1-111778318-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778318
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778318
    reference: chr 1
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.538T>C
  hgvsp: ENST00000486561.2:c.538T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.538T>C
  hgvsp: ENST00000369748.4:c.538T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.508T>C
  hgvsp: ENST00000369744.2:c.508T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.301T>C
  hgvsp: ENST00000497587.2:c.301T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.538T>C
  hgvsp: ENST00000528451.1:c.538T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.100T>C
  hgvsp: ENST00000497220.1:c.100T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.481T>C
  hgvsp: ENST00000474304.2:c.481T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.301T>C
  hgvsp: ENST00000524472.1:c.301T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.538T>C
  hgvsp: ENST00000445067.2:c.538T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.301T>C
  hgvsp: ENST00000477185.2:c.301T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-328T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.244T>C
  hgvsp: ENST00000467038.2:c.244T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.301T>C
  hgvsp: ENST00000466741.1:c.301T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu180Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

1-111778325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778325
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778325
    reference: chr 1
allele count: 12734
allele frequency: 1.050538716649892e-1
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.107C>T
  hgvsp: ENSP00000435250.1:p.Ala36Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-321C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.251C>T
  hgvsp: ENSP00000431978.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.545C>T
  hgvsp: ENSP00000437082.1:p.Ala182Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.308C>T
  hgvsp: ENSP00000436006.1:p.Ala103Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.545C>T
  hgvsp: ENSP00000431968.1:p.Ala182Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.545C>T
  hgvsp: ENSP00000436077.1:p.Ala182Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.308C>T
  hgvsp: ENSP00000432049.1:p.Ala103Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.545C>T
  hgvsp: ENSP00000358763.4:p.Ala182Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.308C>T
  hgvsp: ENSP00000437086.1:p.Ala103Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.515C>T
  hgvsp: ENSP00000358759.2:p.Ala172Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.488C>T
  hgvsp: ENSP00000436380.2:p.Ala163Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.308C>T
  hgvsp: ENSP00000436272.1:p.Ala103Val
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 7.75e1
  variant carriers: 958
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 3.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.75e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 5.25e1
  variant carriers: 617
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 9.25e1
  variant carriers: 678
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 7.25e1
  variant carriers: 934
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 6.25e1
  variant carriers: 845
genotype depth: GenotypeDepth
  all individuals: 6928
  bin: 9.75e1
  variant carriers: 3231
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 6.75e1
  variant carriers: 917
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 8.75e1
  variant carriers: 786
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 8.25e1
  variant carriers: 910
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 2.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
hgvs: p.Ala182Val
num of homozygotes: 775
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

1-111778326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778326
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778326
    reference: chr 1
allele count: 7
allele frequency: 5.776912157924273e-5
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.309G>A
  hgvsp: ENST00000466741.1:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-320G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.252G>A
  hgvsp: ENST00000467038.2:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.546G>A
  hgvsp: ENST00000528451.1:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.546G>A
  hgvsp: ENST00000445067.2:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.516G>A
  hgvsp: ENST00000369744.2:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.309G>A
  hgvsp: ENST00000497587.2:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.309G>A
  hgvsp: ENST00000524472.1:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.489G>A
  hgvsp: ENST00000474304.2:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.108G>A
  hgvsp: ENST00000497220.1:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.546G>A
  hgvsp: ENST00000486561.2:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.309G>A
  hgvsp: ENST00000477185.2:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.546G>A
  hgvsp: ENST00000369748.4:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala182Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

1-111778328-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778328
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778328
    reference: chr 1
allele count: 57
allele frequency: 4.704057042881194e-4
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.311G>A
  hgvsp: ENSP00000436272.1:p.Gly104Asp
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.110G>A
  hgvsp: ENSP00000435250.1:p.Gly37Asp
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.311G>A
  hgvsp: ENSP00000436006.1:p.Gly104Asp
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.491G>A
  hgvsp: ENSP00000436380.2:p.Gly164Asp
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.548G>A
  hgvsp: ENSP00000358763.4:p.Gly183Asp
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.518G>A
  hgvsp: ENSP00000358759.2:p.Gly173Asp
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.548G>A
  hgvsp: ENSP00000431968.1:p.Gly183Asp
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.254G>A
  hgvsp: ENSP00000431978.1:p.Gly85Asp
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.311G>A
  hgvsp: ENSP00000432049.1:p.Gly104Asp
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.548G>A
  hgvsp: ENSP00000436077.1:p.Gly183Asp
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-318G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.311G>A
  hgvsp: ENSP00000437086.1:p.Gly104Asp
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.548G>A
  hgvsp: ENSP00000437082.1:p.Gly183Asp
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly183Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

1-111778329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778329
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778329
    reference: chr 1
allele count: 12
allele frequency: 9.903768383870063e-5
allele num: 121166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.255C>T
  hgvsp: ENST00000467038.2:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.549C>T
  hgvsp: ENST00000528451.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.312C>T
  hgvsp: ENST00000466741.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.549C>T
  hgvsp: ENST00000369748.4:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.492C>T
  hgvsp: ENST00000474304.2:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.312C>T
  hgvsp: ENST00000497587.2:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.549C>T
  hgvsp: ENST00000486561.2:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.111C>T
  hgvsp: ENST00000497220.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.312C>T
  hgvsp: ENST00000524472.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.519C>T
  hgvsp: ENST00000369744.2:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-317C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.312C>T
  hgvsp: ENST00000477185.2:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.549C>T
  hgvsp: ENST00000445067.2:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly183Gly
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

1-111778330-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778330
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778330
    reference: chr 1
allele count: 295
allele frequency: 2.434957739038563e-3
allele num: 121152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.313G>A
  hgvsp: ENSP00000437086.1:p.Val105Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.550G>A
  hgvsp: ENSP00000437082.1:p.Val184Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.550G>A
  hgvsp: ENSP00000358763.4:p.Val184Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.313G>A
  hgvsp: ENSP00000436006.1:p.Val105Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.493G>A
  hgvsp: ENSP00000436380.2:p.Val165Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.313G>A
  hgvsp: ENSP00000436272.1:p.Val105Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.550G>A
  hgvsp: ENSP00000431968.1:p.Val184Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.550G>A
  hgvsp: ENSP00000436077.1:p.Val184Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.256G>A
  hgvsp: ENSP00000431978.1:p.Val86Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.520G>A
  hgvsp: ENSP00000358759.2:p.Val174Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.313G>A
  hgvsp: ENSP00000432049.1:p.Val105Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-316G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.112G>A
  hgvsp: ENSP00000435250.1:p.Val38Ile
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 7.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
hgvs: p.Val184Ile
num of homozygotes: 2
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

1-111778330-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778330
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778330
    reference: chr 1
allele count: 1
allele frequency: 8.254094030639197e-6
allele num: 121152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.550G>C
  hgvsp: ENSP00000436077.1:p.Val184Leu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.313G>C
  hgvsp: ENSP00000432049.1:p.Val105Leu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.313G>C
  hgvsp: ENSP00000436006.1:p.Val105Leu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.313G>C
  hgvsp: ENSP00000436272.1:p.Val105Leu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.256G>C
  hgvsp: ENSP00000431978.1:p.Val86Leu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.550G>C
  hgvsp: ENSP00000358763.4:p.Val184Leu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.550G>C
  hgvsp: ENSP00000437082.1:p.Val184Leu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.112G>C
  hgvsp: ENSP00000435250.1:p.Val38Leu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.550G>C
  hgvsp: ENSP00000431968.1:p.Val184Leu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.493G>C
  hgvsp: ENSP00000436380.2:p.Val165Leu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.520G>C
  hgvsp: ENSP00000358759.2:p.Val174Leu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-316G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.313G>C
  hgvsp: ENSP00000437086.1:p.Val105Leu
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val184Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

1-111778349-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778349
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778349
    reference: chr 1
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.332T>C
  hgvsp: ENSP00000437086.1:p.Met111Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.512T>C
  hgvsp: ENSP00000436380.2:p.Met171Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.569T>C
  hgvsp: ENSP00000436077.1:p.Met190Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.131T>C
  hgvsp: ENSP00000435250.1:p.Met44Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.332T>C
  hgvsp: ENSP00000436272.1:p.Met111Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.332T>C
  hgvsp: ENSP00000436006.1:p.Met111Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-297T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.275T>C
  hgvsp: ENSP00000431978.1:p.Met92Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.569T>C
  hgvsp: ENSP00000437082.1:p.Met190Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.569T>C
  hgvsp: ENSP00000431968.1:p.Met190Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.569T>C
  hgvsp: ENSP00000358763.4:p.Met190Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.539T>C
  hgvsp: ENSP00000358759.2:p.Met180Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.332T>C
  hgvsp: ENSP00000432049.1:p.Met111Thr
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met190Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

1-111778350-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778350
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778350
    reference: chr 1
allele count: 1
allele frequency: 8.263097008758882e-6
allele num: 121020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.333G>A
  hgvsp: ENSP00000432049.1:p.Met111Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.276G>A
  hgvsp: ENSP00000431978.1:p.Met92Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.570G>A
  hgvsp: ENSP00000436077.1:p.Met190Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.540G>A
  hgvsp: ENSP00000358759.2:p.Met180Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.570G>A
  hgvsp: ENSP00000358763.4:p.Met190Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-296G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.570G>A
  hgvsp: ENSP00000437082.1:p.Met190Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.132G>A
  hgvsp: ENSP00000435250.1:p.Met44Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.333G>A
  hgvsp: ENSP00000437086.1:p.Met111Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.513G>A
  hgvsp: ENSP00000436380.2:p.Met171Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.570G>A
  hgvsp: ENSP00000431968.1:p.Met190Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.333G>A
  hgvsp: ENSP00000436006.1:p.Met111Ile
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.333G>A
  hgvsp: ENSP00000436272.1:p.Met111Ile
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met190Ile
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ

1-111778356-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778356
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778356
    reference: chr 1
allele count: 2
allele frequency: 1.653439153439154e-5
allele num: 120960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.339T>A
  hgvsp: ENSP00000432049.1:p.Asp113Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.282T>A
  hgvsp: ENSP00000431978.1:p.Asp94Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.546T>A
  hgvsp: ENSP00000358759.2:p.Asp182Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.138T>A
  hgvsp: ENSP00000435250.1:p.Asp46Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.519T>A
  hgvsp: ENSP00000436380.2:p.Asp173Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.576T>A
  hgvsp: ENSP00000436077.1:p.Asp192Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.576T>A
  hgvsp: ENSP00000437082.1:p.Asp192Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.339T>A
  hgvsp: ENSP00000436006.1:p.Asp113Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.576T>A
  hgvsp: ENSP00000431968.1:p.Asp192Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.339T>A
  hgvsp: ENSP00000436272.1:p.Asp113Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.339T>A
  hgvsp: ENSP00000437086.1:p.Asp113Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-290T>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.576T>A
  hgvsp: ENSP00000358763.4:p.Asp192Glu
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp192Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

1-111778381-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778381
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778381
    reference: chr 1
allele count: 1
allele frequency: 8.308822307526131e-6
allele num: 120354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.571G>A
  hgvsp: ENSP00000358759.2:p.Ala191Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.601G>A
  hgvsp: ENSP00000358763.4:p.Ala201Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.544G>A
  hgvsp: ENSP00000436380.2:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.163G>A
  hgvsp: ENSP00000435250.1:p.Ala55Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.364G>A
  hgvsp: ENSP00000436272.1:p.Ala122Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.601G>A
  hgvsp: ENSP00000431968.1:p.Ala201Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.601G>A
  hgvsp: ENSP00000436077.1:p.Ala201Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.364G>A
  hgvsp: ENSP00000432049.1:p.Ala122Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.601G>A
  hgvsp: ENSP00000437082.1:p.Ala201Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.364G>A
  hgvsp: ENSP00000437086.1:p.Ala122Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.307G>A
  hgvsp: ENSP00000431978.1:p.Ala103Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-265G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.364G>A
  hgvsp: ENSP00000436006.1:p.Ala122Thr
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala201Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

1-111778383-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778383
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778383
    reference: chr 1
allele count: 2
allele frequency: 1.662123529020677e-5
allele num: 120328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-263A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.603A>G
  hgvsp: ENST00000369748.4:c.603A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.603A>G
  hgvsp: ENST00000445067.2:c.603A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.366A>G
  hgvsp: ENST00000466741.1:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.366A>G
  hgvsp: ENST00000524472.1:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.546A>G
  hgvsp: ENST00000474304.2:c.546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.366A>G
  hgvsp: ENST00000497587.2:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.309A>G
  hgvsp: ENST00000467038.2:c.309A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.165A>G
  hgvsp: ENST00000497220.1:c.165A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.603A>G
  hgvsp: ENST00000528451.1:c.603A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.573A>G
  hgvsp: ENST00000369744.2:c.573A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.366A>G
  hgvsp: ENST00000477185.2:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.603A>G
  hgvsp: ENST00000486561.2:c.603A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.603A>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/1-111778385-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778385
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778385
    reference: chr 1
allele count: 1
allele frequency: 8.314210648840998e-6
allele num: 120276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-261A>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.368A>C
  hgvsp: ENSP00000436272.1:p.Lys123Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.368A>C
  hgvsp: ENSP00000432049.1:p.Lys123Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.368A>C
  hgvsp: ENSP00000437086.1:p.Lys123Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436006
  ensembl transcript: ENST00000497587
  gene symbol: CHI3L2
  hgvsc: ENST00000497587.2:c.368A>C
  hgvsp: ENST00000497587.2:c.368A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.605A>C
  hgvsp: ENSP00000358763.4:p.Lys202Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.167A>C
  hgvsp: ENSP00000435250.1:p.Lys56Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.605A>C
  hgvsp: ENSP00000436077.1:p.Lys202Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431968
  ensembl transcript: ENST00000486561
  gene symbol: CHI3L2
  hgvsc: ENST00000486561.2:c.605A>C
  hgvsp: ENST00000486561.2:c.605A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.311A>C
  hgvsp: ENSP00000431978.1:p.Lys104Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.605A>C
  hgvsp: ENSP00000437082.1:p.Lys202Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.575A>C
  hgvsp: ENSP00000358759.2:p.Lys192Thr
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436380
  ensembl transcript: ENST00000474304
  gene symbol: CHI3L2
  hgvsc: ENST00000474304.2:c.548A>C
  hgvsp: ENST00000474304.2:c.548A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys202Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-111778398-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778398
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778398
    reference: chr 1
allele count: 1
allele frequency: 8.342092530490349e-6
allele num: 119874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.605+13G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-248G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.311+13G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.605+13G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.368+13G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.575+13G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.368+13G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.605+13G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.368+13G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.167+13G>A
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP

1-111778401-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778401
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778401
    reference: chr 1
allele count: 5
allele frequency: 4.176760504552669e-5
allele num: 119710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.368+16C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.167+16C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.311+16C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-245C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.368+16C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.368+16C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.605+16C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.605+16C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.605+16C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.575+16C>G
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

1-111778402-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778402
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778402
    reference: chr 1
allele count: 1
allele frequency: 8.347663488989432e-6
allele num: 119794
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.368+17A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.167+17A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-244A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.605+17A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.368+17A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.575+17A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.605+17A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.368+17A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.605+17A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.311+17A>G
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

1-111778407-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778407
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778407
    reference: chr 1
allele count: 2
allele frequency: 1.671569938486226e-5
allele num: 119648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.167+22T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.368+22T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.605+22T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.605+22T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.368+22T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.605+22T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.368+22T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.575+22T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-239T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.311+22T>G
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

1-111778419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778419
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778419
    reference: chr 1
allele count: 128
allele frequency: 1.07458275966285e-3
allele num: 119116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.368+34C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.605+34C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.575+34C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.605+34C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.368+34C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.167+34C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.368+34C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-227C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.311+34C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.605+34C>T
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 2
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-111778423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778423
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778423
    reference: chr 1
allele count: 3
allele frequency: 2.521093145988101e-5
allele num: 118996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.167+38C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.368+38C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.605+38C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.368+38C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.311+38C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-223C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.605+38C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.575+38C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.605+38C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.368+38C>T
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

1-111778432-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778432
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778432
    reference: chr 1
allele count: 11
allele frequency: 9.267528265961211e-5
allele num: 118694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.368+47C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.368+47C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.605+47C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.575+47C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.605+47C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.167+47C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.605+47C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.368+47C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-214C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.311+47C>G
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

1-111778602-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778602
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778602
    reference: chr 1
allele count: 2
allele frequency: 1.673836265336525e-5
allele num: 119486
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-44C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-44C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-44C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-44C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-44C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-44C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-44C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-44C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-44C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-44C>G
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum

1-111778605-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778605
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778605
    reference: chr 1
allele count: 1
allele frequency: 8.352962795903706e-6
allele num: 119718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-41T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-41T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-41T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-41T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-41T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-41T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-41T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-41T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-41T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-41T>C
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-111778605-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778605
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778605
    reference: chr 1
allele count: 1
allele frequency: 8.352962795903706e-6
allele num: 119718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-41T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-41T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-41T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-41T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-41T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-41T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-41T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-41T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-41T>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-41T>G
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3814
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-111778607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778607
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778607
    reference: chr 1
allele count: 1
allele frequency: 8.359806052499582e-6
allele num: 119620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-39C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-39C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-39C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-39C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-39C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-39C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-39C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-39C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-39C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-39C>T
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-111778609-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778609
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778609
    reference: chr 1
allele count: 2
allele frequency: 1.670955452327641e-5
allele num: 119692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-37C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-37C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-37C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-37C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-37C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-37C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-37C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-37C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-37C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-37C>A
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33697
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

1-111778609-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778609
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778609
    reference: chr 1
allele count: 1
allele frequency: 8.354777261638205e-6
allele num: 119692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-37C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-37C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-37C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-37C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-37C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-37C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-37C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-37C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-37C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-37C>G
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

1-111778609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778609
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778609
    reference: chr 1
allele count: 1
allele frequency: 8.354777261638205e-6
allele num: 119692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-37C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-37C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-37C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-37C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-37C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-37C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-37C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-37C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-37C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-37C>T
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-111778610-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778610
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778610
    reference: chr 1
allele count: 24
allele frequency: 2.003037940876997e-4
allele num: 119818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-36G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-36G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-36G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-36G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-36G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-36G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-36G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-36G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-36G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-36G>A
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

1-111778610-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778610
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778610
    reference: chr 1
allele count: 3
allele frequency: 2.503797426096246e-5
allele num: 119818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-36G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-36G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-36G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-36G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-36G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-36G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-36G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-36G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-36G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-36G>C
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3807
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

1-111778628-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778628
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778628
    reference: chr 1
allele count: 7
allele frequency: 5.8115400581154e-5
allele num: 120450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-18T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-18T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-18T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-18T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-18T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-18T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-18T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-18T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-18T>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-18T>C
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

1-111778630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778630
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778630
    reference: chr 1
allele count: 1
allele frequency: 8.297515723792297e-6
allele num: 120518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-16G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-16G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-16G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-16G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-16G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-16G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-16G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-16G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-16G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-16G>A
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35380
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10194
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

1-111778637-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778637
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778637
    reference: chr 1
allele count: 4
allele frequency: 3.313397723695764e-5
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-9G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-9G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-9G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-9G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-9G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-9G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-9G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-9G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-9G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-9G>A
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-111778640-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778640
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778640
    reference: chr 1
allele count: 8
allele frequency: 6.621639517944644e-5
allele num: 120816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-6C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-6C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-6C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-6C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-6C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-6C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-6C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-6C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-6C>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-6C>G
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 8.25e1
  variant carriers: 0
hgvs: c.606-6C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

1-111778640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778640
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778640
    reference: chr 1
allele count: 1
allele frequency: 8.277049397430804e-6
allele num: 120816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.369-6C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.606-6C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.369-6C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.369-6C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.312-6C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.236-6C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.168-6C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.606-6C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.576-6C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.606-6C>T
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
hgvs: c.606-6C>T
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-111778649-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778649
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778649
    reference: chr 1
allele count: 1
allele frequency: 8.259138737012504e-6
allele num: 121078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.372T>A
  hgvsp: ENSP00000436272.1:p.Asp124Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.372T>A
  hgvsp: ENSP00000432049.1:p.Asp124Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.239T>A
  hgvsp: ENSP00000433176.2:p.Asp80Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.315T>A
  hgvsp: ENSP00000431978.1:p.Asp105Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.372T>A
  hgvsp: ENSP00000437086.1:p.Asp124Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.609T>A
  hgvsp: ENSP00000358763.4:p.Asp203Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.609T>A
  hgvsp: ENSP00000436077.1:p.Asp203Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.579T>A
  hgvsp: ENSP00000358759.2:p.Asp193Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.609T>A
  hgvsp: ENSP00000437082.1:p.Asp203Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.171T>A
  hgvsp: ENSP00000435250.1:p.Asp57Glu
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp203Glu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

1-111778652-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778652
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778652
    reference: chr 1
allele count: 1
allele frequency: 8.254911672445104e-6
allele num: 121140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.242G>A
  hgvsp: ENST00000533831.2:c.242G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.375G>A
  hgvsp: ENST00000524472.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.318G>A
  hgvsp: ENST00000467038.2:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.174G>A
  hgvsp: ENST00000497220.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.375G>A
  hgvsp: ENST00000477185.2:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.582G>A
  hgvsp: ENST00000369744.2:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.612G>A
  hgvsp: ENST00000528451.1:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.612G>A
  hgvsp: ENST00000369748.4:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.375G>A
  hgvsp: ENST00000466741.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.612G>A
  hgvsp: ENST00000445067.2:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu204Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

1-111778654-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778654
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778654
    reference: chr 1
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.176A>G
  hgvsp: ENSP00000435250.1:p.Asp59Gly
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.377A>G
  hgvsp: ENSP00000437086.1:p.Asp126Gly
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.377A>G
  hgvsp: ENSP00000432049.1:p.Asp126Gly
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.320A>G
  hgvsp: ENSP00000431978.1:p.Asp107Gly
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.614A>G
  hgvsp: ENSP00000437082.1:p.Asp205Gly
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.614A>G
  hgvsp: ENSP00000436077.1:p.Asp205Gly
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.614A>G
  hgvsp: ENSP00000358763.4:p.Asp205Gly
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.377A>G
  hgvsp: ENSP00000436272.1:p.Asp126Gly
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.584A>G
  hgvsp: ENSP00000358759.2:p.Asp195Gly
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.244A>G
  hgvsp: ENSP00000433176.2:p.Asp82Gly
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp205Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

1-111778657-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778657
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778657
    reference: chr 1
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.380T>C
  hgvsp: ENSP00000436272.1:p.Phe127Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.617T>C
  hgvsp: ENSP00000436077.1:p.Phe206Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.380T>C
  hgvsp: ENSP00000432049.1:p.Phe127Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.617T>C
  hgvsp: ENSP00000437082.1:p.Phe206Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.380T>C
  hgvsp: ENSP00000437086.1:p.Phe127Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.179T>C
  hgvsp: ENSP00000435250.1:p.Phe60Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.617T>C
  hgvsp: ENSP00000358763.4:p.Phe206Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.247T>C
  hgvsp: ENSP00000433176.2:p.Phe83Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.587T>C
  hgvsp: ENSP00000358759.2:p.Phe196Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.323T>C
  hgvsp: ENSP00000431978.1:p.Phe108Ser
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16684
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe206Ser
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

1-111778663-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778663
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778663
    reference: chr 1
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.253A>G
  hgvsp: ENSP00000433176.2:p.Asn85Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.623A>G
  hgvsp: ENSP00000358763.4:p.Asn208Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.386A>G
  hgvsp: ENSP00000437086.1:p.Asn129Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.185A>G
  hgvsp: ENSP00000435250.1:p.Asn62Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.386A>G
  hgvsp: ENSP00000436272.1:p.Asn129Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.329A>G
  hgvsp: ENSP00000431978.1:p.Asn110Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.623A>G
  hgvsp: ENSP00000436077.1:p.Asn208Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.593A>G
  hgvsp: ENSP00000358759.2:p.Asn198Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.386A>G
  hgvsp: ENSP00000432049.1:p.Asn129Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.623A>G
  hgvsp: ENSP00000437082.1:p.Asn208Ser
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn208Ser
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-111778664-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778664
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778664
    reference: chr 1
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.254C>T
  hgvsp: ENST00000533831.2:c.254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.387C>T
  hgvsp: ENST00000477185.2:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.624C>T
  hgvsp: ENST00000528451.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.624C>T
  hgvsp: ENST00000445067.2:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.624C>T
  hgvsp: ENST00000369748.4:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.330C>T
  hgvsp: ENST00000467038.2:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.387C>T
  hgvsp: ENST00000466741.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.186C>T
  hgvsp: ENST00000497220.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.387C>T
  hgvsp: ENST00000524472.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.594C>T
  hgvsp: ENST00000369744.2:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn208Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-111778665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778665
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778665
    reference: chr 1
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.625C>T
  hgvsp: ENSP00000358763.4:p.Leu209Phe
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.625C>T
  hgvsp: ENSP00000437082.1:p.Leu209Phe
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.331C>T
  hgvsp: ENSP00000431978.1:p.Leu111Phe
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.388C>T
  hgvsp: ENSP00000436272.1:p.Leu130Phe
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.255C>T
  hgvsp: ENSP00000433176.2:p.Leu86Phe
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.187C>T
  hgvsp: ENSP00000435250.1:p.Leu63Phe
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.625C>T
  hgvsp: ENSP00000436077.1:p.Leu209Phe
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.595C>T
  hgvsp: ENSP00000358759.2:p.Leu199Phe
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.388C>T
  hgvsp: ENSP00000432049.1:p.Leu130Phe
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.388C>T
  hgvsp: ENSP00000437086.1:p.Leu130Phe
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu209Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

1-111778679-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778679
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778679
    reference: chr 1
allele count: 8
allele frequency: 6.59043727551323e-5
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.269C>G
  hgvsp: ENSP00000433176.2:p.Asp90Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.345C>G
  hgvsp: ENSP00000431978.1:p.Asp115Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.402C>G
  hgvsp: ENSP00000432049.1:p.Asp134Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.402C>G
  hgvsp: ENSP00000436272.1:p.Asp134Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.639C>G
  hgvsp: ENSP00000437082.1:p.Asp213Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.639C>G
  hgvsp: ENSP00000358763.4:p.Asp213Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.609C>G
  hgvsp: ENSP00000358759.2:p.Asp203Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.639C>G
  hgvsp: ENSP00000436077.1:p.Asp213Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.402C>G
  hgvsp: ENSP00000437086.1:p.Asp134Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.201C>G
  hgvsp: ENSP00000435250.1:p.Asp67Glu
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8500
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp213Glu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-111778684-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778684
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778684
    reference: chr 1
allele count: 17
allele frequency: 1.400421774087255e-4
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.350A>G
  hgvsp: ENSP00000431978.1:p.His117Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.274A>G
  hgvsp: ENSP00000433176.2:p.His92Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.407A>G
  hgvsp: ENSP00000437086.1:p.His136Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.407A>G
  hgvsp: ENSP00000436272.1:p.His136Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.206A>G
  hgvsp: ENSP00000435250.1:p.His69Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.644A>G
  hgvsp: ENSP00000436077.1:p.His215Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.644A>G
  hgvsp: ENSP00000437082.1:p.His215Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.644A>G
  hgvsp: ENSP00000358763.4:p.His215Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.407A>G
  hgvsp: ENSP00000432049.1:p.His136Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.614A>G
  hgvsp: ENSP00000358759.2:p.His205Arg
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His215Arg
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-111778688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778688
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778688
    reference: chr 1
allele count: 43
allele frequency: 3.542126593956968e-4
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.648G>A
  hgvsp: ENST00000369748.4:c.648G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.278G>A
  hgvsp: ENST00000533831.2:c.278G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.354G>A
  hgvsp: ENST00000467038.2:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.618G>A
  hgvsp: ENST00000369744.2:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.210G>A
  hgvsp: ENST00000497220.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.411G>A
  hgvsp: ENST00000524472.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.648G>A
  hgvsp: ENST00000528451.1:c.648G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.411G>A
  hgvsp: ENST00000477185.2:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.411G>A
  hgvsp: ENST00000466741.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.648G>A
  hgvsp: ENST00000445067.2:c.648G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly216Gly
num of homozygotes: 1
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD

1-111778692-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778692
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778692
    reference: chr 1
allele count: 28
allele frequency: 2.306425041186161e-4
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.652T>C
  hgvsp: ENSP00000436077.1:p.Trp218Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.415T>C
  hgvsp: ENSP00000432049.1:p.Trp139Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.282T>C
  hgvsp: ENSP00000433176.2:p.Trp95Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.214T>C
  hgvsp: ENSP00000435250.1:p.Trp72Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.652T>C
  hgvsp: ENSP00000437082.1:p.Trp218Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.415T>C
  hgvsp: ENSP00000436272.1:p.Trp139Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.652T>C
  hgvsp: ENSP00000358763.4:p.Trp218Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.622T>C
  hgvsp: ENSP00000358759.2:p.Trp208Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.415T>C
  hgvsp: ENSP00000437086.1:p.Trp139Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.358T>C
  hgvsp: ENSP00000431978.1:p.Trp120Arg
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 9.75e1
  variant carriers: 28
hgvs: p.Trp218Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

1-111778694-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778694
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778694
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.216G>A
  hgvsp: ENSP00000435250.1:p.Trp72Ter
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.417G>A
  hgvsp: ENSP00000437086.1:p.Trp139Ter
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.654G>A
  hgvsp: ENSP00000437082.1:p.Trp218Ter
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.417G>A
  hgvsp: ENSP00000436272.1:p.Trp139Ter
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.360G>A
  hgvsp: ENSP00000431978.1:p.Trp120Ter
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.417G>A
  hgvsp: ENSP00000432049.1:p.Trp139Ter
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.284G>A
  hgvsp: ENSP00000433176.2:p.Trp95Ter
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.654G>A
  hgvsp: ENSP00000436077.1:p.Trp218Ter
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.654G>A
  hgvsp: ENSP00000358763.4:p.Trp218Ter
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.624G>A
  hgvsp: ENSP00000358759.2:p.Trp208Ter
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp218Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-111778701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778701
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778701
    reference: chr 1
allele count: 16
allele frequency: 1.317935454111135e-4
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.223C>T
  hgvsp: ENSP00000435250.1:p.Pro75Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.631C>T
  hgvsp: ENSP00000358759.2:p.Pro211Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.661C>T
  hgvsp: ENSP00000358763.4:p.Pro221Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436077
  ensembl transcript: ENST00000528451
  gene symbol: CHI3L2
  hgvsc: ENST00000528451.1:c.661C>T
  hgvsp: ENST00000528451.1:c.661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.367C>T
  hgvsp: ENSP00000431978.1:p.Pro123Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.424C>T
  hgvsp: ENSP00000432049.1:p.Pro142Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.291C>T
  hgvsp: ENSP00000433176.2:p.Pro98Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.424C>T
  hgvsp: ENSP00000436272.1:p.Pro142Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.424C>T
  hgvsp: ENSP00000437086.1:p.Pro142Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.661C>T
  hgvsp: ENSP00000437082.1:p.Pro221Ser
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro221Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

1-111778704-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778704
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778704
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.226C>G
  hgvsp: ENSP00000435250.1:p.Leu76Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.427C>G
  hgvsp: ENSP00000432049.1:p.Leu143Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.664C>G
  hgvsp: ENSP00000358763.4:p.Leu222Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.370C>G
  hgvsp: ENSP00000431978.1:p.Leu124Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.427C>G
  hgvsp: ENSP00000437086.1:p.Leu143Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.664C>G
  hgvsp: ENSP00000437082.1:p.Leu222Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.427C>G
  hgvsp: ENSP00000436272.1:p.Leu143Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.294C>G
  hgvsp: ENSP00000433176.2:p.Leu99Val
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.634C>G
  hgvsp: ENSP00000358759.2:p.Leu212Val
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36734
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu222Val
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

1-111778711-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778711
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778711
    reference: chr 1
allele count: 4
allele frequency: 3.294838635277837e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.233C>G
  hgvsp: ENSP00000435250.1:p.Thr78Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.434C>G
  hgvsp: ENSP00000436272.1:p.Thr145Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.377C>G
  hgvsp: ENSP00000431978.1:p.Thr126Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.434C>G
  hgvsp: ENSP00000437086.1:p.Thr145Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.301C>G
  hgvsp: ENSP00000433176.2:p.Thr101Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.671C>G
  hgvsp: ENSP00000358763.4:p.Thr224Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.671C>G
  hgvsp: ENSP00000437082.1:p.Thr224Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.434C>G
  hgvsp: ENSP00000432049.1:p.Thr145Ser
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.641C>G
  hgvsp: ENSP00000358759.2:p.Thr214Ser
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3665
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr224Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-111778712-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778712
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778712
    reference: chr 1
allele count: 7
allele frequency: 5.765967611736215e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.435T>C
  hgvsp: ENST00000466741.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.672T>C
  hgvsp: ENST00000369748.4:c.672T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.302T>C
  hgvsp: ENST00000533831.2:c.302T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.672T>C
  hgvsp: ENST00000445067.2:c.672T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.435T>C
  hgvsp: ENST00000524472.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.642T>C
  hgvsp: ENST00000369744.2:c.642T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.435T>C
  hgvsp: ENST00000477185.2:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.234T>C
  hgvsp: ENST00000497220.1:c.234T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.378T>C
  hgvsp: ENST00000467038.2:c.378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr224Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

1-111778717-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778717
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778717
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.239A>G
  hgvsp: ENSP00000435250.1:p.His80Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.383A>G
  hgvsp: ENSP00000431978.1:p.His128Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.440A>G
  hgvsp: ENSP00000432049.1:p.His147Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.440A>G
  hgvsp: ENSP00000437086.1:p.His147Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.677A>G
  hgvsp: ENSP00000437082.1:p.His226Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.647A>G
  hgvsp: ENSP00000358759.2:p.His216Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.307A>G
  hgvsp: ENSP00000433176.2:p.His103Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.440A>G
  hgvsp: ENSP00000436272.1:p.His147Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.677A>G
  hgvsp: ENSP00000358763.4:p.His226Arg
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His226Arg
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

1-111778723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778723
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778723
    reference: chr 1
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.313G>A
  hgvsp: ENSP00000433176.2:p.Ser105Asn
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.683G>A
  hgvsp: ENSP00000437082.1:p.Ser228Asn
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.245G>A
  hgvsp: ENSP00000435250.1:p.Ser82Asn
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.446G>A
  hgvsp: ENSP00000436272.1:p.Ser149Asn
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.653G>A
  hgvsp: ENSP00000358759.2:p.Ser218Asn
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.446G>A
  hgvsp: ENSP00000437086.1:p.Ser149Asn
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.683G>A
  hgvsp: ENSP00000358763.4:p.Ser228Asn
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.389G>A
  hgvsp: ENSP00000431978.1:p.Ser130Asn
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.446G>A
  hgvsp: ENSP00000432049.1:p.Ser149Asn
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser228Asn
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

1-111778724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778724
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778724
    reference: chr 1
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.447C>T
  hgvsp: ENST00000524472.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.314C>T
  hgvsp: ENST00000533831.2:c.314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.447C>T
  hgvsp: ENST00000477185.2:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.684C>T
  hgvsp: ENST00000369748.4:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.246C>T
  hgvsp: ENST00000497220.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.684C>T
  hgvsp: ENST00000445067.2:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.447C>T
  hgvsp: ENST00000466741.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.654C>T
  hgvsp: ENST00000369744.2:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.390C>T
  hgvsp: ENST00000467038.2:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser228Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-111778733-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778733
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778733
    reference: chr 1
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.456C>A
  hgvsp: ENSP00000432049.1:p.Ser152Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.456C>A
  hgvsp: ENSP00000436272.1:p.Ser152Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.693C>A
  hgvsp: ENSP00000437082.1:p.Ser231Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.693C>A
  hgvsp: ENSP00000358763.4:p.Ser231Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.663C>A
  hgvsp: ENSP00000358759.2:p.Ser221Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.456C>A
  hgvsp: ENSP00000437086.1:p.Ser152Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.323C>A
  hgvsp: ENSP00000433176.2:p.Ser108Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.255C>A
  hgvsp: ENSP00000435250.1:p.Ser85Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.399C>A
  hgvsp: ENSP00000431978.1:p.Ser133Arg
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser231Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

1-111778738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778738
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778738
    reference: chr 1
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.260G>A
  hgvsp: ENSP00000435250.1:p.Gly87Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.404G>A
  hgvsp: ENSP00000431978.1:p.Gly135Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.328G>A
  hgvsp: ENSP00000433176.2:p.Gly110Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.461G>A
  hgvsp: ENSP00000436272.1:p.Gly154Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.698G>A
  hgvsp: ENSP00000358763.4:p.Gly233Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.668G>A
  hgvsp: ENSP00000358759.2:p.Gly223Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.461G>A
  hgvsp: ENSP00000432049.1:p.Gly154Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.698G>A
  hgvsp: ENSP00000437082.1:p.Gly233Glu
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.461G>A
  hgvsp: ENSP00000437086.1:p.Gly154Glu
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3647
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly233Glu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

1-111778742-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778742
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778742
    reference: chr 1
allele count: 3
allele frequency: 2.473043822336532e-5
allele num: 121308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.465G>C
  hgvsp: ENSP00000432049.1:p.Trp155Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.465G>C
  hgvsp: ENSP00000436272.1:p.Trp155Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.702G>C
  hgvsp: ENSP00000437082.1:p.Trp234Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.408G>C
  hgvsp: ENSP00000431978.1:p.Trp136Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.332G>C
  hgvsp: ENSP00000433176.2:p.Trp111Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.264G>C
  hgvsp: ENSP00000435250.1:p.Trp88Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.465G>C
  hgvsp: ENSP00000437086.1:p.Trp155Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.672G>C
  hgvsp: ENSP00000358759.2:p.Trp224Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.702G>C
  hgvsp: ENSP00000358763.4:p.Trp234Cys
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp234Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

1-111778744-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778744
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778744
    reference: chr 1
allele count: 2
allele frequency: 1.648994937585542e-5
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.704A>G
  hgvsp: ENSP00000358763.4:p.Gln235Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.467A>G
  hgvsp: ENSP00000432049.1:p.Gln156Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.704A>G
  hgvsp: ENSP00000437082.1:p.Gln235Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.266A>G
  hgvsp: ENSP00000435250.1:p.Gln89Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.467A>G
  hgvsp: ENSP00000437086.1:p.Gln156Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.334A>G
  hgvsp: ENSP00000433176.2:p.Gln112Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.467A>G
  hgvsp: ENSP00000436272.1:p.Gln156Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.674A>G
  hgvsp: ENSP00000358759.2:p.Gln225Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.410A>G
  hgvsp: ENSP00000431978.1:p.Gln137Arg
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3265
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln235Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/1-111778760-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778760
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778760
    reference: chr 1
allele count: 30
allele frequency: 2.480609899287238e-4
allele num: 120938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.483C>A
  hgvsp: ENSP00000436272.1:p.Ser161Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.282C>A
  hgvsp: ENSP00000435250.1:p.Ser94Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.690C>A
  hgvsp: ENSP00000358759.2:p.Ser230Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.483C>A
  hgvsp: ENSP00000437086.1:p.Ser161Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.483C>A
  hgvsp: ENSP00000432049.1:p.Ser161Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.426C>A
  hgvsp: ENSP00000431978.1:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.720C>A
  hgvsp: ENSP00000437082.1:p.Ser240Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.350C>A
  hgvsp: ENSP00000433176.2:p.Ser117Arg
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.720C>A
  hgvsp: ENSP00000358763.4:p.Ser240Arg
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16496
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser240Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

1-111778768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778768
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778768
    reference: chr 1
allele count: 4
allele frequency: 3.314111486710413e-5
allele num: 120696
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.728A>G
  hgvsp: ENSP00000437082.1:p.Tyr243Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000431978
  ensembl transcript: ENST00000467038
  gene symbol: CHI3L2
  hgvsc: ENST00000467038.2:c.434A>G
  hgvsp: ENSP00000431978.1:p.Tyr145Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.491A>G
  hgvsp: ENSP00000432049.1:p.Tyr164Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.491A>G
  hgvsp: ENSP00000437086.1:p.Tyr164Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.290A>G
  hgvsp: ENSP00000435250.1:p.Tyr97Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.491A>G
  hgvsp: ENSP00000436272.1:p.Tyr164Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.698A>G
  hgvsp: ENSP00000358759.2:p.Tyr233Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.728A>G
  hgvsp: ENSP00000358763.4:p.Tyr243Cys
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.358A>G
  hgvsp: ENSP00000433176.2:p.Tyr120Cys
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr243Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-111778775-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778775
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778775
    reference: chr 1
allele count: 2
allele frequency: 1.663644379377464e-5
allele num: 120218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.498G>A
  hgvsp: ENST00000466741.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.297G>A
  hgvsp: ENST00000497220.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.365G>A
  hgvsp: ENST00000533831.2:c.365G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.498G>A
  hgvsp: ENST00000477185.2:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.735G>A
  hgvsp: ENST00000369748.4:c.735G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.735G>A
  hgvsp: ENST00000445067.2:c.735G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.498G>A
  hgvsp: ENST00000524472.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.705G>A
  hgvsp: ENST00000369744.2:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
hgvs: c.735G>A
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

1-111778779-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778779
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778779
    reference: chr 1
allele count: 4
allele frequency: 3.338619480844671e-5
allele num: 119810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.365+4A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.498+4A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.735+4A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.735+4A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.498+4A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.297+4A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.705+4A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.498+4A>G
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
hgvs: c.735+4A>G
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-111778779-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778779
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778779
    reference: chr 1
allele count: 2
allele frequency: 1.669309740422335e-5
allele num: 119810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.365+4A>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.705+4A>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.498+4A>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.498+4A>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.735+4A>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.735+4A>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.297+4A>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.498+4A>C
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3597
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9911
  bin: 6.75e1
  variant carriers: 0
hgvs: c.735+4A>C
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-111778780-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778780
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778780
    reference: chr 1
allele count: 1
allele frequency: 8.35812911637859e-6
allele num: 119644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.735+5G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.735+5G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.297+5G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.498+5G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.705+5G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.498+5G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.365+5G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.498+5G>A
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22976
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
hgvs: c.735+5G>A
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-111778789-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778789
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778789
    reference: chr 1
allele count: 1
allele frequency: 8.45337120443633e-6
allele num: 118296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.498+14G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.498+14G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.735+14G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.297+14G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.705+14G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.735+14G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.365+14G>C
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.498+14G>C
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

1-111778795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778795
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778795
    reference: chr 1
allele count: 4
allele frequency: 3.39472120852075e-5
allele num: 117830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.705+20C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.365+20C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.735+20C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.297+20C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.498+20C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.735+20C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.498+20C>T
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.498+20C>T
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28248
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-111778796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778796
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778796
    reference: chr 1
allele count: 2
allele frequency: 1.69848495142333e-5
allele num: 117752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.498+21G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.498+21G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.705+21G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.498+21G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.735+21G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.735+21G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.365+21G>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.297+21G>A
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3545
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-111778797-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778797
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778797
    reference: chr 1
allele count: 1
allele frequency: 8.495887990212738e-6
allele num: 117704
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.735+22C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.365+22C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.498+22C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.705+22C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.498+22C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.498+22C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.735+22C>A
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.297+22C>A
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

1-111778798-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778798
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778798
    reference: chr 1
allele count: 1
allele frequency: 8.504558443325623e-6
allele num: 117584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.705+23A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.498+23A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.498+23A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.735+23A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.297+23A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.365+23A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.735+23A>G
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.498+23A>G
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

1-111778798-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111778798
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 111778797
    reference: chr 1
allele count: 1
allele frequency: 8.504558443325623e-6
allele num: 117584
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437082
  ensembl transcript: ENST00000445067
  gene symbol: CHI3L2
  hgvsc: ENST00000445067.2:c.735+27delG
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000433176
  ensembl transcript: ENST00000533831
  gene symbol: CHI3L2
  hgvsc: ENST00000533831.2:c.365+27delG
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000432049
  ensembl transcript: ENST00000524472
  gene symbol: CHI3L2
  hgvsc: ENST00000524472.1:c.498+27delG
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000435250
  ensembl transcript: ENST00000497220
  gene symbol: CHI3L2
  hgvsc: ENST00000497220.1:c.297+27delG
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000437086
  ensembl transcript: ENST00000466741
  gene symbol: CHI3L2
  hgvsc: ENST00000466741.1:c.498+27delG
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000436272
  ensembl transcript: ENST00000477185
  gene symbol: CHI3L2
  hgvsc: ENST00000477185.2:c.498+27delG
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358759
  ensembl transcript: ENST00000369744
  gene symbol: CHI3L2
  hgvsc: ENST00000369744.2:c.705+27delG
  variant of: http://identifiers.org/hgnc/1933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064886
  ensembl protein: ENSP00000358763
  ensembl transcript: ENST00000369748
  gene symbol: CHI3L2
  hgvsc: ENST00000369748.4:c.735+27delG
  variant of: http://identifiers.org/hgnc/1933
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12492
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: AG

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4478
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5536
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1504
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3660
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1889
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47433
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.687732e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.183e0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e0

QD
type: SiteQuality
SIO_000300: 1.328e1

GenotypeDepth
all individuals: 5024
bin: 4.75e1
variant carriers: 465

GenotypeDepth
all individuals: 149
bin: 1.25e1
variant carriers: 12

GenotypeDepth
all individuals: 93
bin: 1.75e1
variant carriers: 37

GenotypeDepth
all individuals: 2377
bin: 2.75e1
variant carriers: 93

GenotypeDepth
all individuals: 4055
bin: 4.25e1
variant carriers: 314

GenotypeDepth
all individuals: 5733
bin: 5.75e1
variant carriers: 736

GenotypeQuality
all individuals: 4635
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1146
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1194
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1459
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1014
bin: 7.75e1
variant carriers: 9

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 49437
bin: 9.75e1
variant carriers: 11901

Other
type: Population
allele count: 102
allele frequency: 1.123348017621145e-1
allele num: 908
num of homozygotes: 5

African
type: Population
allele count: 377
allele frequency: 3.640401699497876e-2
allele num: 10356
num of homozygotes: 5

South Asian
type: Population
allele count: 2714
allele frequency: 1.644848484848485e-1
allele num: 16500
num of homozygotes: 236

European (Finnish)
type: Population
allele count: 777
allele frequency: 1.175491679273827e-1
allele num: 6610
num of homozygotes: 50

European (Non-Finnish)
type: Population
allele count: 8090
allele frequency: 1.214022029472673e-1
allele num: 66638
num of homozygotes: 454

Latino
type: Population
allele count: 642
allele frequency: 5.551712210307852e-2
allele num: 11564
num of homozygotes: 25

East Asian
type: Population
allele count: 32
allele frequency: 3.704561241028016e-3
allele num: 8638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

DP
type: SiteQuality
SIO_000300: 3.824659e6

VQSLOD
type: SiteQuality
SIO_000300: 6.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.81e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

QD
type: SiteQuality
SIO_000300: 1.499e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

GenotypeDepth
all individuals: 3433
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1430
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6193
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2529
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4438
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6086
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46286
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 197
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.031405359524675e-4
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 2.491e0

DP
type: SiteQuality
SIO_000300: 3.522512e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

QD
type: SiteQuality
SIO_000300: 1.719e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 6.005825650881355e-4
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 2.571082879612825e-3
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
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SIO_000300: 4.35e-1

InbreedingCoeff
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SIO_000300: -5.0e-4

QD
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SIO_000300: 1.342e1

BaseQRankSum
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SIO_000300: -3.7e0

MQRankSum
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SIO_000300: 3.57e-1

ClippingRankSum
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SIO_000300: -2.13e-1

FS
type: SiteQuality
SIO_000300: 5.16e-1

DP
type: SiteQuality
SIO_000300: 3.522426e6

VQSLOD
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SIO_000300: 4.17e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.659969088098918e-4
allele num: 10352
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

QD
type: SiteQuality
SIO_000300: 1.517e1

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 3.520837e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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variant carriers: 20

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 108

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 293

South Asian
type: Population
allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.952186448822682e-4
allele num: 66592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 1.470079557246628e-3
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 263
allele frequency: 2.541553923463471e-2
allele num: 10348
num of homozygotes: 2

VQSLOD
type: SiteQuality
SIO_000300: 6.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

DP
type: SiteQuality
SIO_000300: 3.525229e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.27e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
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SIO_000300: -9.9e-2

MQRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 3.525229e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503081316699233e-5
allele num: 66530
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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DP
type: SiteQuality
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FS
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SIO_000300: 7.636e0

MQ
type: SiteQuality
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GenotypeDepth
all individuals: 1885
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.007699711260828e-5
allele num: 66496
num of homozygotes: 0

ClippingRankSum
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VQSLOD
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DP
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MQ
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8630
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Other
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66318
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DP
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SIO_000300: 3.495334e6

ReadPosRankSum
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FS
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

Latino
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allele num: 11544
num of homozygotes: 0

East Asian
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South Asian
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Other
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ReadPosRankSum
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SIO_000300: 1.21e0

BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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FS
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SIO_000300: 6.17e-1

MQRankSum
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SIO_000300: 1.19e0

ClippingRankSum
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SIO_000300: 8.82e-1

DP
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SIO_000300: 3.493084e6

QD
type: SiteQuality
SIO_000300: 1.244e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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South Asian
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num of homozygotes: 0

East Asian
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66182
num of homozygotes: 0

African
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South Asian
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East Asian
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Latino
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European (Finnish)
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Other
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ReadPosRankSum
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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FS
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QD
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DP
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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ReadPosRankSum
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MQ
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InbreedingCoeff
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QD
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024620410138528e-5
allele num: 66124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 3.466195e6

QD
type: SiteQuality
SIO_000300: 1.034e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 2.925e0

VQSLOD
type: SiteQuality
SIO_000300: -8.54e-2

GenotypeQuality
all individuals: 229
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 127

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15166
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 117
allele frequency: 1.135922330097087e-2
allele num: 10300
num of homozygotes: 2

Latino
type: Population
allele count: 7
allele frequency: 6.066909343040389e-4
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.546694553059925e-5
allele num: 65982
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.912e0

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

DP
type: SiteQuality
SIO_000300: 3.459299e6

FS
type: SiteQuality
SIO_000300: 5.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.08e-1

GenotypeQuality
all individuals: 150
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.477051460361613e-4
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15068
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

QD
type: SiteQuality
SIO_000300: 1.316e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

DP
type: SiteQuality
SIO_000300: 3.454988e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.008e0

GenotypeQuality
all individuals: 1070
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 11

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.062408936376882e-4
allele num: 65888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.600554785020804e-4
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.710623422023694e-5
allele num: 10298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14860
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.452951e6

VQSLOD
type: SiteQuality
SIO_000300: 4.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 1.261e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 101
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 488
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variant carriers: 0

GenotypeQuality
all individuals: 32778
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15104
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.837132e6

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.511e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66340
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.257e0

MQRankSum
type: SiteQuality
SIO_000300: 2.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.417e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.839617e6

FS
type: SiteQuality
SIO_000300: 3.116e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.112e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.358e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15252
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.417e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.112e0

FS
type: SiteQuality
SIO_000300: 3.116e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.257e0

QD
type: SiteQuality
SIO_000300: 1.358e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 1.839617e6

GenotypeQuality
all individuals: 33490
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15166
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.841644e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 527
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GenotypeQuality
all individuals: 47
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GenotypeQuality
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GenotypeQuality
all individuals: 231
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GenotypeQuality
all individuals: 2835
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GenotypeQuality
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GenotypeQuality
all individuals: 1959
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GenotypeQuality
all individuals: 239
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GenotypeQuality
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GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 1086
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variant carriers: 0

Latino
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allele count: 0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.015226895823911e-5
allele num: 66330
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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VQSLOD
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QD
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FS
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MQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -2.114e0

InbreedingCoeff
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DP
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SIO_000300: 1.843977e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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DP
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506886471173262e-5
allele num: 66362
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 23
allele frequency: 2.212815085626323e-3
allele num: 10394
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.845858e6

VQSLOD
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MQRankSum
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InbreedingCoeff
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SIO_000300: 2.0e-4

ReadPosRankSum
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QD
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506886471173262e-5
allele num: 66362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15330
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.924187030979411e-4
allele num: 10394
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.288e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
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ReadPosRankSum
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SIO_000300: 1.07e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 2.883506343713956e-4
allele num: 10404
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South Asian
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East Asian
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allele frequency: 4.623208506703652e-4
allele num: 8652
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Latino
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

African
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East Asian
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Latino
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allele frequency: 8.640055296353897e-5
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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South Asian
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Other
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East Asian
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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FS
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QD
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.051524710830704e-4
allele num: 66570
num of homozygotes: 0

East Asian
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South Asian
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Latino
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European (Finnish)
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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DP
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Latino
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South Asian
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MQRankSum
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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African
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South Asian
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Latino
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European (Finnish)
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DP
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ReadPosRankSum
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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Latino
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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ClippingRankSum
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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QD
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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FS
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ReadPosRankSum
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QD
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DP
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

FS
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SIO_000300: 6.32e-1

ReadPosRankSum
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SIO_000300: -3.23e-1

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: -2.67e-1

DP
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SIO_000300: 1.873141e6

QD
type: SiteQuality
SIO_000300: 1.298e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.251e0

VQSLOD
type: SiteQuality
SIO_000300: 9.29e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1971
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.239854633555421e-4
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.87418e6

MQRankSum
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SIO_000300: -2.2e-1

VQSLOD
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SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.3e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.045e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 16
allele frequency: 9.691096305269534e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.43e-1

QD
type: SiteQuality
SIO_000300: 1.323e1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

BaseQRankSum
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SIO_000300: -6.7e-2

ReadPosRankSum
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SIO_000300: -4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 1.873833e6

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 42

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 717
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 33
allele frequency: 4.989416389476867e-3
allele num: 6614
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.348799568384138e-4
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 1.377e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.796e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.73e-2

FS
type: SiteQuality
SIO_000300: 5.91e-1

DP
type: SiteQuality
SIO_000300: 1.872673e6

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 2.21026330962906e-3
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.865848e6

MQRankSum
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SIO_000300: 3.9e-2

QD
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.739e0

MQRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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Latino
type: Population
allele count: 16
allele frequency: 1.381931248920366e-3
allele num: 11578
num of homozygotes: 0

East Asian
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allele num: 8654
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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MQ
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SIO_000300: 5.976e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.482e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 1.986e0

VQSLOD
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SIO_000300: 1.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
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SIO_000300: 1.859456e6

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.859311e6

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.549e1

ClippingRankSum
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SIO_000300: 1.24e-1

MQRankSum
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SIO_000300: 8.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.996e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

European (Non-Finnish)
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allele count: 7
allele frequency: 1.048972007432716e-4
allele num: 66732
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
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SIO_000300: 7.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: -4.691e0

DP
type: SiteQuality
SIO_000300: 1.858867e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.248e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

FS
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

DP
type: SiteQuality
SIO_000300: 1.857987e6

QD
type: SiteQuality
SIO_000300: 1.176e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.291e0

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.498e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.857697e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.486e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

QD
type: SiteQuality
SIO_000300: 1.537e1

MQ
type: SiteQuality
SIO_000300: 5.935e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.39e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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African
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Other
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele num: 6614
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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ClippingRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
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allele count: 0
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South Asian
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allele frequency: 1.817741153659719e-4
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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FS
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MQ
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

FS
type: SiteQuality
SIO_000300: 1.147e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.854135e6

QD
type: SiteQuality
SIO_000300: 1.558e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 30

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.653513326410523e-4
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.407608041410858e-4
allele num: 66456
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214034235765449e-4
allele num: 16474
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.119e0

DP
type: SiteQuality
SIO_000300: 1.843983e6

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

QD
type: SiteQuality
SIO_000300: 1.381e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.822157434402332e-4
allele num: 16464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.162e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

QD
type: SiteQuality
SIO_000300: 1.434e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.835529e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.948178453146308e-4
allele num: 10266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 1.4488e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.534e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

QD
type: SiteQuality
SIO_000300: 1.459e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.268e0

DP
type: SiteQuality
SIO_000300: 1.82076e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.792401096748923e-5
allele num: 10212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.562598856308554e-5
allele num: 65752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.361e0

MQRankSum
type: SiteQuality
SIO_000300: -2.76e-1

DP
type: SiteQuality
SIO_000300: 1.806173e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

QD
type: SiteQuality
SIO_000300: 1.294e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.041732570872369e-5
allele num: 65752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.361e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.294e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65656
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.798669e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542638528939899e-5
allele num: 64824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
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African
type: Population
allele count: 0
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allele num: 9992
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.71444e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2445
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GenotypeQuality
all individuals: 8192
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.764913519237557e-4
allele num: 11332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548802775454574e-5
allele num: 64566
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011122345803842e-4
allele num: 9890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.629e0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

QD
type: SiteQuality
SIO_000300: 2.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

DP
type: SiteQuality
SIO_000300: 1.676081e6

GenotypeQuality
all individuals: 659
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28467
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8095
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.012555690562981e-4
allele num: 9876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64548
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.202212070209185e-4
allele num: 8318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.673474e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.376e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeQuality
all individuals: 5724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550628004341758e-5
allele num: 64490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 6.41e0

VQSLOD
type: SiteQuality
SIO_000300: -1.477e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.586e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.473e0

MQRankSum
type: SiteQuality
SIO_000300: -1.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.662253e6

GenotypeQuality
all individuals: 7957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3543
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 658
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5952
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551831160769708e-5
allele num: 64440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.125e1

DP
type: SiteQuality
SIO_000300: 1.65062e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0