2-74763787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763787
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763787
    reference: chr 2
allele count: 1
allele frequency: 8.39390937935434e-6
allele num: 119134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.912+49C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-189C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-189C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-189C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-189C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-189C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.912+49C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.912+49C>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

2-74763789-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763789
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763789
    reference: chr 2
allele count: 1
allele frequency: 8.388980235562565e-6
allele num: 119204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.912+47C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.912+47C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.912+47C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-191C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-191C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-191C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-191C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-191C>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39505
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-74763790-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763790
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763790
    reference: chr 2
allele count: 1
allele frequency: 8.387572971884856e-6
allele num: 119224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.912+46C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.912+46C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-192C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-192C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-192C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-192C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.912+46C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-192C>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 27399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8521
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

2-74763795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763795
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763795
    reference: chr 2
allele count: 1
allele frequency: 8.386447500838645e-6
allele num: 119240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.912+41G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.912+41G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-197G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-197G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-197G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-197G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.912+41G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-197G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14676
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40250
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8530
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

2-74763805-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763805
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763805
    reference: chr 2
allele count: 1215
allele frequency: 1.016753418467255e-2
allele num: 119498
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.912+31A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-207A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-207A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-207A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.912+31A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-207A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.912+31A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-207A>G
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14632
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 27777
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 16
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

2-74763805-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763805
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763805
    reference: chr 2
allele count: 3
allele frequency: 2.510502267820382e-5
allele num: 119498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-207A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-207A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-207A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-207A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.912+31A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.912+31A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.912+31A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-207A>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-74763811-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763811
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763811
    reference: chr 2
allele count: 1
allele frequency: 8.343206127250579e-6
allele num: 119858
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-213T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-213T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.912+25T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.912+25T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-213T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-213T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.912+25T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-213T>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

2-74763817-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763817
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763817
    reference: chr 2
allele count: 1
allele frequency: 8.320436656515735e-6
allele num: 120186
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.912+19A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-219A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.912+19A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-219A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-219A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.912+19A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-219A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-219A>G
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8883
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

2-74763820-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763820
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763820
    reference: chr 2
allele count: 4
allele frequency: 3.32408130702877e-5
allele num: 120334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-222A>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.912+16A>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.912+16A>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.912+16A>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-222A>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-222A>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-222A>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-222A>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8895
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-74763837-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763837
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763838
    reference: chr 2
allele count: 1
allele frequency: 8.258183860205463e-6
allele num: 121092
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.910dupG
  hgvsp: ENSP00000386696.1:p.Glu304GlyfsTer30
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-240dupG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.910dupG
  hgvsp: ENSP00000387103.1:p.Glu304GlyfsTer30
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-240dupG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.910dupG
  hgvsp: ENSP00000264094.3:p.Glu304GlyfsTer30
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-240dupG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-240dupG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-240dupG
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu304GlyfsTer30
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

2-74763839-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763839
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763839
    reference: chr 2
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-241G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-241G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.909G>A
  hgvsp: ENST00000409249.1:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-241G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.909G>A
  hgvsp: ENST00000264094.3:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-241G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-241G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.909G>A
  hgvsp: ENST00000409549.1:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.909G>A
  hgvsp: ENST00000413469.1:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly303Gly
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

2-74763841-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763841
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763839
    reference: chr 2
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.905_906delAG
  hgvsp: ENSP00000264094.3:p.Gln302ArgfsTer31
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.905_906delAG
  hgvsp: ENSP00000398260.1:p.Gln302ArgfsTer?
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-245_296-244delAG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-245_478-244delAG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.905_906delAG
  hgvsp: ENSP00000387103.1:p.Gln302ArgfsTer31
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-245_478-244delAG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.905_906delAG
  hgvsp: ENSP00000386696.1:p.Gln302ArgfsTer31
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-245_209-244delAG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-245_92-244delAG
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln302ArgfsTer31
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: CCT
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

2-74763851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763851
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763851
    reference: chr 2
allele count: 5
allele frequency: 4.122011541632317e-5
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.897G>A
  hgvsp: ENST00000409549.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.897G>A
  hgvsp: ENST00000413469.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-253G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-253G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-253G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-253G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.897G>A
  hgvsp: ENST00000264094.3:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.897G>A
  hgvsp: ENST00000409249.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-253G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser299Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

2-74763862-GCTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763862
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763859
    reference: chr 2
allele count: 3
allele frequency: 2.471658317954126e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-267_478-265delAAG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-267_478-265delAAG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-267_209-265delAAG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.883_885delAAG
  hgvsp: ENSP00000264094.3:p.Lys295del
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.883_885delAAG
  hgvsp: ENSP00000387103.1:p.Lys295del
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.883_885delAAG
  hgvsp: ENSP00000386696.1:p.Lys295del
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-267_296-265delAAG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-267_92-265delAAG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.883_885delAAG
  hgvsp: ENSP00000398260.1:p.Lys295del
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys295del
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: GCTT
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

2-74763865-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763865
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763865
    reference: chr 2
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.883A>C
  hgvsp: ENSP00000387103.1:p.Lys295Gln
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.883A>C
  hgvsp: ENSP00000398260.1:p.Lys295Gln
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-267A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-267A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.883A>C
  hgvsp: ENSP00000386696.1:p.Lys295Gln
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-267A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-267A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.883A>C
  hgvsp: ENSP00000264094.3:p.Lys295Gln
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-267A>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys295Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

2-74763866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763866
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763866
    reference: chr 2
allele count: 5
allele frequency: 4.119430529923544e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.882G>A
  hgvsp: ENST00000413469.1:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.882G>A
  hgvsp: ENST00000264094.3:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.882G>A
  hgvsp: ENST00000409549.1:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.882G>A
  hgvsp: ENST00000409249.1:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-268G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-268G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-268G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-268G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-268G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys294Lys
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

2-74763869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763869
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763869
    reference: chr 2
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.879G>A
  hgvsp: ENST00000409549.1:c.879G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.879G>A
  hgvsp: ENST00000264094.3:c.879G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-271G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-271G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.879G>A
  hgvsp: ENST00000409249.1:c.879G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-271G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-271G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-271G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.879G>A
  hgvsp: ENST00000413469.1:c.879G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln293Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

2-74763878-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763878
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763878
    reference: chr 2
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.870C>T
  hgvsp: ENST00000409549.1:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.870C>T
  hgvsp: ENST00000264094.3:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.870C>T
  hgvsp: ENST00000413469.1:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-280C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-280C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.870C>T
  hgvsp: ENST00000409249.1:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-280C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-280C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-280C>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser290Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-74763884-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763884
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763884
    reference: chr 2
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.864G>T
  hgvsp: ENST00000264094.3:c.864G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-286G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-286G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.864G>T
  hgvsp: ENST00000409549.1:c.864G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-286G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.864G>T
  hgvsp: ENST00000413469.1:c.864G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-286G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.864G>T
  hgvsp: ENST00000409249.1:c.864G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-286G>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala288Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

2-74763884-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763884
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763884
    reference: chr 2
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-286G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-286G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-286G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.864G>A
  hgvsp: ENST00000413469.1:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.864G>A
  hgvsp: ENST00000264094.3:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-286G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.864G>A
  hgvsp: ENST00000409549.1:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.864G>A
  hgvsp: ENST00000409249.1:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-286G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala288Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

2-74763885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763885
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763885
    reference: chr 2
allele count: 4
allele frequency: 3.295327225993541e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.863C>T
  hgvsp: ENSP00000264094.3:p.Ala288Val
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-287C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-287C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.863C>T
  hgvsp: ENSP00000387103.1:p.Ala288Val
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-287C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-287C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-287C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.863C>T
  hgvsp: ENSP00000398260.1:p.Ala288Val
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.863C>T
  hgvsp: ENSP00000386696.1:p.Ala288Val
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala288Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

2-74763886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763886
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763886
    reference: chr 2
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-288G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-288G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.862G>A
  hgvsp: ENSP00000264094.3:p.Ala288Thr
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-288G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-288G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.862G>A
  hgvsp: ENSP00000386696.1:p.Ala288Thr
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-288G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.862G>A
  hgvsp: ENSP00000387103.1:p.Ala288Thr
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.862G>A
  hgvsp: ENSP00000398260.1:p.Ala288Thr
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala288Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

2-74763887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763887
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763887
    reference: chr 2
allele count: 18
allele frequency: 1.482872818941229e-4
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-289C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.861C>T
  hgvsp: ENST00000264094.3:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-289C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.861C>T
  hgvsp: ENST00000409249.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-289C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-289C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-289C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.861C>T
  hgvsp: ENST00000413469.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.861C>T
  hgvsp: ENST00000409549.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr287Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

2-74763888-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763888
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763888
    reference: chr 2
allele count: 7
allele frequency: 5.76672762921589e-5
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.860A>G
  hgvsp: ENSP00000264094.3:p.Tyr287Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.860A>G
  hgvsp: ENSP00000386696.1:p.Tyr287Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.860A>G
  hgvsp: ENSP00000398260.1:p.Tyr287Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-290A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-290A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-290A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.860A>G
  hgvsp: ENSP00000387103.1:p.Tyr287Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-290A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-290A>G
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr287Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-74763893-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763893
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763893
    reference: chr 2
allele count: 4
allele frequency: 3.295272930980509e-5
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.855T>C
  hgvsp: ENST00000413469.1:c.855T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-295T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.855T>C
  hgvsp: ENST00000409249.1:c.855T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-295T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.855T>C
  hgvsp: ENST00000409549.1:c.855T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-295T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.855T>C
  hgvsp: ENST00000264094.3:c.855T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-295T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-295T>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro285Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

2-74763896-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763896
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763895
    reference: chr 2
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.851delG
  hgvsp: ENSP00000398260.1:p.Gly284AlafsTer?
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-299delG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-299delG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.851delG
  hgvsp: ENSP00000264094.3:p.Gly284AlafsTer26
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-299delG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.851delG
  hgvsp: ENSP00000386696.1:p.Gly284AlafsTer26
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.851delG
  hgvsp: ENSP00000387103.1:p.Gly284AlafsTer26
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-299delG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-299delG
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly284AlafsTer26
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: GC
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-74763897-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763897
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763897
    reference: chr 2
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.851G>A
  hgvsp: ENSP00000398260.1:p.Gly284Asp
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.851G>A
  hgvsp: ENSP00000264094.3:p.Gly284Asp
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.851G>A
  hgvsp: ENSP00000387103.1:p.Gly284Asp
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-299G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.851G>A
  hgvsp: ENSP00000386696.1:p.Gly284Asp
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-299G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-299G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-299G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-299G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly284Asp
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/2-74763912-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763912
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763912
    reference: chr 2
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-314T>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.836T>G
  hgvsp: ENSP00000264094.3:p.Val279Gly
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-314T>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.836T>G
  hgvsp: ENSP00000386696.1:p.Val279Gly
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-314T>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-314T>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-314T>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.836T>G
  hgvsp: ENSP00000398260.1:p.Val279Gly
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.836T>G
  hgvsp: ENSP00000387103.1:p.Val279Gly
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val279Gly
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-74763913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763913
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763913
    reference: chr 2
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-315G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.835G>A
  hgvsp: ENSP00000387103.1:p.Val279Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.835G>A
  hgvsp: ENSP00000398260.1:p.Val279Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.835G>A
  hgvsp: ENSP00000386696.1:p.Val279Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-315G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.835G>A
  hgvsp: ENSP00000264094.3:p.Val279Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-315G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-315G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-315G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45233
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val279Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

2-74763915-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763915
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763915
    reference: chr 2
allele count: 16
allele frequency: 1.318239491159556e-4
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.833T>C
  hgvsp: ENSP00000264094.3:p.Val278Ala
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-317T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-317T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-317T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.833T>C
  hgvsp: ENSP00000386696.1:p.Val278Ala
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-317T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.833T>C
  hgvsp: ENSP00000398260.1:p.Val278Ala
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.833T>C
  hgvsp: ENSP00000387103.1:p.Val278Ala
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-317T>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 29572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val278Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-74763923-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763923
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763924
    reference: chr 2
allele count: 396
allele frequency: 3.27391778828665e-3
allele num: 120956
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-326dupG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.824dupG
  hgvsp: ENSP00000387103.1:p.Ala277CysfsTer57
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.824dupG
  hgvsp: ENSP00000386696.1:p.Ala277CysfsTer57
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-326dupG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-326dupG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.824dupG
  hgvsp: ENSP00000398260.1:p.Ala277CysfsTer?
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-326dupG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.824dupG
  hgvsp: ENSP00000264094.3:p.Ala277CysfsTer57
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-326dupG
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 15093
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 29509
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10999
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 7.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 10
hgvs: p.Ala277CysfsTer57
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

2-74763923-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763923
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763923
    reference: chr 2
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-325C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-325C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.825C>G
  hgvsp: ENST00000264094.3:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.825C>G
  hgvsp: ENST00000409249.1:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.825C>G
  hgvsp: ENST00000409549.1:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.825C>G
  hgvsp: ENST00000413469.1:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-325C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-325C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-325C>G
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly275Gly
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

2-74763923-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763923
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763922
    reference: chr 2
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.824delG
  hgvsp: ENSP00000387103.1:p.Gly275AlafsTer5
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.824delG
  hgvsp: ENSP00000386696.1:p.Gly275AlafsTer5
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-326delG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-326delG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-326delG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.824delG
  hgvsp: ENSP00000398260.1:p.Gly275AlafsTer5
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.824delG
  hgvsp: ENSP00000264094.3:p.Gly275AlafsTer5
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-326delG
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-326delG
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly275AlafsTer5
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: GC
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/2-74763925-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763925
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763925
    reference: chr 2
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.823G>T
  hgvsp: ENSP00000386696.1:p.Gly275Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-327G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-327G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-327G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.823G>T
  hgvsp: ENSP00000398260.1:p.Gly275Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.823G>T
  hgvsp: ENSP00000387103.1:p.Gly275Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.823G>T
  hgvsp: ENSP00000264094.3:p.Gly275Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-327G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-327G>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45511
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly275Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS

2-74763925-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763925
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763925
    reference: chr 2
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-327G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.823G>C
  hgvsp: ENSP00000398260.1:p.Gly275Arg
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-327G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.823G>C
  hgvsp: ENSP00000264094.3:p.Gly275Arg
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.823G>C
  hgvsp: ENSP00000386696.1:p.Gly275Arg
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-327G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.823G>C
  hgvsp: ENSP00000387103.1:p.Gly275Arg
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-327G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-327G>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly275Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

2-74763929-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763929
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763929
    reference: chr 2
allele count: 2
allele frequency: 1.648152421135907e-5
allele num: 121348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-331G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-331G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-331G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.819G>C
  hgvsp: ENST00000409549.1:c.819G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-331G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.819G>C
  hgvsp: ENST00000264094.3:c.819G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.819G>C
  hgvsp: ENST00000409249.1:c.819G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.819G>C
  hgvsp: ENST00000413469.1:c.819G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-331G>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9131
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly273Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

2-74763935-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763935
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763935
    reference: chr 2
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.813C>T
  hgvsp: ENST00000409549.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-337C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.813C>T
  hgvsp: ENST00000264094.3:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.813C>T
  hgvsp: ENST00000409249.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-337C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-337C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-337C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-337C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.813C>T
  hgvsp: ENST00000413469.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 11140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys271Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-74763938-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763938
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763938
    reference: chr 2
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-340G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.810G>T
  hgvsp: ENSP00000264094.3:p.Arg270Ser
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-340G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.810G>T
  hgvsp: ENSP00000387103.1:p.Arg270Ser
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.810G>T
  hgvsp: ENSP00000398260.1:p.Arg270Ser
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-340G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-340G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.810G>T
  hgvsp: ENSP00000386696.1:p.Arg270Ser
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-340G>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg270Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

2-74763943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763943
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763943
    reference: chr 2
allele count: 7
allele frequency: 5.77062586559388e-5
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-345G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.805G>A
  hgvsp: ENSP00000386696.1:p.Ala269Thr
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.805G>A
  hgvsp: ENSP00000264094.3:p.Ala269Thr
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.805G>A
  hgvsp: ENSP00000387103.1:p.Ala269Thr
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-345G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-345G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-345G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.805G>A
  hgvsp: ENSP00000398260.1:p.Ala269Thr
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-345G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala269Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-74763944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763944
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763944
    reference: chr 2
allele count: 16
allele frequency: 1.31895670524615e-4
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.804C>T
  hgvsp: ENST00000409549.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.804C>T
  hgvsp: ENST00000409249.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-346C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.804C>T
  hgvsp: ENST00000413469.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.804C>T
  hgvsp: ENST00000264094.3:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-346C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-346C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-346C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-346C>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr268Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-74763951-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763951
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763951
    reference: chr 2
allele count: 22
allele frequency: 1.813685078318219e-4
allele num: 121300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.797A>G
  hgvsp: ENSP00000398260.1:p.Asn266Ser
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.797A>G
  hgvsp: ENSP00000386696.1:p.Asn266Ser
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-353A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.797A>G
  hgvsp: ENSP00000264094.3:p.Asn266Ser
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-353A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-353A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-353A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.797A>G
  hgvsp: ENSP00000387103.1:p.Asn266Ser
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-353A>G
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn266Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-74763957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763957
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763957
    reference: chr 2
allele count: 5
allele frequency: 4.122895261968765e-5
allele num: 121274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-359G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.791G>A
  hgvsp: ENSP00000264094.3:p.Arg264His
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-359G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.791G>A
  hgvsp: ENSP00000387103.1:p.Arg264His
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-359G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.791G>A
  hgvsp: ENSP00000398260.1:p.Arg264His
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-359G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.791G>A
  hgvsp: ENSP00000386696.1:p.Arg264His
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-359G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29791
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg264His
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

2-74763958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763958
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763958
    reference: chr 2
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-360C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-360C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.790C>T
  hgvsp: ENSP00000387103.1:p.Arg264Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.790C>T
  hgvsp: ENSP00000398260.1:p.Arg264Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.790C>T
  hgvsp: ENSP00000264094.3:p.Arg264Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-360C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-360C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-360C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.790C>T
  hgvsp: ENSP00000386696.1:p.Arg264Cys
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg264Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

2-74763960-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763960
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763960
    reference: chr 2
allele count: 3
allele frequency: 2.473859550747106e-5
allele num: 121268
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.788A>G
  hgvsp: ENSP00000264094.3:p.Tyr263Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-362A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-362A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-362A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.788A>G
  hgvsp: ENSP00000387103.1:p.Tyr263Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-362A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.788A>G
  hgvsp: ENSP00000386696.1:p.Tyr263Cys
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-362A>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.788A>G
  hgvsp: ENSP00000398260.1:p.Tyr263Cys
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr263Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-74763969-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763969
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763969
    reference: chr 2
allele count: 2
allele frequency: 1.650028875505322e-5
allele num: 121210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.779T>G
  hgvsp: ENSP00000386696.1:p.Leu260Arg
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.779T>G
  hgvsp: ENSP00000387103.1:p.Leu260Arg
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-371T>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-371T>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-371T>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.779T>G
  hgvsp: ENSP00000264094.3:p.Leu260Arg
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-371T>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.779T>G
  hgvsp: ENSP00000398260.1:p.Leu260Arg
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-371T>G
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu260Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

2-74763985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763985
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763985
    reference: chr 2
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-387C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-387C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-387C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-387C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.763C>T
  hgvsp: ENSP00000387103.1:p.Leu255Phe
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-387C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.763C>T
  hgvsp: ENSP00000398260.1:p.Leu255Phe
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.763C>T
  hgvsp: ENSP00000386696.1:p.Leu255Phe
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.763C>T
  hgvsp: ENSP00000264094.3:p.Leu255Phe
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8979
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu255Phe
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

2-74763995-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763995
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763995
    reference: chr 2
allele count: 3
allele frequency: 2.483896073788273e-5
allele num: 120778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-397G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.753G>A
  hgvsp: ENST00000264094.3:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-397G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.753G>A
  hgvsp: ENST00000413469.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.753G>A
  hgvsp: ENST00000409249.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-397G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.753G>A
  hgvsp: ENST00000409549.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-397G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-397G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14992
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44971
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr251Thr
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS

2-74763996-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763996
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763996
    reference: chr 2
allele count: 10
allele frequency: 8.278831029058697e-5
allele num: 120790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.752C>T
  hgvsp: ENSP00000398260.1:p.Thr251Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.752C>T
  hgvsp: ENSP00000264094.3:p.Thr251Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.752C>T
  hgvsp: ENSP00000387103.1:p.Thr251Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-398C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-398C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.752C>T
  hgvsp: ENSP00000386696.1:p.Thr251Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-398C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-398C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-398C>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr251Met
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-74763999-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74763999
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74763999
    reference: chr 2
allele count: 1
allele frequency: 8.297653423611802e-6
allele num: 120516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-401G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-401G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-401G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.749G>T
  hgvsp: ENSP00000386696.1:p.Gly250Val
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.749G>T
  hgvsp: ENSP00000398260.1:p.Gly250Val
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.749G>T
  hgvsp: ENSP00000387103.1:p.Gly250Val
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-401G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.749G>T
  hgvsp: ENSP00000264094.3:p.Gly250Val
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-401G>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly250Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

2-74764001-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764001
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764001
    reference: chr 2
allele count: 1
allele frequency: 8.29985724245543e-6
allele num: 120484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-403G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.747G>A
  hgvsp: ENST00000409549.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.747G>A
  hgvsp: ENST00000409249.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.747G>A
  hgvsp: ENST00000264094.3:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.747G>A
  hgvsp: ENST00000413469.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-403G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-403G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-403G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-403G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val249Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

2-74764003-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764003
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764003
    reference: chr 2
allele count: 1
allele frequency: 8.302337938363443e-6
allele num: 120448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.745G>A
  hgvsp: ENSP00000398260.1:p.Val249Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.745G>A
  hgvsp: ENSP00000387103.1:p.Val249Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-405G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-405G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-405G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-405G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.745G>A
  hgvsp: ENSP00000386696.1:p.Val249Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.745G>A
  hgvsp: ENSP00000264094.3:p.Val249Met
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-405G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8672
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val249Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

2-74764004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764004
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764004
    reference: chr 2
allele count: 6
allele frequency: 4.981981832372918e-5
allele num: 120434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.744C>T
  hgvsp: ENST00000409549.1:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-406C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.744C>T
  hgvsp: ENST00000409249.1:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-406C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-406C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.744C>T
  hgvsp: ENST00000264094.3:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-406C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-406C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.744C>T
  hgvsp: ENST00000413469.1:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44735
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Cys248Cys
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

2-74764007-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764007
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764007
    reference: chr 2
allele count: 18
allele frequency: 1.494768310911809e-4
allele num: 120420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.741G>A
  hgvsp: ENST00000409249.1:c.741G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-409G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-409G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-409G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.741G>A
  hgvsp: ENST00000409549.1:c.741G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-409G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.741G>A
  hgvsp: ENST00000413469.1:c.741G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-409G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.741G>A
  hgvsp: ENST00000264094.3:c.741G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14751
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala247Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

2-74764016-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764016
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764016
    reference: chr 2
allele count: 1
allele frequency: 8.324453915823122e-6
allele num: 120128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-418T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-418T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.732T>C
  hgvsp: ENST00000264094.3:c.732T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.732T>C
  hgvsp: ENST00000409249.1:c.732T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.732T>C
  hgvsp: ENST00000409549.1:c.732T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-418T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-418T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.732T>C
  hgvsp: ENST00000413469.1:c.732T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-418T>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His244His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-74764041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764041
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764041
    reference: chr 2
allele count: 1
allele frequency: 8.419776370739593e-6
allele num: 118768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.707G>A
  hgvsp: ENSP00000386696.1:p.Arg236Gln
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-443G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.707G>A
  hgvsp: ENSP00000398260.1:p.Arg236Gln
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-443G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.707G>A
  hgvsp: ENSP00000264094.3:p.Arg236Gln
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-443G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-443G>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.707G>A
  hgvsp: ENSP00000387103.1:p.Arg236Gln
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-443G>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14348
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg236Gln
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

2-74764042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764042
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764042
    reference: chr 2
allele count: 44
allele frequency: 3.707198705850633e-4
allele num: 118688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.706C>T
  hgvsp: ENSP00000386696.1:p.Arg236Trp
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-444C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-444C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-444C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-444C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.706C>T
  hgvsp: ENSP00000264094.3:p.Arg236Trp
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-444C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.706C>T
  hgvsp: ENSP00000387103.1:p.Arg236Trp
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.706C>T
  hgvsp: ENSP00000398260.1:p.Arg236Trp
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10870
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28680
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14306
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8330
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 44
hgvs: p.Arg236Trp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-74764042-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764042
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764042
    reference: chr 2
allele count: 1
allele frequency: 8.425451604205986e-6
allele num: 118688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-444C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.706C>A
  hgvsp: ENST00000264094.3:c.706C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.706C>A
  hgvsp: ENST00000409249.1:c.706C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.706C>A
  hgvsp: ENST00000409549.1:c.706C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-444C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.706C>A
  hgvsp: ENST00000413469.1:c.706C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-444C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-444C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-444C>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg236Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

2-74764051-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764051
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764051
    reference: chr 2
allele count: 1
allele frequency: 8.501377223110144e-6
allele num: 117628
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.697C>G
  hgvsp: ENSP00000398260.1:p.Leu233Val
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-453C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.697C>G
  hgvsp: ENSP00000387103.1:p.Leu233Val
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.697C>G
  hgvsp: ENSP00000264094.3:p.Leu233Val
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-453C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.697C>G
  hgvsp: ENSP00000386696.1:p.Leu233Val
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-453C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-453C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-453C>G
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu233Val
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/2-74764056-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764056
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764056
    reference: chr 2
allele count: 1
allele frequency: 8.541898009737763e-6
allele num: 117070
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.693-1G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-458G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-458G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.693-1G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-458G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-458G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-458G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.693-1G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.693-1G>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 9.75e1
  variant carriers: 1
hgvs: c.693-1G>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-74764065-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764065
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764065
    reference: chr 2
allele count: 1
allele frequency: 8.7139894386448e-6
allele num: 114758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-467G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-467G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.693-10G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-467G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.693-10G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-467G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-467G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.693-10G>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.693-10G>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

2-74764066-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764066
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764066
    reference: chr 2
allele count: 7
allele frequency: 6.115566738306162e-5
allele num: 114462
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-468T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.693-11T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.693-11T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-468T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-468T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-468T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.693-11T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.693-11T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-468T>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25010
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37724
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 6
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-74764070-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764070
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764070
    reference: chr 2
allele count: 14
allele frequency: 1.24683837412276e-4
allele num: 112284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-472C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-472C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-472C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.693-15C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-472C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.693-15C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.693-15C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.693-15C>A
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-472C>A
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10003
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21965
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

2-74764077-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764077
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764077
    reference: chr 2
allele count: 4
allele frequency: 3.621220351258374e-5
allele num: 110460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-479C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-479C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-479C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.693-22C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-479C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.693-22C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-479C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.693-22C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.693-22C>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19114
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-74764078-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764078
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764078
    reference: chr 2
allele count: 1
allele frequency: 9.079353550027237e-6
allele num: 110140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.693-23G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-480G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-480G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-480G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-480G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.693-23G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.693-23G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-480G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.693-23G>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18392
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

2-74764079-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764079
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764079
    reference: chr 2
allele count: 1
allele frequency: 9.099512266142535e-6
allele num: 109896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-481T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-481T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-481T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-481T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.693-24T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-481T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.693-24T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.693-24T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.693-24T>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

2-74764088-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764088
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764088
    reference: chr 2
allele count: 3
allele frequency: 2.790126671750898e-5
allele num: 107522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.693-33T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-490T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-490T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-490T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.693-33T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-490T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-490T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.693-33T>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.693-33T>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21235
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10308
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-74764102-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764102
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764102
    reference: chr 2
allele count: 3
allele frequency: 3.112485215695226e-5
allele num: 96386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.693-47G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.693-47G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-504G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-504G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-504G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-504G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.693-47G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-504G>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.693-47G>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7896
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19261
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15984
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5814
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

2-74764106-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74764106
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74764106
    reference: chr 2
allele count: 1
allele frequency: 1.048130135837666e-5
allele num: 95408
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.693-51A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.693-51A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.296-508A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.92-508A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.693-51A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.478-508A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.478-508A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.209-508A>C
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.693-51A>C
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19175
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4577
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

2-74776446-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74776446
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74776446
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 12888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.692+50C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.692+50C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.208+50C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.477+866C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115325
  ensembl transcript: ENST00000485132
  gene symbol: DOK1
  hgvsc: ENST00000485132.1:n.103-94G>C
  variant of: http://identifiers.org/hgnc/2990
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.692+50C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.91+50C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.295+50C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.477+866C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.692+50C>G
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115325
  ensembl protein: ENSP00000387016
  ensembl transcript: ENST00000409429
  gene symbol: DOK1
  hgvsc: ENST00000409429.1:c.-358+147G>C
  variant of: http://identifiers.org/hgnc/2990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000484369
  gene symbol: LOXL3
  hgvsc: ENST00000484369.1:n.705+50C>G
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17172
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

2-74776448-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74776448
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74776448
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 12882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386545
  ensembl transcript: ENST00000409986
  gene symbol: LOXL3
  hgvsc: ENST00000409986.1:c.477+864C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000264094
  ensembl transcript: ENST00000264094
  gene symbol: LOXL3
  hgvsc: ENST00000264094.3:c.692+48C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000470907
  gene symbol: LOXL3
  hgvsc: ENST00000470907.2:n.295+48C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115325
  ensembl transcript: ENST00000485132
  gene symbol: DOK1
  hgvsc: ENST00000485132.1:n.103-92G>A
  variant of: http://identifiers.org/hgnc/2990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000386696
  ensembl transcript: ENST00000409549
  gene symbol: LOXL3
  hgvsc: ENST00000409549.1:c.692+48C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000404026
  ensembl transcript: ENST00000420535
  gene symbol: LOXL3
  hgvsc: ENST00000420535.1:c.91+48C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000481835
  gene symbol: LOXL3
  hgvsc: ENST00000481835.2:n.208+48C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115325
  ensembl protein: ENSP00000387016
  ensembl transcript: ENST00000409429
  gene symbol: DOK1
  hgvsc: ENST00000409429.1:c.-358+149G>A
  variant of: http://identifiers.org/hgnc/2990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000377512
  ensembl transcript: ENST00000393937
  gene symbol: LOXL3
  hgvsc: ENST00000393937.2:c.477+864C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000387103
  ensembl transcript: ENST00000409249
  gene symbol: LOXL3
  hgvsc: ENST00000409249.1:c.692+48C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl transcript: ENST00000484369
  gene symbol: LOXL3
  hgvsc: ENST00000484369.1:n.705+48C>T
  variant of: http://identifiers.org/hgnc/13869
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115318
  ensembl protein: ENSP00000398260
  ensembl transcript: ENST00000413469
  gene symbol: LOXL3
  hgvsc: ENST00000413469.1:c.692+48C>T
  variant of: http://identifiers.org/hgnc/13869
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17166
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39140
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8501
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513408801985592e-5
allele num: 66076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.705e0

DP
type: SiteQuality
SIO_000300: 1.727238e6

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e0

FS
type: SiteQuality
SIO_000300: 2.045e0

QD
type: SiteQuality
SIO_000300: 1.62e1

VQSLOD
type: SiteQuality
SIO_000300: -5.463e-1

GenotypeQuality
all individuals: 436
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.77e-1

QD
type: SiteQuality
SIO_000300: 1.717e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.814e0

VQSLOD
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 1.728266e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.582e0

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51267622678042e-5
allele num: 66108
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e0

DP
type: SiteQuality
SIO_000300: 1.728801e6

VQSLOD
type: SiteQuality
SIO_000300: 4.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.335e0

QD
type: SiteQuality
SIO_000300: 1.2e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.27e-1

GenotypeQuality
all individuals: 440
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1747
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2599
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512493193780628e-5
allele num: 66116
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.045e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: -2.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.93e-1

QD
type: SiteQuality
SIO_000300: 1.35e1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.732841e6

GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8543
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 698
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 502
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 628
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 41445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2928
bin: 9.75e1
variant carriers: 1193

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 1

South Asian
type: Population
allele count: 81
allele frequency: 5.33175355450237e-3
allele num: 15192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 89
allele frequency: 7.694968009683555e-3
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 928
allele frequency: 1.401516295647446e-2
allele num: 66214
num of homozygotes: 15

African
type: Population
allele count: 32
allele frequency: 3.082257753804662e-3
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 69
allele frequency: 1.044821320411872e-2
allele num: 6604
num of homozygotes: 1

Other
type: Population
allele count: 16
allele frequency: 1.797752808988764e-2
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

QD
type: SiteQuality
SIO_000300: 1.501e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

DP
type: SiteQuality
SIO_000300: 1.767381e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.28e0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020509257860875e-5
allele num: 66214
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.767381e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

QD
type: SiteQuality
SIO_000300: 1.501e1

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8816
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.647e0

DP
type: SiteQuality
SIO_000300: 1.735029e6

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.837e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.22e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

GenotypeQuality
all individuals: 1786
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43884
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.742599e6

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.763e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.87e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.342e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

GenotypeQuality
all individuals: 572
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44022
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.020832078993317e-5
allele num: 66436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.745448e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.437e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

FS
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

DP
type: SiteQuality
SIO_000300: 1.759856e6

QD
type: SiteQuality
SIO_000300: 1.257e1

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9014
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

FS
type: SiteQuality
SIO_000300: 8.129999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.94e-1

DP
type: SiteQuality
SIO_000300: 1.760646e6

VQSLOD
type: SiteQuality
SIO_000300: -2.938e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 9.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.68e-1

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1832
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

QD
type: SiteQuality
SIO_000300: 1.293e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.761226e6

FS
type: SiteQuality
SIO_000300: 2.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.248e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.68e-1

MQ
type: SiteQuality
SIO_000300: 6.078e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 727
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
all individuals: 9033
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variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.822821728034998e-4
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.042e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQ
type: SiteQuality
SIO_000300: 5.99e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.763566e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 1.295e1

GenotypeQuality
all individuals: 728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1550
bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496537665997182e-5
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

MQRankSum
type: SiteQuality
SIO_000300: -4.34e-1

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.535e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

DP
type: SiteQuality
SIO_000300: 1.764124e6

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.41e1

DP
type: SiteQuality
SIO_000300: 1.764415e6

MQRankSum
type: SiteQuality
SIO_000300: 7.57e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.995563283170454e-5
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.278e1

DP
type: SiteQuality
SIO_000300: 1.764597e6

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.671e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 1551
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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FS
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -2.341e0

DP
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SIO_000300: 1.764003e6

InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
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ClippingRankSum
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FS
type: SiteQuality
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: 5.8e-1

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
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Latino
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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SIO_000300: 5.967e1

ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
type: SiteQuality
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
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African
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.146e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
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allele num: 16512
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Other
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.764121e6

InbreedingCoeff
type: SiteQuality
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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Other
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European (Finnish)
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African
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InbreedingCoeff
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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Other
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East Asian
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African
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European (Non-Finnish)
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allele num: 66722
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VQSLOD
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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MQ
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VQSLOD
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QD
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DP
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.763877e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.35e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

MQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.362e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.763535e6

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.918e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.054e1

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.336e0

DP
type: SiteQuality
SIO_000300: 1.763416e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.312e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e0

MQRankSum
type: SiteQuality
SIO_000300: -1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

DP
type: SiteQuality
SIO_000300: 1.763263e6

QD
type: SiteQuality
SIO_000300: 1.397e1

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.049e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.893e0

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.474e0

DP
type: SiteQuality
SIO_000300: 1.763158e6

QD
type: SiteQuality
SIO_000300: 9.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.478682170542636e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.212389380530973e-3
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

DP
type: SiteQuality
SIO_000300: 1.76417e6

GenotypeQuality
all individuals: 45052
bin: 6.25e1
variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1351
bin: 9.75e1
variant carriers: 227

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 16

African
type: Population
allele count: 38
allele frequency: 3.67504835589942e-3
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 335
allele frequency: 5.044421020930583e-3
allele num: 66410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 7.777777777777778e-3
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212415130940834e-4
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.038241910365115e-3
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.524e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

DP
type: SiteQuality
SIO_000300: 1.780622e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

QD
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8991
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.780622e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.524e0

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.77e-1

FS
type: SiteQuality
SIO_000300: 8.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1812
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GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.77e-1

QD
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 8.68e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

DP
type: SiteQuality
SIO_000300: 1.780622e6

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.524e0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66698
num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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QD
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BaseQRankSum
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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num of homozygotes: 0

FS
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.0714e1

MQRankSum
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QD
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MQ
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
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European (Non-Finnish)
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allele num: 66698
num of homozygotes: 0

Other
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Latino
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ClippingRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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DP
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66684
num of homozygotes: 0

European (Finnish)
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African
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Latino
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East Asian
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Other
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South Asian
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allele num: 16512
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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allele count: 12
allele frequency: 1.799478151336113e-4
allele num: 66686
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Other
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MQ
type: SiteQuality
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ClippingRankSum
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DP
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QD
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FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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BaseQRankSum
type: SiteQuality
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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DP
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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allele frequency: 1.728907330567082e-4
allele num: 11568
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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FS
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DP
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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East Asian
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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East Asian
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Latino
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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FS
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InbreedingCoeff
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MQRankSum
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DP
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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East Asian
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Latino
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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QD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Other
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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MQ
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DP
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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VQSLOD
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DP
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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East Asian
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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European (Finnish)
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Latino
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African
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.342e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1098
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66160
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

QD
type: SiteQuality
SIO_000300: 1.094e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

DP
type: SiteQuality
SIO_000300: 1.700092e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

East Asian
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allele count: 5
allele frequency: 5.789717461787865e-4
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66150
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

BaseQRankSum
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SIO_000300: -2.402e0

QD
type: SiteQuality
SIO_000300: 1.047e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

DP
type: SiteQuality
SIO_000300: 1.700127e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.72133526850508e-4
allele num: 66144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.698067e6

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

FS
type: SiteQuality
SIO_000300: 5.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.68912e6

MQ
type: SiteQuality
SIO_000300: 5.765e1

VQSLOD
type: SiteQuality
SIO_000300: -3.15e0

FS
type: SiteQuality
SIO_000300: 1.2616e1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.117e0

QD
type: SiteQuality
SIO_000300: 1.305e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65262
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.141e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.517e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.59896983075791e-5
allele num: 65232
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Latino
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allele count: 40
allele frequency: 3.483713638738896e-3
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
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Other
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.709284096847239e-5
allele num: 11482
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65232
num of homozygotes: 0

African
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South Asian
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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QD
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.544544668231805e-5
allele num: 64744
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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VQSLOD
type: SiteQuality
SIO_000300: -1.186e0

MQ
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.551542232979582e-5
allele num: 64452
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.942e0

DP
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MQ
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VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.302e0

FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.027e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15838
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
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allele frequency: 1.057305984351871e-4
allele num: 9458
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 63310
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.233e0

FS
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11060
num of homozygotes: 0

African
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allele count: 6
allele frequency: 6.37213254035684e-4
allele num: 9416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15800
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.582979801177737e-5
allele num: 63172
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.881e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 1.536443e6

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.845358922310389e-4
allele num: 10838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 12
allele frequency: 1.298701298701299e-3
allele num: 9240
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.5e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

FS
type: SiteQuality
SIO_000300: 2.086e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.039e0

MQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 1.423613e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.103265666372463e-4
allele num: 9064
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.962580138688996e-4
allele num: 15286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61066
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 1.304242e6

VQSLOD
type: SiteQuality
SIO_000300: -9.0e-2

FS
type: SiteQuality
SIO_000300: 6.067e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.362e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.247e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.560818790185015e-5
allele num: 15242
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60908
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5502
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

QD
type: SiteQuality
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MQ
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BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.188e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.284085e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10614
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.576351440220966e-5
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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VQSLOD
type: SiteQuality
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FS
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QD
type: SiteQuality
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Latino
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allele frequency: 2.886836027713626e-4
allele num: 10392
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MQRankSum
type: SiteQuality
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FS
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BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.524622655892667e-4
allele num: 13118
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
type: Population
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allele frequency: 1.251877816725087e-4
allele num: 7988
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Other
type: Population
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FS
type: SiteQuality
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QD
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MQ
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
all individuals: 12119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4330
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5770
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3026
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7223
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.476232654266312e-4
allele num: 6774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4746
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.562e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

DP
type: SiteQuality
SIO_000300: 9.70136e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7434
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5466
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7028
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23997
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4810
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.256e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.534e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.85e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 3.14044e5

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 9.75e1
variant carriers: 0