2-171974385-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974385
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974385
    reference: chr 2
allele count: 1
allele frequency: 8.618757864616552e-6
allele num: 116026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-18A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-18A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-18A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-18A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-18A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-18A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-18A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-18A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-18A>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

2-171974387-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974387
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974387
    reference: chr 2
allele count: 3
allele frequency: 2.589063794531897e-5
allele num: 115872
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-20A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-20A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-20A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-20A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-20A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-20A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-20A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-20A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-20A>G
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15664
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

2-171974388-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974388
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974388
    reference: chr 2
allele count: 192
allele frequency: 1.681879500341632e-3
allele num: 114158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-21T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-21T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-21T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-21T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-21T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-21T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-21T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-21T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-21T>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 14224
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9479
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 15851
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 2
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

2-171974391-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974391
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974391
    reference: chr 2
allele count: 1
allele frequency: 8.763627440670242e-6
allele num: 114108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-24A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-24A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-24A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-24A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-24A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-24A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-24A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-24A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-24A>G
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23013
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

2-171974395-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974395
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974395
    reference: chr 2
allele count: 1
allele frequency: 8.864619530529749e-6
allele num: 112808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-28G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

2-171974397-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974397
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974397
    reference: chr 2
allele count: 5
allele frequency: 4.455216167088427e-5
allele num: 112228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-30G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-30G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-30G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-30G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-30G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-30G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-30G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-30G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-30G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 14844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11139
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4052
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD

2-171974397-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974397
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974395
    reference: chr 2
allele count: 1
allele frequency: 8.910432334176854e-6
allele num: 112228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-32_140-31delAT
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-32_276-31delAT
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-32_241-31delAT
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-32_-5-31delAT
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-32_-5-31delAT
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-32_140-31delAT
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-32_331-31delAT
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-32_140-31delAT
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-32_140-31delAT
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4052
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: CAT
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum

2-171974401-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974401
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974401
    reference: chr 2
allele count: 15
allele frequency: 1.376677251785092e-4
allele num: 108958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-34A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-34A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-34A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-34A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-34A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-34A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-34A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-34A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-34A>G
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8421
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11251
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4508
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

2-171974402-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974402
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974402
    reference: chr 2
allele count: 1
allele frequency: 9.176500816708572e-6
allele num: 108974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-35T>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-35T>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-35T>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-35T>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-35T>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-35T>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-35T>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-35T>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-35T>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8421
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-171974405-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974405
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974405
    reference: chr 2
allele count: 1
allele frequency: 9.1746486109582e-6
allele num: 108996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-38A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-38A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-38A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-38A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-38A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-38A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-38A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-38A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-38A>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4043
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4517
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

2-171974410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974410
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974410
    reference: chr 2
allele count: 1
allele frequency: 9.391964235400191e-6
allele num: 106474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-43C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-43C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-43C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-43C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-43C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-43C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-43C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-43C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-43C>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9952
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2084
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-171974412-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974412
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974412
    reference: chr 2
allele count: 1
allele frequency: 9.669683607952348e-6
allele num: 103416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-45T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-45T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-45T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-45T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-45T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-45T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-45T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-45T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-45T>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6450
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

2-171974414-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974414
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974414
    reference: chr 2
allele count: 2
allele frequency: 1.935246647185184e-5
allele num: 103346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-47T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-47T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-47T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-47T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-47T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-47T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-47T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-47T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-47T>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9660
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4043
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

2-171974418-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171974418
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171974418
    reference: chr 2
allele count: 2
allele frequency: 1.966143017243074e-5
allele num: 101722
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.140-51A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-5-51A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.140-51A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.140-51A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.276-51A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.140-51A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000466220
  gene symbol: TLK1
  hgvsc: ENST00000466220.1:n.241-51A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000470340
  gene symbol: TLK1
  hgvsc: ENST00000470340.1:n.331-51A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-51A>G
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2883
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5359
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

2-172016751-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016751
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016751
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 4564
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+49C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+49C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42384C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+49C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+49C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+49C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+49C>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13950
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34367
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5581
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6809
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22791
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

2-172016751-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016751
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016751
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 4564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+49C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+49C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+49C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+49C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+49C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42384C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+49C>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34367
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13950
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5581
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6027
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

2-172016756-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016756
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016756
    reference: chr 2
allele count: 2978
allele frequency: 3.645042839657283e-1
allele num: 8170
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+44C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42389C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+44C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+44C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+44C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+44C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+44C>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25490
  bin: 2.5e0
  variant carriers: 1762
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 1.25e1
  variant carriers: 2050
genotype depth: GenotypeDepth
  all individuals: 18390
  bin: 7.5e0
  variant carriers: 6080
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 409
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.75e1
  variant carriers: 474
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 6.75e1
  variant carriers: 142
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 2.75e1
  variant carriers: 325
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 9.75e1
  variant carriers: 2263
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 3.75e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 3.25e1
  variant carriers: 240
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 6.25e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 245
genotype quality: GenotypeQuality
  all individuals: 8789
  bin: 2.25e1
  variant carriers: 1037
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 1.25e1
  variant carriers: 640
num of homozygotes: 415
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

2-172016757-GGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016757
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016755
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 9756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+41_-6+42delTC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+41_275+42delTC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+41_139+42delTC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+41_139+42delTC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+41_139+42delTC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42392_-5-42391delTC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+41_139+42delTC
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19409
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4930
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: GGA
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

2-172016762-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016762
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016762
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 10552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+38C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+38C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+38C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42395C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+38C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+38C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+38C>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22464
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3802
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22504
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-172016767-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016767
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016767
    reference: chr 2
allele count: 12
allele frequency: 1.132075471698113e-3
allele num: 10600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+33G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+33G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+33G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+33G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+33G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+33G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42400G>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23171
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 25058
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17802
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19951
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 2.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-172016769-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016769
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016769
    reference: chr 2
allele count: 5
allele frequency: 2.88550323176362e-4
allele num: 17328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+31G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+31G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+31G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42402G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+31G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+31G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+31G>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22360
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18602
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2695
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-172016770-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016770
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016770
    reference: chr 2
allele count: 2
allele frequency: 1.114206128133705e-4
allele num: 17950
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+30C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+30C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+30C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+30C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42403C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+30C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+30C>G
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27595
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17993
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

2-172016773-A-AGCGGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016773
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016779
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 21006
alternate allele: AGCGGGC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+21_-6+26dupGCCCGC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+21_275+26dupGCCCGC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+21_139+26dupGCCCGC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+21_139+26dupGCCCGC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+21_139+26dupGCCCGC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+21_139+26dupGCCCGC
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30489
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27717
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

2-172016787-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016787
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016787
    reference: chr 2
allele count: 1
allele frequency: 2.445944623813717e-5
allele num: 40884
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+13G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+13G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+13G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42420G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+13G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+13G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+13G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7855
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/2-172016790-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016790
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016790
    reference: chr 2
allele count: 1
allele frequency: 2.075033200531208e-5
allele num: 48192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+10G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+10G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+10G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+10G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+10G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42423G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+10G>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14936
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
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genotype quality: GenotypeQuality
  all individuals: 28100
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 924
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 375
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genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

2-172016791-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016791
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016791
    reference: chr 2
allele count: 1
allele frequency: 1.964559349337943e-5
allele num: 50902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+9C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+9C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+9C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+9C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+9C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42424C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+9C>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5763
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
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genotype quality: GenotypeQuality
  all individuals: 27622
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 5711
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 912
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 176
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genotype quality: GenotypeQuality
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

2-172016792-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016792
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016792
    reference: chr 2
allele count: 1
allele frequency: 1.866159071399246e-5
allele num: 53586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+8C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+8C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+8C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+8C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+8C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42425C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+8C>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19397
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27042
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
hgvs: c.139+8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

2-172016794-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016794
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016794
    reference: chr 2
allele count: 1
allele frequency: 1.702881275117499e-5
allele num: 58724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.139+6C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.139+6C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.139+6C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-6+6C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.275+6C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.139+6C>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42427C>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 7.5e0
  variant carriers: 0
hgvs: c.139+6C>A
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

2-172016801-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016801
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016801
    reference: chr 2
allele count: 1
allele frequency: 1.400207230670139e-5
allele num: 71418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42434A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.138A>C
  hgvsp: ENSP00000354089.3:p.Glu46Asp
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.274A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.138A>C
  hgvsp: ENSP00000387313.2:p.Glu46Asp
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.138A>C
  hgvsp: ENSP00000411099.2:p.Glu46Asp
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.138A>C
  hgvsp: ENSP00000352810.3:p.Glu46Asp
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-7A>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu46Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

2-172016806-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016806
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016806
    reference: chr 2
allele count: 1
allele frequency: 1.277498147627686e-5
allele num: 78278
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.133A>G
  hgvsp: ENSP00000411099.2:p.Arg45Gly
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.133A>G
  hgvsp: ENSP00000354089.3:p.Arg45Gly
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-12A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.133A>G
  hgvsp: ENSP00000352810.3:p.Arg45Gly
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.133A>G
  hgvsp: ENSP00000387313.2:p.Arg45Gly
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.269A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42439A>G
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18752
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg45Gly
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-172016809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016809
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016809
    reference: chr 2
allele count: 1
allele frequency: 1.222972311906858e-5
allele num: 81768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42442C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.130C>T
  hgvsp: ENSP00000352810.3:p.Pro44Ser
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.130C>T
  hgvsp: ENSP00000411099.2:p.Pro44Ser
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.130C>T
  hgvsp: ENSP00000354089.3:p.Pro44Ser
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.130C>T
  hgvsp: ENSP00000387313.2:p.Pro44Ser
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-15C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.266C>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro44Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

2-172016811-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016811
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016811
    reference: chr 2
allele count: 2
allele frequency: 2.354048964218456e-5
allele num: 84960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.128G>C
  hgvsp: ENSP00000352810.3:p.Arg43Thr
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.128G>C
  hgvsp: ENSP00000354089.3:p.Arg43Thr
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.128G>C
  hgvsp: ENSP00000387313.2:p.Arg43Thr
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.128G>C
  hgvsp: ENSP00000411099.2:p.Arg43Thr
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42444G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-17G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.264G>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg43Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS

2-172016813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016813
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016813
    reference: chr 2
allele count: 1
allele frequency: 1.13954919433872e-5
allele num: 87754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-19G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.126G>A
  hgvsp: ENST00000431350.2:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42446G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.126G>A
  hgvsp: ENST00000359766.3:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.126G>A
  hgvsp: ENST00000409443.2:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.126G>A
  hgvsp: ENST00000360843.3:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.262G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4519
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly42Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

2-172016815-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016815
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016815
    reference: chr 2
allele count: 1
allele frequency: 1.113982710988326e-5
allele num: 89768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.124G>C
  hgvsp: ENSP00000352810.3:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42448G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-21G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.124G>C
  hgvsp: ENSP00000354089.3:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.260G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.124G>C
  hgvsp: ENSP00000387313.2:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.124G>C
  hgvsp: ENSP00000411099.2:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly42Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

2-172016834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016834
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016834
    reference: chr 2
allele count: 1
allele frequency: 9.209459957268105e-6
allele num: 108584
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.105G>A
  hgvsp: ENST00000431350.2:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.105G>A
  hgvsp: ENST00000409443.2:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42467G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.105G>A
  hgvsp: ENST00000359766.3:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.105G>A
  hgvsp: ENST00000360843.3:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.241G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-40G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5862
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu35Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-172016835-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016835
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016835
    reference: chr 2
allele count: 1
allele frequency: 9.154491193379472e-6
allele num: 109236
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.240T>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.104T>G
  hgvsp: ENSP00000387313.2:p.Leu35Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42468T>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.104T>G
  hgvsp: ENSP00000354089.3:p.Leu35Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-41T>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.104T>G
  hgvsp: ENSP00000411099.2:p.Leu35Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.104T>G
  hgvsp: ENSP00000352810.3:p.Leu35Arg
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5643
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu35Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

2-172016836-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016836
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016836
    reference: chr 2
allele count: 2
allele frequency: 1.826150474799123e-5
allele num: 109520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.103C>T
  hgvsp: ENST00000360843.3:c.103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42469C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-42C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.103C>T
  hgvsp: ENST00000431350.2:c.103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.103C>T
  hgvsp: ENST00000359766.3:c.103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.103C>T
  hgvsp: ENST00000409443.2:c.103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.239C>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41076
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5480
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6161
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu35Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

2-172016836-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016836
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016836
    reference: chr 2
allele count: 1
allele frequency: 9.130752373995617e-6
allele num: 109520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42469C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.103C>G
  hgvsp: ENSP00000352810.3:p.Leu35Val
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-42C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.103C>G
  hgvsp: ENSP00000411099.2:p.Leu35Val
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.103C>G
  hgvsp: ENSP00000387313.2:p.Leu35Val
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.103C>G
  hgvsp: ENSP00000354089.3:p.Leu35Val
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.239C>G
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5480
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu35Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-172016843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016843
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016843
    reference: chr 2
allele count: 4
allele frequency: 3.570280981113214e-5
allele num: 112036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.96G>A
  hgvsp: ENST00000360843.3:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.96G>A
  hgvsp: ENST00000431350.2:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.232G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.96G>A
  hgvsp: ENST00000359766.3:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42476G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-49G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.96G>A
  hgvsp: ENST00000409443.2:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg32Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

2-172016846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016846
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016846
    reference: chr 2
allele count: 4
allele frequency: 3.537256150404131e-5
allele num: 113082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.229C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.93C>T
  hgvsp: ENST00000360843.3:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.93C>T
  hgvsp: ENST00000431350.2:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-52C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42479C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.93C>T
  hgvsp: ENST00000409443.2:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.93C>T
  hgvsp: ENST00000359766.3:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala31Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

2-172016846-G-GGCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016846
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016849
    reference: chr 2
allele count: 9
allele frequency: 7.958826338409296e-5
allele num: 113082
alternate allele: GGCC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.226_228dupGGC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-55_-53dupGGC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.90_92dupGGC
  hgvsp: ENSP00000387313.2:p.Ala31dup
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.90_92dupGGC
  hgvsp: ENSP00000354089.3:p.Ala31dup
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.90_92dupGGC
  hgvsp: ENSP00000411099.2:p.Ala31dup
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.90_92dupGGC
  hgvsp: ENSP00000352810.3:p.Ala31dup
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42482_-5-42480dupGGC
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39399
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala31dup
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

2-172016846-GGCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016846
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016843
    reference: chr 2
allele count: 3
allele frequency: 2.652942112803099e-5
allele num: 113082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.90_92delGGC
  hgvsp: ENSP00000354089.3:p.Ala31del
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.90_92delGGC
  hgvsp: ENSP00000411099.2:p.Ala31del
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.226_228delGGC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-55_-53delGGC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42482_-5-42480delGGC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.90_92delGGC
  hgvsp: ENSP00000352810.3:p.Ala31del
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.90_92delGGC
  hgvsp: ENSP00000387313.2:p.Ala31del
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala31del
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: GGCC
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-172016853-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016853
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016853
    reference: chr 2
allele count: 1
allele frequency: 8.665361085596437e-6
allele num: 115402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42486C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.86C>T
  hgvsp: ENSP00000387313.2:p.Ala29Val
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-59C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.86C>T
  hgvsp: ENSP00000411099.2:p.Ala29Val
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.86C>T
  hgvsp: ENSP00000352810.3:p.Ala29Val
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.222C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.86C>T
  hgvsp: ENSP00000354089.3:p.Ala29Val
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40479
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala29Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

2-172016859-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016859
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016859
    reference: chr 2
allele count: 1
allele frequency: 8.535773426430169e-6
allele num: 117154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42492C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.80C>T
  hgvsp: ENSP00000387313.2:p.Ser27Leu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.80C>T
  hgvsp: ENSP00000411099.2:p.Ser27Leu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.80C>T
  hgvsp: ENSP00000354089.3:p.Ser27Leu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-65C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.80C>T
  hgvsp: ENSP00000352810.3:p.Ser27Leu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.216C>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41565
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser27Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-172016862-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016862
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016862
    reference: chr 2
allele count: 8
allele frequency: 6.79532481652623e-5
allele num: 117728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.77G>C
  hgvsp: ENSP00000387313.2:p.Gly26Ala
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.77G>C
  hgvsp: ENSP00000411099.2:p.Gly26Ala
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42495G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.213G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.77G>C
  hgvsp: ENSP00000354089.3:p.Gly26Ala
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.77G>C
  hgvsp: ENSP00000352810.3:p.Gly26Ala
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-68G>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42226
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly26Ala
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

2-172016871-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016871
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016871
    reference: chr 2
allele count: 1
allele frequency: 8.403643819960336e-6
allele num: 118996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.68C>G
  hgvsp: ENSP00000354089.3:p.Pro23Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.68C>G
  hgvsp: ENSP00000352810.3:p.Pro23Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.68C>G
  hgvsp: ENSP00000387313.2:p.Pro23Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.68C>G
  hgvsp: ENSP00000411099.2:p.Pro23Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-77C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.204C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42504C>G
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro23Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

2-172016876-CGTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016876
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016873
    reference: chr 2
allele count: 1
allele frequency: 8.377454594196099e-6
allele num: 119368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.60_62delCAC
  hgvsp: ENSP00000387313.2:p.Thr21del
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.60_62delCAC
  hgvsp: ENSP00000411099.2:p.Thr21del
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42512_-5-42510delCAC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-85_-83delCAC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.196_198delCAC
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.60_62delCAC
  hgvsp: ENSP00000354089.3:p.Thr21del
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.60_62delCAC
  hgvsp: ENSP00000352810.3:p.Thr21del
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7364
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr21del
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: CGTG
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-172016892-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016892
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016892
    reference: chr 2
allele count: 1
allele frequency: 8.332500083325001e-6
allele num: 120012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.47G>C
  hgvsp: ENSP00000354089.3:p.Trp16Ser
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.47G>C
  hgvsp: ENSP00000352810.3:p.Trp16Ser
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.47G>C
  hgvsp: ENSP00000411099.2:p.Trp16Ser
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-98G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.47G>C
  hgvsp: ENSP00000387313.2:p.Trp16Ser
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42525G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.183G>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Trp16Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

2-172016897-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016897
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016897
    reference: chr 2
allele count: 1
allele frequency: 8.326533331112925e-6
allele num: 120098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.42A>G
  hgvsp: ENST00000409443.2:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.42A>G
  hgvsp: ENST00000359766.3:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-103A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.42A>G
  hgvsp: ENST00000360843.3:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.178A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42530A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.42A>G
  hgvsp: ENST00000431350.2:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro14Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

2-172016901-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016901
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016901
    reference: chr 2
allele count: 1
allele frequency: 8.320159747067144e-6
allele num: 120190
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.38C>G
  hgvsp: ENSP00000411099.2:p.Pro13Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.38C>G
  hgvsp: ENSP00000352810.3:p.Pro13Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42534C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.174C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.38C>G
  hgvsp: ENSP00000354089.3:p.Pro13Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-107C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.38C>G
  hgvsp: ENSP00000387313.2:p.Pro13Arg
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43549
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7458
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro13Arg
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-172016916-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016916
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016916
    reference: chr 2
allele count: 1
allele frequency: 8.305647840531562e-6
allele num: 120400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42549G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.23G>A
  hgvsp: ENSP00000411099.2:p.Gly8Glu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.23G>A
  hgvsp: ENSP00000352810.3:p.Gly8Glu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-122G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.23G>A
  hgvsp: ENSP00000387313.2:p.Gly8Glu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.23G>A
  hgvsp: ENSP00000354089.3:p.Gly8Glu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.159G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7472
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly8Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

2-172016919-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016919
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016919
    reference: chr 2
allele count: 1
allele frequency: 8.303716743614441e-6
allele num: 120428
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.20G>A
  hgvsp: ENSP00000411099.2:p.Ser7Asn
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.156G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-125G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.20G>A
  hgvsp: ENSP00000387313.2:p.Ser7Asn
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.20G>A
  hgvsp: ENSP00000354089.3:p.Ser7Asn
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.20G>A
  hgvsp: ENSP00000352810.3:p.Ser7Asn
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42552G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7476
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43666
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser7Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-172016922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016922
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016922
    reference: chr 2
allele count: 1
allele frequency: 8.302889405513118e-6
allele num: 120440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-128G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.17G>A
  hgvsp: ENSP00000387313.2:p.Ser6Asn
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.17G>A
  hgvsp: ENSP00000352810.3:p.Ser6Asn
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.17G>A
  hgvsp: ENSP00000354089.3:p.Ser6Asn
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.17G>A
  hgvsp: ENSP00000411099.2:p.Ser6Asn
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.153G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42555G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11093
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser6Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum

2-172016926-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016926
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016926
    reference: chr 2
allele count: 1
allele frequency: 8.302613662781043e-6
allele num: 120444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-132A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.149A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.13A>G
  hgvsp: ENSP00000387313.2:p.Ser5Gly
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.13A>G
  hgvsp: ENSP00000352810.3:p.Ser5Gly
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.13A>G
  hgvsp: ENSP00000411099.2:p.Ser5Gly
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.13A>G
  hgvsp: ENSP00000354089.3:p.Ser5Gly
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42559A>G
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser5Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

2-172016928-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016928
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016928
    reference: chr 2
allele count: 1
allele frequency: 8.303027283747654e-6
allele num: 120438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42561A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.11A>G
  hgvsp: ENSP00000354089.3:p.Gln4Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.147A>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.11A>G
  hgvsp: ENSP00000411099.2:p.Gln4Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.11A>G
  hgvsp: ENSP00000387313.2:p.Gln4Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.11A>G
  hgvsp: ENSP00000352810.3:p.Gln4Arg
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-134A>G
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln4Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

2-172016929-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016929
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016929
    reference: chr 2
allele count: 9
allele frequency: 7.472104144527099e-5
allele num: 120448
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.146C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.10C>G
  hgvsp: ENSP00000387313.2:p.Gln4Glu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.10C>G
  hgvsp: ENSP00000411099.2:p.Gln4Glu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.10C>G
  hgvsp: ENSP00000354089.3:p.Gln4Glu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42562C>G
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.10C>G
  hgvsp: ENSP00000352810.3:p.Gln4Glu
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-135C>G
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43626
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln4Glu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

2-172016932-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016932
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016932
    reference: chr 2
allele count: 6
allele frequency: 4.981733643307871e-5
allele num: 120440
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.7G>A
  hgvsp: ENSP00000411099.2:p.Val3Ile
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.143G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42565G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-138G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.7G>A
  hgvsp: ENSP00000387313.2:p.Val3Ile
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.7G>A
  hgvsp: ENSP00000354089.3:p.Val3Ile
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.7G>A
  hgvsp: ENSP00000352810.3:p.Val3Ile
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43018
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val3Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS

2-172016935-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016935
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016935
    reference: chr 2
allele count: 1
allele frequency: 8.304268393954492e-6
allele num: 120420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.4A>T
  hgvsp: ENSP00000354089.3:p.Ser2Cys
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42568A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-141A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.4A>T
  hgvsp: ENSP00000387313.2:p.Ser2Cys
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.140A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.4A>T
  hgvsp: ENSP00000352810.3:p.Ser2Cys
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.4A>T
  hgvsp: ENSP00000411099.2:p.Ser2Cys
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser2Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS

2-172016939-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016939
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016939
    reference: chr 2
allele count: 1
allele frequency: 8.304958059961797e-6
allele num: 120410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-1G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.136G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-1G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-1G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-145G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-1G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42572G>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7450
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

2-172016941-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016941
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016941
    reference: chr 2
allele count: 1
allele frequency: 8.306613725848521e-6
allele num: 120386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-3T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-147T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-3T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-3T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42574T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-3T>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.134T>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

2-172016954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016954
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016954
    reference: chr 2
allele count: 2
allele frequency: 1.664198106142555e-5
allele num: 120178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-16C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-16C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-16C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-16C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-160C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.121C>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42587C>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7405
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/2-172016957-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016957
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016957
    reference: chr 2
allele count: 1
allele frequency: 8.333750020834376e-6
allele num: 119994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-19G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-163G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-19G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42590G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-19G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-19G>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.118G>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

2-172016957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016957
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016957
    reference: chr 2
allele count: 1
allele frequency: 8.333750020834376e-6
allele num: 119994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-19G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-19G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-19G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42590G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-163G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.118G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-19G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41928
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41927
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-172016962-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016962
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016961
    reference: chr 2
allele count: 1
allele frequency: 8.34125752798492e-6
allele num: 119886
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-25delA
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-25delA
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42596delA
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-169delA
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-25delA
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-25delA
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.112delA
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: CT
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

2-172016963-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016963
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016963
    reference: chr 2
allele count: 1
allele frequency: 8.373666493610892e-6
allele num: 119422
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-25A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-25A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-25A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42596A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-169A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-25A>T
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.112A>T
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7170
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-172016963-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016963
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016963
    reference: chr 2
allele count: 1
allele frequency: 8.373666493610892e-6
allele num: 119422
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-25A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-25A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-169A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.112A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-25A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-25A>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42596A>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41108
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

2-172016963-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016963
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016964
    reference: chr 2
allele count: 8
allele frequency: 6.698933194888714e-5
allele num: 119422
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-26dupG
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.111dupG
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-26dupG
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-26dupG
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-26dupG
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42597dupG
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-170dupG
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41411
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10528
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41108
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

2-172016964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016964
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016964
    reference: chr 2
allele count: 15
allele frequency: 1.254285475374195e-4
allele num: 119590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42597G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.111G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-26G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-170G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-26G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-26G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-26G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10636
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

2-172016966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016966
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016966
    reference: chr 2
allele count: 1
allele frequency: 8.351009637065121e-6
allele num: 119746
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42599G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-172G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-28G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.109G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

2-172016967-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016967
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016967
    reference: chr 2
allele count: 1
allele frequency: 8.350451759440186e-6
allele num: 119754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-173G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-29G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.108G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-29G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-29G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42600G>A
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-29G>A
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7288
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

2-172016968-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172016968
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 172016968
    reference: chr 2
allele count: 4
allele frequency: 3.340961862920335e-5
allele num: 119726
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000387313
  ensembl transcript: ENST00000409443
  gene symbol: TLK1
  hgvsc: ENST00000409443.2:c.-30G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000352810
  ensembl transcript: ENST00000359766
  gene symbol: TLK1
  hgvsc: ENST00000359766.3:c.-30G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000402165
  ensembl transcript: ENST00000442919
  gene symbol: TLK1
  hgvsc: ENST00000442919.2:c.-174G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000354089
  ensembl transcript: ENST00000360843
  gene symbol: TLK1
  hgvsc: ENST00000360843.3:c.-30G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198586
  ensembl transcript: ENST00000413010
  gene symbol: TLK1
  hgvsc: ENST00000413010.1:n.107G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000411099
  ensembl transcript: ENST00000431350
  gene symbol: TLK1
  hgvsc: ENST00000431350.2:c.-30G>C
  variant of: http://identifiers.org/hgnc/11841
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198586
  ensembl protein: ENSP00000428113
  ensembl transcript: ENST00000521943
  gene symbol: TLK1
  hgvsc: ENST00000521943.1:c.-5-42601G>C
  variant of: http://identifiers.org/hgnc/11841
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/2-172016969-C-A
type: Variant
location: Region
allele count: 3
allele frequency: 2.508403150554357e-5
allele num: 119598
alternate allele: A
canonical: true
consequence: 5' UTR
filter: PASS
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 977
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6905
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25994
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9857
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4141
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5625e-5
allele num: 64000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: -2.075e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

FS
type: SiteQuality
SIO_000300: 3.551e0

MQRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

DP
type: SiteQuality
SIO_000300: 1.84606e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

GenotypeQuality
all individuals: 7859
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4138
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9747
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.956436676666232e-4
allele num: 15334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63898
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.196e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQRankSum
type: SiteQuality
SIO_000300: -7.91e-1

DP
type: SiteQuality
SIO_000300: 1.817713e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.67e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

QD
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SIO_000300: 1.246e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 950
bin: 9.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.639224538573895e-5
allele num: 15062
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.416856492027335e-3
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 28
allele frequency: 2.464788732394366e-3
allele num: 11360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
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African
type: Population
allele count: 159
allele frequency: 1.682895850973751e-2
allele num: 9448
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587906504065041e-5
allele num: 62976
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

FS
type: SiteQuality
SIO_000300: 1.012e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

QD
type: SiteQuality
SIO_000300: 1.803e1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.732899e6

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588259585146596e-5
allele num: 62962
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9438
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.927e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

DP
type: SiteQuality
SIO_000300: 1.72553e6

QD
type: SiteQuality
SIO_000300: 1.426e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7802
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.073883161512027e-4
allele num: 9312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.634e0

FS
type: SiteQuality
SIO_000300: 6.301e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.575e1

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

DP
type: SiteQuality
SIO_000300: 1.676934e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.455569542622898e-5
allele num: 61962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.815703380588877e-5
allele num: 14672
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.342e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.652682e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.287e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: -9.68e-1

QD
type: SiteQuality
SIO_000300: 8.960000000000001e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 714
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14672
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.613892385655725e-5
allele num: 61962
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: -9.68e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
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South Asian
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allele frequency: 3.527585720333004e-4
allele num: 14174
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.355013550135501e-3
allele num: 7380
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.35464643727987e-4
allele num: 7382
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11214
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60216
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African
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Other
type: Population
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6406
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.660853678790898e-5
allele num: 60210
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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FS
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MQ
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QD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4043
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5114
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.005763688760806e-5
allele num: 11104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13722
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.243e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: -8.47e-2

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

DP
type: SiteQuality
SIO_000300: 1.495913e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

GenotypeQuality
all individuals: 1522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4043
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.747335313646689e-5
allele num: 57230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

DP
type: SiteQuality
SIO_000300: 1.459604e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.021e0

MQ
type: SiteQuality
SIO_000300: 5.636e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e0

QD
type: SiteQuality
SIO_000300: 1.782e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.495403544339194e-5
allele num: 57218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

DP
type: SiteQuality
SIO_000300: 1.457561e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

FS
type: SiteQuality
SIO_000300: 8.355e0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e-1

QD
type: SiteQuality
SIO_000300: 1.519e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4043
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4894
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.778979577314453e-5
allele num: 56212
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.187798603454613e-5
allele num: 10884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 1.374e0

QD
type: SiteQuality
SIO_000300: 1.72e1

MQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

DP
type: SiteQuality
SIO_000300: 1.449401e6

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6027
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 6381
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1544
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.56e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 2.08166e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 1.929e1

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

GenotypeQuality
all individuals: 6381
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6809
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22791
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.929e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.56e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 2.08166e5

GenotypeQuality
all individuals: 17954
bin: 7.5e0
variant carriers: 722

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 445

GenotypeQuality
all individuals: 571
bin: 5.25e1
variant carriers: 565

GenotypeQuality
all individuals: 6918
bin: 2.5e0
variant carriers: 33

GenotypeQuality
all individuals: 337
bin: 4.25e1
variant carriers: 280

GenotypeQuality
all individuals: 443
bin: 7.75e1
variant carriers: 438

GenotypeQuality
all individuals: 334
bin: 5.75e1
variant carriers: 328

GenotypeQuality
all individuals: 555
bin: 8.25e1
variant carriers: 550

GenotypeQuality
all individuals: 252
bin: 7.25e1
variant carriers: 246

GenotypeQuality
all individuals: 2576
bin: 1.75e1
variant carriers: 1170

African
type: Population
allele count: 236
allele frequency: 3.017902813299232e-1
allele num: 782
num of homozygotes: 22

Latino
type: Population
allele count: 59
allele frequency: 3.072916666666667e-1
allele num: 192
num of homozygotes: 5

South Asian
type: Population
allele count: 606
allele frequency: 2.710196779964222e-1
allele num: 2236
num of homozygotes: 71

East Asian
type: Population
allele count: 51
allele frequency: 1.094420600858369e-1
allele num: 466
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 83
allele frequency: 3.842592592592592e-1
allele num: 216
num of homozygotes: 9

European (Non-Finnish)
type: Population
allele count: 1916
allele frequency: 4.548907882241215e-1
allele num: 4212
num of homozygotes: 304

Other
type: Population
allele count: 27
allele frequency: 4.090909090909091e-1
allele num: 66
num of homozygotes: 3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.237e-1

DP
type: SiteQuality
SIO_000300: 2.63785e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 1.971e1

GenotypeQuality
all individuals: 285
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5454
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

QD
type: SiteQuality
SIO_000300: 1.671e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.94e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.153e1

DP
type: SiteQuality
SIO_000300: 2.74911e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
all individuals: 667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1921
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17481
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.03504e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.202e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.72e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 264
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3444
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 652
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6043
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 3.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 17
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.188183807439825e-3
allele num: 914
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.449275362318841e-3
allele num: 690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.071811361200429e-3
allele num: 5598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.90625e-3
allele num: 256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 8.264462809917356e-3
allele num: 242
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.13e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 3.48261e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.7e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1329
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 2.5e0
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GenotypeQuality
all individuals: 97
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1520
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 3.816793893129771e-3
allele num: 1310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.301e-1

DP
type: SiteQuality
SIO_000300: 3.79084e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.960000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.205e0

FS
type: SiteQuality
SIO_000300: 3.233e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

GenotypeQuality
all individuals: 351
bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.188183807439825e-4
allele num: 9140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.89941e5

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.586e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15452
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.41e-1

QD
type: SiteQuality
SIO_000300: 7.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: -2.219e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 4.38563e5

MQ
type: SiteQuality
SIO_000300: 4.547e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1729
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.486750348675035e-4
allele num: 2868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1552
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.78e-1

QD
type: SiteQuality
SIO_000300: 3.47e0

VQSLOD
type: SiteQuality
SIO_000300: -3.135e0

MQ
type: SiteQuality
SIO_000300: 5.82e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

DP
type: SiteQuality
SIO_000300: 6.47947e5

GenotypeQuality
all individuals: 6174
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 346
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variant carriers: 0

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
all individuals: 149
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variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26368
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.685284640171858e-4
allele num: 3724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.61e-2

DP
type: SiteQuality
SIO_000300: 7.19363e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.529e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 127
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variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.569898614879337e-5
allele num: 28012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.523e0

QD
type: SiteQuality
SIO_000300: 7.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.196e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.41517e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2488
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.379520108144643e-5
allele num: 29590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2180
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 7.62205e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.511e0

MQRankSum
type: SiteQuality
SIO_000300: 9.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

FS
type: SiteQuality
SIO_000300: 5.643e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.133e0

VQSLOD
type: SiteQuality
SIO_000300: -2.477e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 512
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2486
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South Asian
type: Population
allele count: 1
allele frequency: 8.574858514834505e-5
allele num: 11662
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.323e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

DP
type: SiteQuality
SIO_000300: 8.09729e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.436e0

QD
type: SiteQuality
SIO_000300: 1.588e1

GenotypeQuality
all individuals: 195
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 766
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 181
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GenotypeQuality
all individuals: 389
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.526273241713824e-5
allele num: 39584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5672
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3204
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.16e-1

QD
type: SiteQuality
SIO_000300: 1.112e1

DP
type: SiteQuality
SIO_000300: 9.19322e5

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.310109037146553e-5
allele num: 43288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5284
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.185e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.84147e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.216999955660001e-5
allele num: 45106
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.463e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.699e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

QD
type: SiteQuality
SIO_000300: 6.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.016392e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.274234911950761e-5
allele num: 46792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14106
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5790
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.014e1

MQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

DP
type: SiteQuality
SIO_000300: 1.044407e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.885e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.074000331840053e-5
allele num: 48216
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14390
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.063e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

DP
type: SiteQuality
SIO_000300: 1.069093e6

FS
type: SiteQuality
SIO_000300: 3.072e0

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.277e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.028973745079739e-5
allele num: 49286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7068
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.174e0

MQRankSum
type: SiteQuality
SIO_000300: 9.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 2.143e1

DP
type: SiteQuality
SIO_000300: 1.092305e6

VQSLOD
type: SiteQuality
SIO_000300: -1.521e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

FS
type: SiteQuality
SIO_000300: 1.4551e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
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African
type: Population
allele count: 1
allele frequency: 1.137656427758817e-4
allele num: 8790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10492
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15914
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

DP
type: SiteQuality
SIO_000300: 1.265841e6

MQRankSum
type: SiteQuality
SIO_000300: -1.063e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.162e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.339e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.896e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.683445001851789e-5
allele num: 59402
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Latino
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5672
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.255473539346929e-5
allele num: 15986
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 10566
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59548
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East Asian
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allele count: 1
allele frequency: 1.24285359184688e-4
allele num: 8046
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5710
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5710
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59548
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South Asian
type: Population
allele count: 1
allele frequency: 6.255473539346929e-5
allele num: 15986
num of homozygotes: 0

Latino
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num of homozygotes: 0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.31e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 554
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.556517178075007e-5
allele num: 61008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.137e0

FS
type: SiteQuality
SIO_000300: 5.539e0

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

DP
type: SiteQuality
SIO_000300: 1.304019e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.43e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

GenotypeQuality
all individuals: 39399
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 384
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.623188405797101e-4
allele num: 11040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

QD
type: SiteQuality
SIO_000300: 1.444e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

FS
type: SiteQuality
SIO_000300: 3.056e0

DP
type: SiteQuality
SIO_000300: 1.319944e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

GenotypeQuality
all individuals: 2380
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.057971014492754e-5
allele num: 11040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.116356080773976e-5
allele num: 61604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.178649237472767e-4
allele num: 9180
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.186587478346944e-5
allele num: 16164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

FS
type: SiteQuality
SIO_000300: 3.056e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

QD
type: SiteQuality
SIO_000300: 1.444e1

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

DP
type: SiteQuality
SIO_000300: 1.319944e6

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

GenotypeQuality
all individuals: 345
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 127
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.089324618736383e-4
allele num: 9180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.057971014492754e-5
allele num: 11040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.623271216154795e-5
allele num: 61604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.851e1

FS
type: SiteQuality
SIO_000300: 3.056e0

QD
type: SiteQuality
SIO_000300: 1.444e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

DP
type: SiteQuality
SIO_000300: 1.319944e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 705
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.187648456057007e-3
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.161e1

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.352923e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1878
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175640724194686e-4
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64006
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.689e0

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.83e-1

DP
type: SiteQuality
SIO_000300: 1.375166e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 8
allele frequency: 8.216926869350862e-4
allele num: 9736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64348
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

FS
type: SiteQuality
SIO_000300: 2.944e0

DP
type: SiteQuality
SIO_000300: 1.382208e6

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.65e-1

QD
type: SiteQuality
SIO_000300: 1.483e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.043e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.398672e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.077e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.897e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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African
type: Population
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allele num: 10064
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.716e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.178e1

FS
type: SiteQuality
SIO_000300: 2.623e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.36e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2397
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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South Asian
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allele num: 16496
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Latino
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Other
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ClippingRankSum
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QD
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FS
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11512
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South Asian
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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DP
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VQSLOD
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11532
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 65974
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Other
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South Asian
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FS
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ClippingRankSum
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QD
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BaseQRankSum
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.515472979116782e-5
allele num: 65986
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16500
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African
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Other
type: Population
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num of homozygotes: 0

DP
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 65988
num of homozygotes: 0

Latino
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European (Finnish)
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African
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South Asian
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East Asian
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Other
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FS
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BaseQRankSum
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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allele num: 6608
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African
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South Asian
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Other
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East Asian
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Latino
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FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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MQRankSum
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FS
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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MQRankSum
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65962
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
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South Asian
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allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.415e0

MQ
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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SIO_000300: -2.6e-2

BaseQRankSum
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QD
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SIO_000300: 1.569e1

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
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SIO_000300: 1.414757e6

FS
type: SiteQuality
SIO_000300: 3.25e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.516162290011523e-5
allele num: 65956
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16500
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Latino
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allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.792e1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.24e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.414173e6

VQSLOD
type: SiteQuality
SIO_000300: -1.725e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.516530178950561e-5
allele num: 65940
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10286
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Other
type: Population
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.002e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e0

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

MQRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.75e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.519941634241245e-5
allele num: 65792
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.104e0

DP
type: SiteQuality
SIO_000300: 1.405596e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.847e0

FS
type: SiteQuality
SIO_000300: 2.505e0

MQRankSum
type: SiteQuality
SIO_000300: -8.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 6.76e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.819324430479184e-5
allele num: 10184
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65682
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 1.399309e6

FS
type: SiteQuality
SIO_000300: 1.1871e1

QD
type: SiteQuality
SIO_000300: 1.234e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.286e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522487134983709e-5
allele num: 65682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
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East Asian
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allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.399309e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 1.524343770007012e-5
allele num: 65602
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Latino
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Other
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allele num: 894
num of homozygotes: 0

FS
type: SiteQuality
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11512
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East Asian
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African
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South Asian
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.530081400330498e-5
allele num: 65356
num of homozygotes: 0

Other
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European (Finnish)
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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QD
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InbreedingCoeff
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MQ
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DP
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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allele num: 65356
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Other
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.402383e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.275e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

FS
type: SiteQuality
SIO_000300: 2.197e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.29e0

GenotypeQuality
all individuals: 552
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41486
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2753
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.145217593670003e-4
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.850836769342711e-4
allele num: 16492
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.402295e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.323e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

FS
type: SiteQuality
SIO_000300: 1.879e0

QD
type: SiteQuality
SIO_000300: 8.68e0

GenotypeQuality
all individuals: 340
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41439
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2347
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.496e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.444e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.75e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

VQSLOD
type: SiteQuality
SIO_000300: -1.167e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 1.397542e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2762
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.442e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.397505e6

VQSLOD
type: SiteQuality
SIO_000300: -5.225e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.91e-1

QD
type: SiteQuality
SIO_000300: 8.4e0

GenotypeQuality
all individuals: 1646
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41353
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526857422053929e-5
allele num: 65494
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.326122354035822e-4
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.881422924901186e-5
allele num: 10120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.623e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e0

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.39602e6

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.108e1