
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-65425579-C-CTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425579
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425582
    reference: chr 3
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: CTGT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.382_383insACA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.494_495insACA
  hgvsp: ENSP00000418044.1:p.Gln165dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1771_1772insACA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1244_1245insACA
  hgvsp: ENSP00000331157.7:p.Gln415dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1244_1245insACA
  hgvsp: ENSP00000420323.1:p.Gln415dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1244_1245insACA
  hgvsp: ENSP00000385450.2:p.Gln415dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.602_603insACA
  hgvsp: ENSP00000420796.1:p.Gln201dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1244_1245insACA
  hgvsp: ENSP00000424369.1:p.Gln415dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.886_887insACA
  hgvsp: ENSP00000418862.2:p.Gln296dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.869_870insACA
  hgvsp: ENSP00000418177.2:p.Gln290dup
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln415dup
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

3-65425579-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425579
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425579
    reference: chr 3
allele count: 2
allele frequency: 1.657110661849998e-5
allele num: 120692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.887G>A
  hgvsp: ENST00000460329.2:c.887G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1772G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.495G>A
  hgvsp: ENST00000479287.1:c.495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1245G>A
  hgvsp: ENST00000330909.8:c.1245G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1245G>A
  hgvsp: ENST00000402939.2:c.1245G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.603G>A
  hgvsp: ENST00000472257.1:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1245G>A
  hgvsp: ENST00000483466.1:c.1245G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1245G>A
  hgvsp: ENST00000497477.2:c.1245G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.870G>A
  hgvsp: ENST00000463103.2:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.383G>A
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln415Gln
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

3-65425579-CTGCTGCTGCTGTTGCTGCTGCTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425579
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425555
    reference: chr 3
allele count: 3
allele frequency: 2.485665992774998e-5
allele num: 120692
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsp: ENSP00000418862.2:p.Gln295_Gln302del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln414_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsp: ENSP00000420796.1:p.Gln200_Gln207del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln414_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsp: ENSP00000418044.1:p.Gln164_Gln171del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln414_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsp: ENSP00000418177.2:p.Gln289_Gln296del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln414_Gln421del
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln414_Gln421del
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CTGCTGCTGCTGTTGCTGCTGCTGT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

3-65425580-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425580
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425580
    reference: chr 3
allele count: 20
allele frequency: 1.663063362714119e-4
allele num: 120260
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1244A>T
  hgvsp: ENSP00000385450.2:p.Gln415Leu
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1244A>T
  hgvsp: ENSP00000424369.1:p.Gln415Leu
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1244A>T
  hgvsp: ENSP00000331157.7:p.Gln415Leu
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.494A>T
  hgvsp: ENSP00000418044.1:p.Gln165Leu
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.869A>T
  hgvsp: ENSP00000418177.2:p.Gln290Leu
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.886A>T
  hgvsp: ENSP00000418862.2:p.Gln296Leu
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1771A>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.602A>T
  hgvsp: ENSP00000420796.1:p.Gln201Leu
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.382A>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1244A>T
  hgvsp: ENSP00000420323.1:p.Gln415Leu
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6803
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln415Leu
num of homozygotes: 1
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-65425582-CTGCTGCTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425582
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425573
    reference: chr 3
allele count: 228
allele frequency: 1.897849104348405e-3
allele num: 120136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.483_491delACAGCAGCA
  hgvsp: ENSP00000418044.1:p.Gln169_Gln171del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln419_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln419_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.858_866delACAGCAGCA
  hgvsp: ENSP00000418177.2:p.Gln294_Gln296del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.875_883delACAGCAGCA
  hgvsp: ENSP00000418862.2:p.Gln300_Gln302del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.591_599delACAGCAGCA
  hgvsp: ENSP00000420796.1:p.Gln205_Gln207del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln419_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln419_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.371_379delACAGCAGCA
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6752
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 3
hgvs: p.Gln419_Gln421del
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: CTGCTGCTGT
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-65425584-G-GCTGCTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425584
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425590
    reference: chr 3
allele count: 1
allele frequency: 8.382791804982731e-6
allele num: 119292
alternate allele: GCTGCTC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1239_1240insGAGCAG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1766_1767insGAGCAG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1239_1240insGAGCAG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.377_378insGAGCAG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.597_598insGAGCAG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1239_1240insGAGCAG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.881_882insGAGCAG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.864_865insGAGCAG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1239_1240insGAGCAG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.489_490insGAGCAG
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6059
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln413_Gln414insGluGln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-65425585-CTGCTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425585
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425579
    reference: chr 3
allele count: 2
allele frequency: 1.676811375488371e-5
allele num: 119274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.483_488delACAGCA
  hgvsp: ENSP00000418044.1:p.Gln170_Gln171del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1233_1238delACAGCA
  hgvsp: ENSP00000424369.1:p.Gln420_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.371_376delACAGCA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1233_1238delACAGCA
  hgvsp: ENSP00000385450.2:p.Gln420_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1233_1238delACAGCA
  hgvsp: ENSP00000331157.7:p.Gln420_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1760_1765delACAGCA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.875_880delACAGCA
  hgvsp: ENSP00000418862.2:p.Gln301_Gln302del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1233_1238delACAGCA
  hgvsp: ENSP00000420323.1:p.Gln420_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.858_863delACAGCA
  hgvsp: ENSP00000418177.2:p.Gln295_Gln296del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.591_596delACAGCA
  hgvsp: ENSP00000420796.1:p.Gln206_Gln207del
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6059
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln420_Gln421del
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: CTGCTGT
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

3-65425588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425588
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425588
    reference: chr 3
allele count: 15
allele frequency: 1.260843251966915e-4
allele num: 118968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.861G>A
  hgvsp: ENST00000463103.2:c.861G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1763G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.594G>A
  hgvsp: ENST00000472257.1:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1236G>A
  hgvsp: ENST00000497477.2:c.1236G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1236G>A
  hgvsp: ENST00000330909.8:c.1236G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1236G>A
  hgvsp: ENST00000483466.1:c.1236G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.878G>A
  hgvsp: ENST00000460329.2:c.878G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.486G>A
  hgvsp: ENST00000479287.1:c.486G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1236G>A
  hgvsp: ENST00000402939.2:c.1236G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.374G>A
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln412Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

3-65425590-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425590
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425591
    reference: chr 3
allele count: 6
allele frequency: 5.023863350916855e-5
allele num: 119430
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1233_1234insG
  hgvsp: ENSP00000424369.1:p.Gln412AlafsTer54
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.858_859insG
  hgvsp: ENSP00000418177.2:p.Gln287AlafsTer54
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1233_1234insG
  hgvsp: ENSP00000331157.7:p.Gln412AlafsTer54
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.591_592insG
  hgvsp: ENSP00000420796.1:p.Gln198AlafsTer54
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1233_1234insG
  hgvsp: ENSP00000385450.2:p.Gln412AlafsTer54
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.371_372insG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.875_876insG
  hgvsp: ENSP00000418862.2:p.Gln293AlafsTer54
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1760_1761insG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.483_484insG
  hgvsp: ENSP00000418044.1:p.Gln162AlafsTer?
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1233_1234insG
  hgvsp: ENSP00000420323.1:p.Gln412AlafsTer54
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6058
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Gln412AlafsTer54
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

3-65425591-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425591
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425591
    reference: chr 3
allele count: 10
allele frequency: 8.64902266043937e-5
allele num: 115620
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1233A>G
  hgvsp: ENST00000497477.2:c.1233A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1233A>G
  hgvsp: ENST00000483466.1:c.1233A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.483A>G
  hgvsp: ENST00000479287.1:c.483A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1233A>G
  hgvsp: ENST00000402939.2:c.1233A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1233A>G
  hgvsp: ENST00000330909.8:c.1233A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.858A>G
  hgvsp: ENST00000463103.2:c.858A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.591A>G
  hgvsp: ENST00000472257.1:c.591A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.875A>G
  hgvsp: ENST00000460329.2:c.875A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.371A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1760A>G
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln411Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

3-65425591-T-TGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425591
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425593
    reference: chr 3
allele count: 7
allele frequency: 6.054315862307559e-5
allele num: 115620
alternate allele: TGC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1232_1233insGC
  hgvsp: ENSP00000331157.7:p.Gln412HisfsTer56
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1232_1233insGC
  hgvsp: ENSP00000424369.1:p.Gln412HisfsTer56
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1232_1233insGC
  hgvsp: ENSP00000420323.1:p.Gln412HisfsTer56
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.482_483insGC
  hgvsp: ENSP00000418044.1:p.Gln162HisfsTer?
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.370_371insGC
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1232_1233insGC
  hgvsp: ENSP00000385450.2:p.Gln412HisfsTer56
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.874_875insGC
  hgvsp: ENSP00000418862.2:p.Gln293HisfsTer56
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1759_1760insGC
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.590_591insGC
  hgvsp: ENSP00000420796.1:p.Gln198HisfsTer56
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.857_858insGC
  hgvsp: ENSP00000418177.2:p.Gln287HisfsTer56
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln412HisfsTer56
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-65425591-T-TTGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425591
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425594
    reference: chr 3
allele count: 5
allele frequency: 4.324511330219685e-5
allele num: 115620
alternate allele: TTGC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1757_1759dupGCA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1230_1232dupGCA
  hgvsp: ENSP00000424369.1:p.Gln411dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1230_1232dupGCA
  hgvsp: ENSP00000385450.2:p.Gln411dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1230_1232dupGCA
  hgvsp: ENSP00000420323.1:p.Gln411dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.872_874dupGCA
  hgvsp: ENSP00000418862.2:p.Gln292dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.480_482dupGCA
  hgvsp: ENSP00000418044.1:p.Gln161dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.588_590dupGCA
  hgvsp: ENSP00000420796.1:p.Gln197dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.368_370dupGCA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.855_857dupGCA
  hgvsp: ENSP00000418177.2:p.Gln286dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1230_1232dupGCA
  hgvsp: ENSP00000331157.7:p.Gln411dup
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln411dup
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

3-65425591-T-TTGCTGCTGCTGTTGCTGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425591
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425609
    reference: chr 3
allele count: 1
allele frequency: 8.64902266043937e-6
allele num: 115620
alternate allele: TTGCTGCTGCTGTTGCTGC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsp: ENSP00000420796.1:p.Gln192_Gln197dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln406_Gln411dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln406_Gln411dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln406_Gln411dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsp: ENSP00000418862.2:p.Gln287_Gln292dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsp: ENSP00000418044.1:p.Gln156_Gln161dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln406_Gln411dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsp: ENSP00000418177.2:p.Gln281_Gln286dup
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7569
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln406_Gln411dup
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

3-65425594-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425594
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425594
    reference: chr 3
allele count: 3
allele frequency: 2.511258810332993e-5
allele num: 119462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1230G>A
  hgvsp: ENST00000497477.2:c.1230G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1230G>A
  hgvsp: ENST00000483466.1:c.1230G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1230G>A
  hgvsp: ENST00000330909.8:c.1230G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.855G>A
  hgvsp: ENST00000463103.2:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.872G>A
  hgvsp: ENST00000460329.2:c.872G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1230G>A
  hgvsp: ENST00000402939.2:c.1230G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.480G>A
  hgvsp: ENST00000479287.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.368G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.588G>A
  hgvsp: ENST00000472257.1:c.588G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1757G>A
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln410Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

3-65425596-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425596
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425596
    reference: chr 3
allele count: 1
allele frequency: 8.277734549608463e-6
allele num: 120806
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1228C>T
  hgvsp: ENSP00000331157.7:p.Gln410Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.870C>T
  hgvsp: ENSP00000418862.2:p.Gln291Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1755C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.586C>T
  hgvsp: ENSP00000420796.1:p.Gln196Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.478C>T
  hgvsp: ENSP00000418044.1:p.Gln160Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1228C>T
  hgvsp: ENSP00000420323.1:p.Gln410Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.853C>T
  hgvsp: ENSP00000418177.2:p.Gln285Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.366C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1228C>T
  hgvsp: ENSP00000424369.1:p.Gln410Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1228C>T
  hgvsp: ENSP00000385450.2:p.Gln410Ter
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln410Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum

3-65425597-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425597
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425597
    reference: chr 3
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1227G>A
  hgvsp: ENST00000483466.1:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1227G>A
  hgvsp: ENST00000402939.2:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.365G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1754G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1227G>A
  hgvsp: ENST00000497477.2:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.585G>A
  hgvsp: ENST00000472257.1:c.585G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.852G>A
  hgvsp: ENST00000463103.2:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.869G>A
  hgvsp: ENST00000460329.2:c.869G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.477G>A
  hgvsp: ENST00000479287.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1227G>A
  hgvsp: ENST00000330909.8:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln409Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS

3-65425600-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425600
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425600
    reference: chr 3
allele count: 3
allele frequency: 2.482539472377611e-5
allele num: 120844
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1224G>C
  hgvsp: ENSP00000331157.7:p.Gln408His
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1751G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1224G>C
  hgvsp: ENSP00000385450.2:p.Gln408His
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1224G>C
  hgvsp: ENSP00000424369.1:p.Gln408His
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.582G>C
  hgvsp: ENSP00000420796.1:p.Gln194His
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.474G>C
  hgvsp: ENSP00000418044.1:p.Gln158His
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1224G>C
  hgvsp: ENSP00000420323.1:p.Gln408His
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.849G>C
  hgvsp: ENSP00000418177.2:p.Gln283His
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.362G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.866G>C
  hgvsp: ENSP00000418862.2:p.Gln289His
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7830
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln408His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

3-65425603-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425603
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425603
    reference: chr 3
allele count: 29
allele frequency: 2.427794056090414e-4
allele num: 119450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.359A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1748A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1221A>G
  hgvsp: ENST00000402939.2:c.1221A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.579A>G
  hgvsp: ENST00000472257.1:c.579A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1221A>G
  hgvsp: ENST00000497477.2:c.1221A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.846A>G
  hgvsp: ENST00000463103.2:c.846A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1221A>G
  hgvsp: ENST00000330909.8:c.1221A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.471A>G
  hgvsp: ENST00000479287.1:c.471A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.863A>G
  hgvsp: ENST00000460329.2:c.863A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1221A>G
  hgvsp: ENST00000483466.1:c.1221A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln407Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

3-65425603-TTGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425603
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425600
    reference: chr 3
allele count: 23
allele frequency: 1.925491837588949e-4
allele num: 119450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1218_1220delGCA
  hgvsp: ENSP00000420323.1:p.Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.576_578delGCA
  hgvsp: ENSP00000420796.1:p.Gln207del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.860_862delGCA
  hgvsp: ENSP00000418862.2:p.Gln302del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.843_845delGCA
  hgvsp: ENSP00000418177.2:p.Gln296del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1218_1220delGCA
  hgvsp: ENSP00000331157.7:p.Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.468_470delGCA
  hgvsp: ENSP00000418044.1:p.Gln171del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1745_1747delGCA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1218_1220delGCA
  hgvsp: ENSP00000424369.1:p.Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.356_358delGCA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1218_1220delGCA
  hgvsp: ENSP00000385450.2:p.Gln421del
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Gln421del
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: TTGC
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

3-65425603-T-TTGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425603
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425606
    reference: chr 3
allele count: 4
allele frequency: 3.348681456676434e-5
allele num: 119450
alternate allele: TTGC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.860_862dupGCA
  hgvsp: ENSP00000418862.2:p.Gln288dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1218_1220dupGCA
  hgvsp: ENSP00000385450.2:p.Gln407dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.468_470dupGCA
  hgvsp: ENSP00000418044.1:p.Gln157dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.576_578dupGCA
  hgvsp: ENSP00000420796.1:p.Gln193dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1218_1220dupGCA
  hgvsp: ENSP00000420323.1:p.Gln407dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.843_845dupGCA
  hgvsp: ENSP00000418177.2:p.Gln282dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1218_1220dupGCA
  hgvsp: ENSP00000331157.7:p.Gln407dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1218_1220dupGCA
  hgvsp: ENSP00000424369.1:p.Gln407dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1745_1747dupGCA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.356_358dupGCA
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37986
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Gln407dup
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-65425603-TTGCTGCTGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425603
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425594
    reference: chr 3
allele count: 23
allele frequency: 1.925491837588949e-4
allele num: 119450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsp: ENSP00000385450.2:p.Gln419_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.570_578delGCAGCAGCA
  hgvsp: ENSP00000420796.1:p.Gln205_Gln207del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsp: ENSP00000424369.1:p.Gln419_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.837_845delGCAGCAGCA
  hgvsp: ENSP00000418177.2:p.Gln294_Gln296del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.350_358delGCAGCAGCA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.462_470delGCAGCAGCA
  hgvsp: ENSP00000418044.1:p.Gln169_Gln171del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsp: ENSP00000420323.1:p.Gln419_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsp: ENSP00000331157.7:p.Gln419_Gln421del
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.854_862delGCAGCAGCA
  hgvsp: ENSP00000418862.2:p.Gln300_Gln302del
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln419_Gln421del
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: TTGCTGCTGC
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-65425603-TTGCTGCTGCTGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425603
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425591
    reference: chr 3
allele count: 9
allele frequency: 7.534533277521975e-5
allele num: 119450
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8031
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37986
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 65858
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6564
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9968
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 8
  allele frequency: 4.900159255175794e-4
  allele num: 16326
  num of homozygotes: 0
population: Latino
population: East Asian
population: Other
reference allele: TTGCTGCTGCTGC
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-65425606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425606
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425606
    reference: chr 3
allele count: 9
allele frequency: 7.52697164840679e-5
allele num: 119570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.576G>A
  hgvsp: ENST00000472257.1:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.843G>A
  hgvsp: ENST00000463103.2:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.468G>A
  hgvsp: ENST00000479287.1:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1218G>A
  hgvsp: ENST00000330909.8:c.1218G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1218G>A
  hgvsp: ENST00000497477.2:c.1218G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.356G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1745G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1218G>A
  hgvsp: ENST00000483466.1:c.1218G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1218G>A
  hgvsp: ENST00000402939.2:c.1218G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.860G>A
  hgvsp: ENST00000460329.2:c.860G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln406Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

3-65425607-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425607
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425607
    reference: chr 3
allele count: 1
allele frequency: 8.29655195300833e-6
allele num: 120532
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1744A>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.355A>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1217A>C
  hgvsp: ENSP00000331157.7:p.Gln406Pro
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.842A>C
  hgvsp: ENSP00000418177.2:p.Gln281Pro
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.467A>C
  hgvsp: ENSP00000418044.1:p.Gln156Pro
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1217A>C
  hgvsp: ENSP00000385450.2:p.Gln406Pro
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.575A>C
  hgvsp: ENSP00000420796.1:p.Gln192Pro
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1217A>C
  hgvsp: ENSP00000424369.1:p.Gln406Pro
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.859A>C
  hgvsp: ENSP00000418862.2:p.Gln287Pro
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1217A>C
  hgvsp: ENSP00000420323.1:p.Gln406Pro
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6908
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln406Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

3-65425608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425608
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425608
    reference: chr 3
allele count: 3
allele frequency: 2.488924286923192e-5
allele num: 120534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1743C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1216C>T
  hgvsp: ENSP00000424369.1:p.Gln406Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1216C>T
  hgvsp: ENSP00000420323.1:p.Gln406Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.858C>T
  hgvsp: ENSP00000418862.2:p.Gln287Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.841C>T
  hgvsp: ENSP00000418177.2:p.Gln281Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.574C>T
  hgvsp: ENSP00000420796.1:p.Gln192Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1216C>T
  hgvsp: ENSP00000331157.7:p.Gln406Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.354C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1216C>T
  hgvsp: ENSP00000385450.2:p.Gln406Ter
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.466C>T
  hgvsp: ENSP00000418044.1:p.Gln156Ter
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6125
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln406Ter
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

3-65425609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425609
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425609
    reference: chr 3
allele count: 3
allele frequency: 2.488676521825693e-5
allele num: 120546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1215G>A
  hgvsp: ENST00000497477.2:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1215G>A
  hgvsp: ENST00000330909.8:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.573G>A
  hgvsp: ENST00000472257.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.353G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.857G>A
  hgvsp: ENST00000460329.2:c.857G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.840G>A
  hgvsp: ENST00000463103.2:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1215G>A
  hgvsp: ENST00000402939.2:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.465G>A
  hgvsp: ENST00000479287.1:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1215G>A
  hgvsp: ENST00000483466.1:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1742G>A
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln405Gln
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

3-65425612-C-CTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425612
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425615
    reference: chr 3
allele count: 196
allele frequency: 1.619647313533971e-3
allele num: 121014
alternate allele: CTGT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.569_570insACA
  hgvsp: ENSP00000420796.1:p.Gln190dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1211_1212insACA
  hgvsp: ENSP00000420323.1:p.Gln404dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.461_462insACA
  hgvsp: ENSP00000418044.1:p.Gln154dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1211_1212insACA
  hgvsp: ENSP00000331157.7:p.Gln404dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.836_837insACA
  hgvsp: ENSP00000418177.2:p.Gln279dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.853_854insACA
  hgvsp: ENSP00000418862.2:p.Gln285dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1211_1212insACA
  hgvsp: ENSP00000424369.1:p.Gln404dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1738_1739insACA
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1211_1212insACA
  hgvsp: ENSP00000385450.2:p.Gln404dup
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.349_350insACA
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 5.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 5.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 5
hgvs: p.Gln404dup
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

3-65425614-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425614
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425613
    reference: chr 3
allele count: 1
allele frequency: 8.257365570088519e-6
allele num: 121104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.851delG
  hgvsp: ENSP00000418862.2:p.Gln284HisfsTer64
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.834delG
  hgvsp: ENSP00000418177.2:p.Gln278HisfsTer64
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1209delG
  hgvsp: ENSP00000331157.7:p.Gln403HisfsTer64
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.459delG
  hgvsp: ENSP00000418044.1:p.Gln153HisfsTer?
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1209delG
  hgvsp: ENSP00000420323.1:p.Gln403HisfsTer64
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1209delG
  hgvsp: ENSP00000385450.2:p.Gln403HisfsTer64
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.567delG
  hgvsp: ENSP00000420796.1:p.Gln189HisfsTer64
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1209delG
  hgvsp: ENSP00000424369.1:p.Gln403HisfsTer64
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1736delG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.347delG
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6928
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln403HisfsTer64
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: GC
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

3-65425615-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425615
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425615
    reference: chr 3
allele count: 4
allele frequency: 3.302618976848641e-5
allele num: 121116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1736G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1209G>A
  hgvsp: ENST00000402939.2:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1209G>A
  hgvsp: ENST00000497477.2:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.459G>A
  hgvsp: ENST00000479287.1:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.567G>A
  hgvsp: ENST00000472257.1:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.347G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1209G>A
  hgvsp: ENST00000330909.8:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1209G>A
  hgvsp: ENST00000483466.1:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.834G>A
  hgvsp: ENST00000463103.2:c.834G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.851G>A
  hgvsp: ENST00000460329.2:c.851G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln403Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

3-65425616-TGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425616
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425614
    reference: chr 3
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.456_457delGC
  hgvsp: ENSP00000418044.1:p.Gln153AlafsTer?
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1206_1207delGC
  hgvsp: ENSP00000385450.2:p.Gln403AlafsTer62
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1733_1734delGC
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.564_565delGC
  hgvsp: ENSP00000420796.1:p.Gln189AlafsTer62
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.831_832delGC
  hgvsp: ENSP00000418177.2:p.Gln278AlafsTer62
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1206_1207delGC
  hgvsp: ENSP00000420323.1:p.Gln403AlafsTer62
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1206_1207delGC
  hgvsp: ENSP00000424369.1:p.Gln403AlafsTer62
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1206_1207delGC
  hgvsp: ENSP00000331157.7:p.Gln403AlafsTer62
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.848_849delGC
  hgvsp: ENSP00000418862.2:p.Gln284AlafsTer62
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.344_345delGC
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln403AlafsTer62
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TGC
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

3-65425618-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425618
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425618
    reference: chr 3
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1206G>A
  hgvsp: ENST00000402939.2:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1733G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.564G>A
  hgvsp: ENST00000472257.1:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.456G>A
  hgvsp: ENST00000479287.1:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1206G>A
  hgvsp: ENST00000483466.1:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1206G>A
  hgvsp: ENST00000497477.2:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.831G>A
  hgvsp: ENST00000463103.2:c.831G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.344G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.848G>A
  hgvsp: ENST00000460329.2:c.848G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1206G>A
  hgvsp: ENST00000330909.8:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38693
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln402Gln
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

3-65425621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425621
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425621
    reference: chr 3
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1203G>A
  hgvsp: ENST00000497477.2:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.561G>A
  hgvsp: ENST00000472257.1:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1203G>A
  hgvsp: ENST00000330909.8:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.453G>A
  hgvsp: ENST00000479287.1:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.828G>A
  hgvsp: ENST00000463103.2:c.828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1730G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.845G>A
  hgvsp: ENST00000460329.2:c.845G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1203G>A
  hgvsp: ENST00000483466.1:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1203G>A
  hgvsp: ENST00000402939.2:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.341G>A
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38696
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu401Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

3-65425622-TCAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425622
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425619
    reference: chr 3
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1199_1201delTTG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.449_451delTTG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.337_339delTTG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1199_1201delTTG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1199_1201delTTG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.841_843delTTG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1726_1728delTTG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1199_1201delTTG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.557_559delTTG
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.824_826delTTG
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu400_Glu401delinsGln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: TCAA
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

3-65425627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425627
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425627
    reference: chr 3
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.555G>A
  hgvsp: ENST00000472257.1:c.555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.839G>A
  hgvsp: ENST00000460329.2:c.839G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.335G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1197G>A
  hgvsp: ENST00000402939.2:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1197G>A
  hgvsp: ENST00000497477.2:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.822G>A
  hgvsp: ENST00000463103.2:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1197G>A
  hgvsp: ENST00000483466.1:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1197G>A
  hgvsp: ENST00000330909.8:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.447G>A
  hgvsp: ENST00000479287.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1724G>A
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln399Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

3-65425636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425636
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425636
    reference: chr 3
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1188G>A
  hgvsp: ENST00000497477.2:c.1188G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1188G>A
  hgvsp: ENST00000483466.1:c.1188G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1715G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.438G>A
  hgvsp: ENST00000479287.1:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1188G>A
  hgvsp: ENST00000402939.2:c.1188G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.830G>A
  hgvsp: ENST00000460329.2:c.830G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.813G>A
  hgvsp: ENST00000463103.2:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.546G>A
  hgvsp: ENST00000472257.1:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1188G>A
  hgvsp: ENST00000330909.8:c.1188G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.326G>A
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg396Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

3-65425638-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425638
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425638
    reference: chr 3
allele count: 2
allele frequency: 1.64883180266781e-5
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1713C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1186C>T
  hgvsp: ENSP00000385450.2:p.Arg396Trp
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1186C>T
  hgvsp: ENSP00000424369.1:p.Arg396Trp
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.811C>T
  hgvsp: ENSP00000418177.2:p.Arg271Trp
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.324C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1186C>T
  hgvsp: ENSP00000420323.1:p.Arg396Trp
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.544C>T
  hgvsp: ENSP00000420796.1:p.Arg182Trp
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.828C>T
  hgvsp: ENSP00000418862.2:p.Arg277Trp
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1186C>T
  hgvsp: ENSP00000331157.7:p.Arg396Trp
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.436C>T
  hgvsp: ENSP00000418044.1:p.Arg146Trp
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg396Trp
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

3-65425643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425643
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425643
    reference: chr 3
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1181C>T
  hgvsp: ENSP00000424369.1:p.Ala394Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.431C>T
  hgvsp: ENSP00000418044.1:p.Ala144Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.539C>T
  hgvsp: ENSP00000420796.1:p.Ala180Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1181C>T
  hgvsp: ENSP00000420323.1:p.Ala394Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.319C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.823C>T
  hgvsp: ENSP00000418862.2:p.Ala275Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.806C>T
  hgvsp: ENSP00000418177.2:p.Ala269Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1708C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1181C>T
  hgvsp: ENSP00000385450.2:p.Ala394Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1181C>T
  hgvsp: ENSP00000331157.7:p.Ala394Val
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala394Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

3-65425653-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425653
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425653
    reference: chr 3
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.421G>A
  hgvsp: ENSP00000418044.1:p.Val141Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.813G>A
  hgvsp: ENSP00000418862.2:p.Val272Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.796G>A
  hgvsp: ENSP00000418177.2:p.Val266Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1171G>A
  hgvsp: ENSP00000331157.7:p.Val391Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1171G>A
  hgvsp: ENSP00000424369.1:p.Val391Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.529G>A
  hgvsp: ENSP00000420796.1:p.Val177Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1698G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1171G>A
  hgvsp: ENSP00000385450.2:p.Val391Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.309G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1171G>A
  hgvsp: ENSP00000420323.1:p.Val391Ile
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val391Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

3-65425657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425657
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425657
    reference: chr 3
allele count: 3
allele frequency: 2.472921509471289e-5
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1167C>T
  hgvsp: ENST00000402939.2:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1167C>T
  hgvsp: ENST00000497477.2:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1167C>T
  hgvsp: ENST00000483466.1:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1167C>T
  hgvsp: ENST00000330909.8:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.417C>T
  hgvsp: ENST00000479287.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.525C>T
  hgvsp: ENST00000472257.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.809C>T
  hgvsp: ENST00000460329.2:c.809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.792C>T
  hgvsp: ENST00000463103.2:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.305C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1694C>T
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn389Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

3-65425670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425670
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425670
    reference: chr 3
allele count: 3
allele frequency: 2.473043822336532e-5
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1154C>T
  hgvsp: ENSP00000420323.1:p.Thr385Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1154C>T
  hgvsp: ENSP00000424369.1:p.Thr385Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1154C>T
  hgvsp: ENSP00000385450.2:p.Thr385Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.796C>T
  hgvsp: ENSP00000418862.2:p.Thr266Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1154C>T
  hgvsp: ENSP00000331157.7:p.Thr385Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.779C>T
  hgvsp: ENSP00000418177.2:p.Thr260Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.292C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1681C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.404C>T
  hgvsp: ENSP00000418044.1:p.Thr135Ile
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.512C>T
  hgvsp: ENSP00000420796.1:p.Thr171Ile
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6960
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr385Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

3-65425672-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425672
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425672
    reference: chr 3
allele count: 2
allele frequency: 1.648750247312537e-5
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.402G>C
  hgvsp: ENSP00000418044.1:p.Lys134Asn
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.510G>C
  hgvsp: ENSP00000420796.1:p.Lys170Asn
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.794G>C
  hgvsp: ENSP00000418862.2:p.Lys265Asn
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.290G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1152G>C
  hgvsp: ENSP00000385450.2:p.Lys384Asn
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1152G>C
  hgvsp: ENSP00000424369.1:p.Lys384Asn
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1152G>C
  hgvsp: ENSP00000420323.1:p.Lys384Asn
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1152G>C
  hgvsp: ENSP00000331157.7:p.Lys384Asn
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.777G>C
  hgvsp: ENSP00000418177.2:p.Lys259Asn
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1679G>C
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys384Asn
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

3-65425673-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425673
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425673
    reference: chr 3
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.401A>G
  hgvsp: ENSP00000418044.1:p.Lys134Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1151A>G
  hgvsp: ENSP00000420323.1:p.Lys384Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1678A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1151A>G
  hgvsp: ENSP00000385450.2:p.Lys384Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.776A>G
  hgvsp: ENSP00000418177.2:p.Lys259Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1151A>G
  hgvsp: ENSP00000331157.7:p.Lys384Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.289A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.509A>G
  hgvsp: ENSP00000420796.1:p.Lys170Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1151A>G
  hgvsp: ENSP00000424369.1:p.Lys384Arg
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.793A>G
  hgvsp: ENSP00000418862.2:p.Lys265Arg
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys384Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

3-65425683-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425683
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425683
    reference: chr 3
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1141A>G
  hgvsp: ENSP00000424369.1:p.Ile381Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.279A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.499A>G
  hgvsp: ENSP00000420796.1:p.Ile167Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1141A>G
  hgvsp: ENSP00000385450.2:p.Ile381Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.766A>G
  hgvsp: ENSP00000418177.2:p.Ile256Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.391A>G
  hgvsp: ENSP00000418044.1:p.Ile131Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1141A>G
  hgvsp: ENSP00000420323.1:p.Ile381Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1141A>G
  hgvsp: ENSP00000331157.7:p.Ile381Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.783A>G
  hgvsp: ENSP00000418862.2:p.Ile262Val
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1668A>G
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile381Val
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-65425691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425691
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425691
    reference: chr 3
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-4C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-4C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-4C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-4C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-4C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-4C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-4C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-4C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-4C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-4C>T
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1137-4C>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

3-65425694-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425694
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425694
    reference: chr 3
allele count: 281
allele frequency: 2.372749687573884e-3
allele num: 118428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-7T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-7T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-7T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-7T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-7T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-7T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-7T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-7T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-7T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-7T>C
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 9.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 2.5e0
  variant carriers: 12
hgvs: c.1137-7T>C
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

3-65425697-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425697
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425697
    reference: chr 3
allele count: 2
allele frequency: 1.650846058605035e-5
allele num: 121150
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-10T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-10T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-10T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-10T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-10T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-10T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-10T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-10T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-10T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-10T>C
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40373
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

3-65425705-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425705
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425705
    reference: chr 3
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-18A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-18A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-18A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-18A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-18A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-18A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-18A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-18A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-18A>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-18A>G
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6996
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

3-65425712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425712
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425712
    reference: chr 3
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-25G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-25G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-25G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-25G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-25G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-25G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-25G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-25G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-25G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-25G>A
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

3-65425714-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425714
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425714
    reference: chr 3
allele count: 2
allele frequency: 1.653138483410755e-5
allele num: 120982
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-27C>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-27C>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-27C>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-27C>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-27C>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-27C>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-27C>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-27C>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-27C>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-27C>A
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40363
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

3-65425718-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425718
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425718
    reference: chr 3
allele count: 1
allele frequency: 8.268152729317216e-6
allele num: 120946
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-31C>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-31C>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-31C>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-31C>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-31C>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-31C>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-31C>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-31C>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-31C>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-31C>G
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

3-65425719-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425719
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425719
    reference: chr 3
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-32T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-32T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-32T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-32T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-32T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-32T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-32T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-32T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-32T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-32T>C
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40359
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

3-65425720-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425720
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425720
    reference: chr 3
allele count: 2
allele frequency: 1.653521173338625e-5
allele num: 120954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-33T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-33T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-33T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-33T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-33T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-33T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-33T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-33T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-33T>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-33T>C
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

3-65425722-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425722
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425722
    reference: chr 3
allele count: 21
allele frequency: 1.736943971150188e-4
allele num: 120902
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-35G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-35G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-35G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-35G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-35G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-35G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-35G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-35G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-35G>C
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-35G>C
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5353
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-65425733-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425733
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425733
    reference: chr 3
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-46T>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-46T>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-46T>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-46T>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-46T>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-46T>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-46T>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-46T>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-46T>G
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-46T>G
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

3-65425735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425735
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425735
    reference: chr 3
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-48G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-48G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-48G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-48G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-48G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-48G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-48G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-48G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-48G>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-48G>A
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

3-65425737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425737
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425737
    reference: chr 3
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-50C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-50C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-50C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-50C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-50C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-50C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-50C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-50C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-50C>T
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-50C>T
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

3-65425739-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 65425739
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 65425739
    reference: chr 3
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000331157
  ensembl transcript: ENST00000330909
  gene symbol: MAGI1
  hgvsc: ENST00000330909.8:c.1137-52T>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000424369
  ensembl transcript: ENST00000497477
  gene symbol: MAGI1
  hgvsc: ENST00000497477.2:c.1137-52T>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420796
  ensembl transcript: ENST00000472257
  gene symbol: MAGI1
  hgvsc: ENST00000472257.1:c.495-52T>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000385450
  ensembl transcript: ENST00000402939
  gene symbol: MAGI1
  hgvsc: ENST00000402939.2:c.1137-52T>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000470990
  gene symbol: MAGI1
  hgvsc: ENST00000470990.1:n.1664-52T>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl transcript: ENST00000494271
  gene symbol: MAGI1
  hgvsc: ENST00000494271.1:n.275-52T>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418862
  ensembl transcript: ENST00000460329
  gene symbol: MAGI1
  hgvsc: ENST00000460329.2:c.779-52T>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418044
  ensembl transcript: ENST00000479287
  gene symbol: MAGI1
  hgvsc: ENST00000479287.1:c.387-52T>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000418177
  ensembl transcript: ENST00000463103
  gene symbol: MAGI1
  hgvsc: ENST00000463103.2:c.762-52T>A
  variant of: http://identifiers.org/hgnc/946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151276
  ensembl protein: ENSP00000420323
  ensembl transcript: ENST00000483466
  gene symbol: MAGI1
  hgvsc: ENST00000483466.1:c.1137-52T>A
  variant of: http://identifiers.org/hgnc/946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 671
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33870
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3964
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4343
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14086
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.560229445506692e-5
allele num: 10460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.43e-1

DP
type: SiteQuality
SIO_000300: 3.783026e6

MQRankSum
type: SiteQuality
SIO_000300: -2.771e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e-1

FS
type: SiteQuality
SIO_000300: 5.25e-1

MQ
type: SiteQuality
SIO_000300: 5.427e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.16e-2

QD
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.041e0

GenotypeQuality
all individuals: 156
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1941
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38297
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5542913985514e-5
allele num: 64338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.049538203190596e-4
allele num: 9528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.13e-1

DP
type: SiteQuality
SIO_000300: 3.478215e6

MQRankSum
type: SiteQuality
SIO_000300: -1.911e0

FS
type: SiteQuality
SIO_000300: 5.23e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.849e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

GenotypeQuality
all individuals: 38363
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6229
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.758101243650377e-5
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.014816318246397e-4
allele num: 9854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531205977828137e-5
allele num: 65308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
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DP
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FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: -9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.654e1

MQRankSum
type: SiteQuality
SIO_000300: -2.088e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531205977828137e-5
allele num: 65308
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

DP
type: SiteQuality
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VQSLOD
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SIO_000300: -1.385e0

FS
type: SiteQuality
SIO_000300: 1.767e0

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 5.0e-3

ReadPosRankSum
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SIO_000300: 2.56e0

MQRankSum
type: SiteQuality
SIO_000300: -2.088e0

MQ
type: SiteQuality
SIO_000300: 5.654e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.417e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
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SIO_000300: -2.35e-1

QD
type: SiteQuality
SIO_000300: 1.494e1

FS
type: SiteQuality
SIO_000300: 1.106e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 3.449068e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.005e0

VQSLOD
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SIO_000300: -1.112e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.43421e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: -8.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

QD
type: SiteQuality
SIO_000300: 2.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQ
type: SiteQuality
SIO_000300: 5.858e1

VQSLOD
type: SiteQuality
SIO_000300: -1.64e0

FS
type: SiteQuality
SIO_000300: 1.088e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

DP
type: SiteQuality
SIO_000300: 3.43421e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e0

VQSLOD
type: SiteQuality
SIO_000300: -1.64e0

ReadPosRankSum
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SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.858e1

FS
type: SiteQuality
SIO_000300: 1.088e1

QD
type: SiteQuality
SIO_000300: 2.41e0

MQRankSum
type: SiteQuality
SIO_000300: -8.21e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.509115054931788e-5
allele num: 66264
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.417347e6

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.912e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.28e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509115054931788e-5
allele num: 66264
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.800078400627205e-5
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.511670093118878e-5
allele num: 66152
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Latino
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allele frequency: 1.743679163034002e-4
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.895111814763506e-5
allele num: 10106
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MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.5e0
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 248

Latino
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allele count: 14
allele frequency: 1.216122307157748e-3
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 209
allele frequency: 2.035053554040896e-2
allele num: 10270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.411091018685955e-4
allele num: 66360
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.887392306758889e-4
allele num: 16482
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
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MQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.409989e6

QD
type: SiteQuality
SIO_000300: 2.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.033612425676495e-4
allele num: 16482
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.215e0

FS
type: SiteQuality
SIO_000300: 1.141e0

QD
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MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 3.409989e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506931886678722e-5
allele num: 66360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

FS
type: SiteQuality
SIO_000300: 1.141e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
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SIO_000300: 1.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 2.34e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1447
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013863773357444e-5
allele num: 66360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

QD
type: SiteQuality
SIO_000300: 2.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 3.409989e6

FS
type: SiteQuality
SIO_000300: 1.141e0

VQSLOD
type: SiteQuality
SIO_000300: -1.215e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 58
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737317581653926e-4
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: -1.215e0

QD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.141e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66382
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 20
allele frequency: 1.741856819369448e-3
allele num: 11482
num of homozygotes: 1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.998e1

MQRankSum
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DP
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QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 160

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 7.077856420626896e-4
allele num: 9890
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European (Non-Finnish)
type: Population
allele count: 178
allele frequency: 2.688090851430125e-3
allele num: 66218
num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 4.567600487210718e-4
allele num: 6568
num of homozygotes: 0

South Asian
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allele count: 38
allele frequency: 2.306105109843427e-3
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
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Other
type: Population
allele count: 1
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MQRankSum
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ClippingRankSum
type: SiteQuality
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FS
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QD
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DP
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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East Asian
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.523972080831479e-5
allele num: 65618
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37988
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1886
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.052123948286476e-4
allele num: 9746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.3e-1

MQ
type: SiteQuality
SIO_000300: 5.802e1

FS
type: SiteQuality
SIO_000300: 2.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.902e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.102e0

DP
type: SiteQuality
SIO_000300: 3.353063e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

GenotypeQuality
all individuals: 1372
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.289237531286246e-4
allele num: 65524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 1.045e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 9.952e0

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 3.352896e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.186e0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1481
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variant carriers: 0

GenotypeQuality
all individuals: 3215
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.672897196261682e-4
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.017915309446254e-4
allele num: 9824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 2.22e0

FS
type: SiteQuality
SIO_000300: 1.101e0

VQSLOD
type: SiteQuality
SIO_000300: -2.045e0

MQ
type: SiteQuality
SIO_000300: 6.195e1

DP
type: SiteQuality
SIO_000300: 3.355779e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e-1

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7569
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 166
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variant carriers: 0

GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 518
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variant carriers: 1

GenotypeQuality
all individuals: 1854
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1328
bin: 8.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37187
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1389
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.128421711246676e-5
allele num: 63930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.813894431344096e-4
allele num: 11026
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.636363636363636e-4
allele num: 8250
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.207324643078833e-5
allele num: 16110
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.204585537918871e-4
allele num: 9072
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.425e0

QD
type: SiteQuality
SIO_000300: 3.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

DP
type: SiteQuality
SIO_000300: 3.360503e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

MQ
type: SiteQuality
SIO_000300: 5.812e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

GenotypeQuality
all individuals: 2167
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.75e1
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GenotypeQuality
all individuals: 1328
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
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variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 3.25e1
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GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 7569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
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GenotypeQuality
all individuals: 1389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37187
bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11026
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.484848484848485e-4
allele num: 8250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63930
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

QD
type: SiteQuality
SIO_000300: 3.46e0

MQ
type: SiteQuality
SIO_000300: 5.812e1

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

DP
type: SiteQuality
SIO_000300: 3.360503e6

FS
type: SiteQuality
SIO_000300: 2.425e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

GenotypeQuality
all individuals: 2945
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.75e1
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GenotypeQuality
all individuals: 1857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
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GenotypeQuality
all individuals: 518
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variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 37187
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 172
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variant carriers: 0

GenotypeQuality
all individuals: 7569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.103662321539416e-4
allele num: 16110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.360503e6

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

MQ
type: SiteQuality
SIO_000300: 5.812e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

QD
type: SiteQuality
SIO_000300: 3.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

FS
type: SiteQuality
SIO_000300: 2.425e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

GenotypeQuality
all individuals: 1857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37187
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 3.25e1
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GenotypeQuality
all individuals: 518
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 1328
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variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.75e1
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GenotypeQuality
all individuals: 1389
bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 117
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GenotypeQuality
all individuals: 1854
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63930
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.069472156720479e-5
allele num: 11026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.812e1

DP
type: SiteQuality
SIO_000300: 3.360503e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 3.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

FS
type: SiteQuality
SIO_000300: 2.425e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

GenotypeQuality
all individuals: 152
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 2.5e0
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GenotypeQuality
all individuals: 38313
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GenotypeQuality
all individuals: 71
bin: 4.75e1
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 1519
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variant carriers: 0

GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 81
bin: 7.5e0
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GenotypeQuality
all individuals: 501
bin: 2.25e1
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GenotypeQuality
all individuals: 156
bin: 2.75e1
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GenotypeQuality
all individuals: 1417
bin: 8.75e1
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GenotypeQuality
all individuals: 2302
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GenotypeQuality
all individuals: 1998
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
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GenotypeQuality
all individuals: 7893
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.838607035531201e-5
allele num: 11314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.0441400304414e-5
allele num: 65700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: -4.062e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.599e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.786e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.73e-1

FS
type: SiteQuality
SIO_000300: 2.196e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.542e0

DP
type: SiteQuality
SIO_000300: 3.392043e6

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 247
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38944
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 7.5e0
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GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7373
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.649e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

DP
type: SiteQuality
SIO_000300: 3.387689e6

VQSLOD
type: SiteQuality
SIO_000300: -9.159e-1

QD
type: SiteQuality
SIO_000300: 3.031e1

MQ
type: SiteQuality
SIO_000300: 5.552e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.249e0

GenotypeQuality
all individuals: 7495
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
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variant carriers: 0

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38729
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 230
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.881422924901186e-5
allele num: 10120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.188e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.699e0

MQRankSum
type: SiteQuality
SIO_000300: 9.21e-1

DP
type: SiteQuality
SIO_000300: 3.388686e6

FS
type: SiteQuality
SIO_000300: 1.493e0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
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GenotypeQuality
all individuals: 38776
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 202
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variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

MQ
type: SiteQuality
SIO_000300: 6.103e1

VQSLOD
type: SiteQuality
SIO_000300: -5.083e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.18e-2

DP
type: SiteQuality
SIO_000300: 3.39251e6

FS
type: SiteQuality
SIO_000300: 1.729e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

QD
type: SiteQuality
SIO_000300: 1.72e1

GenotypeQuality
all individuals: 37986
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.837559720690923e-4
allele num: 16326
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.76522506619594e-4
allele num: 11330
num of homozygotes: 0

East Asian
type: Population
allele count: 19
allele frequency: 2.235294117647059e-3
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.016051364365971e-4
allele num: 9968
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

FS
type: SiteQuality
SIO_000300: 1.934e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 3.385361e6

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 736
bin: 2.5e0
variant carriers: 6

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1526
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 532
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2296
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8031
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 37986
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1985
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.523461304082876e-4
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.352941176470588e-4
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.214734732302833e-4
allele num: 65858
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.737718975866715e-4
allele num: 16326
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

DP
type: SiteQuality
SIO_000300: 3.385361e6

FS
type: SiteQuality
SIO_000300: 1.934e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3137
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 1526
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variant carriers: 0

GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 219
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 736
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.212389380530973e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.036836830757083e-5
allele num: 65858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.934e0

QD
type: SiteQuality
SIO_000300: 6.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 3.385361e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1526
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 2.25e1
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GenotypeQuality
all individuals: 37986
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 736
bin: 2.5e0
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GenotypeQuality
all individuals: 8031
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 219
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variant carriers: 0

GenotypeQuality
all individuals: 3137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.046922608165753e-4
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.003210272873194e-4
allele num: 9968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.884994989219229e-4
allele num: 65858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.125199068969742e-5
allele num: 16326
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

FS
type: SiteQuality
SIO_000300: 1.934e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

DP
type: SiteQuality
SIO_000300: 3.385361e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

QD
type: SiteQuality
SIO_000300: 6.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.385361e6

FS
type: SiteQuality
SIO_000300: 1.934e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 1537
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 442
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 7798
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GenotypeQuality
all individuals: 38215
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GenotypeQuality
all individuals: 1436
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GenotypeQuality
all individuals: 190
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.344116268166901e-4
allele num: 8532
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.066422912858013e-4
allele num: 65640
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: 2.0e-3

VQSLOD
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ClippingRankSum
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SIO_000300: -2.6e-1

BaseQRankSum
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MQ
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SIO_000300: 5.889e1

FS
type: SiteQuality
SIO_000300: 1.792e0

QD
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ReadPosRankSum
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SIO_000300: -4.86e-1

DP
type: SiteQuality
SIO_000300: 3.335651e6

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.51285930408472e-5
allele num: 66100
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQ
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SIO_000300: 5.963e1

ReadPosRankSum
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QD
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VQSLOD
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.383e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.931993817619784e-4
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66132
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.724e0

MQRankSum
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SIO_000300: 7.43e-1

ClippingRankSum
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MQ
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SIO_000300: 5.456e1

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 3.355226e6

BaseQRankSum
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SIO_000300: 8.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.936858415649816e-4
allele num: 10326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
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South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 1.473e1

VQSLOD
type: SiteQuality
SIO_000300: -6.63e-2

MQ
type: SiteQuality
SIO_000300: 5.633e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.854e0

FS
type: SiteQuality
SIO_000300: 1.968e0

BaseQRankSum
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SIO_000300: -2.222e0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.48e-1

DP
type: SiteQuality
SIO_000300: 3.353486e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 128

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 18
allele frequency: 1.091835496785151e-3
allele num: 16486
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.889616644191871e-4
allele num: 10382
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
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European (Non-Finnish)
type: Population
allele count: 171
allele frequency: 2.571041948579161e-3
allele num: 66510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.036744609778318e-4
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.48e-1

BaseQRankSum
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MQ
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SIO_000300: 5.838e1

InbreedingCoeff
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SIO_000300: 4.0e-4

MQRankSum
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FS
type: SiteQuality
SIO_000300: 6.870000000000001e-1

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 3.03e0

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
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Other
type: Population
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allele frequency: 0.0e0
allele num: 906
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.395e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 3.84e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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num of homozygotes: 0

East Asian
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allele frequency: 3.480278422273782e-4
allele num: 8620
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66598
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African
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allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11524
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South Asian
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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DP
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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East Asian
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 3.347073e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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Latino
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Other
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European (Finnish)
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MQ
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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Other
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Latino
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South Asian
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MQ
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BaseQRankSum
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FS
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MQRankSum
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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East Asian
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African
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Latino
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European (Non-Finnish)
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MQ
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QD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Other
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Latino
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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FS
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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SIO_000300: -5.504e0

DP
type: SiteQuality
SIO_000300: 3.346686e6

VQSLOD
type: SiteQuality
SIO_000300: -3.175e0

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

ClippingRankSum
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SIO_000300: -5.28e-1

DP
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SIO_000300: 3.34674e6

MQRankSum
type: SiteQuality
SIO_000300: -1.086e0

InbreedingCoeff
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SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.77e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.497211728728189e-5
allele num: 66708
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 8.78e-1

DP
type: SiteQuality
SIO_000300: 3.346486e6

QD
type: SiteQuality
SIO_000300: 1.122e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.629e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.679e0

FS
type: SiteQuality
SIO_000300: 2.273e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998320940273447e-5
allele num: 66704
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.159999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 3.346293e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.391e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.58e-2

QD
type: SiteQuality
SIO_000300: 1.709e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.263e0

DP
type: SiteQuality
SIO_000300: 3.346102e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.337e0

VQSLOD
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MQ
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SIO_000300: 5.726e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.345539e6

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.897e1

GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

Other
type: Population
allele count: 6
allele frequency: 6.928406466512702e-3
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.634750116767865e-3
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.496503496503497e-4
allele num: 11440
num of homozygotes: 0

European (Finnish)
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allele count: 66
allele frequency: 1.119402985074627e-2
allele num: 5896
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213592233009709e-4
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.977963073257892e-3
allele num: 10074
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European (Non-Finnish)
type: Population
allele count: 159
allele frequency: 2.442096209375192e-3
allele num: 65108
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.688e0

FS
type: SiteQuality
SIO_000300: 3.18627e2

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.72e1

MQRankSum
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SIO_000300: 1.84e0

VQSLOD
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SIO_000300: -4.814e2

DP
type: SiteQuality
SIO_000300: 3.447203e6

ClippingRankSum
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SIO_000300: 5.23e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7238
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
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Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

African
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.112e0

QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.991e1

BaseQRankSum
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SIO_000300: 4.78e0

VQSLOD
type: SiteQuality
SIO_000300: 6.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 3.401842e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -5.94e-1

QD
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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SIO_000300: 5.809e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 4.34e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.939e0

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -1.176e0

ClippingRankSum
type: SiteQuality
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MQRankSum
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QD
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VQSLOD
type: SiteQuality
SIO_000300: -6.509e-1

InbreedingCoeff
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SIO_000300: 9.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.382645e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.005349522149426e-5
allele num: 66548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

FS
type: SiteQuality
SIO_000300: 1.913e0

VQSLOD
type: SiteQuality
SIO_000300: -6.963e-1

DP
type: SiteQuality
SIO_000300: 3.381928e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.197e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.86e-1

DP
type: SiteQuality
SIO_000300: 3.376283e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

QD
type: SiteQuality
SIO_000300: 8.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.319109461966605e-4
allele num: 8624
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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East Asian
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African
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Other
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FS
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QD
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DP
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MQ
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
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allele num: 11508
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.504890895410083e-5
allele num: 66450
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African
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Other
type: Population
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.814e1

FS
type: SiteQuality
SIO_000300: 9.85e0

QD
type: SiteQuality
SIO_000300: 1.642e1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: -4.659e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e0

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40354
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.161429451632779e-5
allele num: 16230
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

DP
type: SiteQuality
SIO_000300: 3.356528e6

VQSLOD
type: SiteQuality
SIO_000300: -3.596e-1

FS
type: SiteQuality
SIO_000300: 7.136e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

QD
type: SiteQuality
SIO_000300: 9.84e0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4105
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40355
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2059
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2368
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66408
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

FS
type: SiteQuality
SIO_000300: 1.781e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.561e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

DP
type: SiteQuality
SIO_000300: 3.356055e6

GenotypeQuality
all individuals: 701
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 5.25e1
variant carriers: 0