4-679921-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679921
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679921
    reference: chr 4
allele count: 2
allele frequency: 1.685402726981612e-5
allele num: 118666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.465C>T
  hgvsp: ENST00000404286.2:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.465C>T
  hgvsp: ENST00000322224.4:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.273C>T
  hgvsp: ENST00000507165.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+400C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+400C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+400C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.455C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.273C>T
  hgvsp: ENST00000503156.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16904
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe155Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

4-679922-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679922
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679922
    reference: chr 4
allele count: 1
allele frequency: 8.423890152472412e-6
allele num: 118710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+399T>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.454T>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.464T>A
  hgvsp: ENSP00000320234.4:p.Phe155Tyr
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+399T>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.272T>A
  hgvsp: ENSP00000425753.1:p.Phe91Tyr
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+399T>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.272T>A
  hgvsp: ENSP00000424556.1:p.Phe91Tyr
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.464T>A
  hgvsp: ENSP00000384616.2:p.Phe155Tyr
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe155Tyr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

4-679927-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679927
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679927
    reference: chr 4
allele count: 1
allele frequency: 8.42133629764371e-6
allele num: 118746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.267G>A
  hgvsp: ENST00000507165.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+394G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.459G>A
  hgvsp: ENST00000322224.4:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.267G>A
  hgvsp: ENST00000503156.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+394G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.449G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.459G>A
  hgvsp: ENST00000404286.2:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+394G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2084
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu153Leu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

4-679929-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679929
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679929
    reference: chr 4
allele count: 1
allele frequency: 8.41779184484326e-6
allele num: 118796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.457T>C
  hgvsp: ENST00000404286.2:c.457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.265T>C
  hgvsp: ENST00000507165.1:c.265T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+392T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.457T>C
  hgvsp: ENST00000322224.4:c.457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.265T>C
  hgvsp: ENST00000503156.1:c.265T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.447T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+392T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+392T>C
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22448
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6806
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu153Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-679942-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679942
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679942
    reference: chr 4
allele count: 3
allele frequency: 2.52037301520625e-5
allele num: 119030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+379C>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.444C>A
  hgvsp: ENST00000404286.2:c.444C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.444C>A
  hgvsp: ENST00000322224.4:c.444C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.252C>A
  hgvsp: ENST00000503156.1:c.252C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.434C>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+379C>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+379C>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.252C>A
  hgvsp: ENST00000507165.1:c.252C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18036
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23182
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6899
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 9.25e1
  variant carriers: 0
hgvs: n.434C>A
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

4-679943-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679943
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679943
    reference: chr 4
allele count: 3
allele frequency: 2.519695620769011e-5
allele num: 119062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.443C>T
  hgvsp: ENSP00000384616.2:p.Ala148Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.443C>T
  hgvsp: ENSP00000320234.4:p.Ala148Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+378C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+378C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.251C>T
  hgvsp: ENSP00000424556.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+378C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.251C>T
  hgvsp: ENSP00000425753.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala148Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-679949-GAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679949
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679946
    reference: chr 4
allele count: 2
allele frequency: 1.677599020282172e-5
allele num: 119218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.434_436delTCT
  hgvsp: ENSP00000384616.2:p.Phe145del
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+369_294+371delTCT
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+369_294+371delTCT
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-9_433-7delTCT
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.242_244delTCT
  hgvsp: ENSP00000425753.1:p.Phe81del
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.242_244delTCT
  hgvsp: ENSP00000424556.1:p.Phe81del
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+369_228+371delTCT
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.434_436delTCT
  hgvsp: ENSP00000320234.4:p.Phe145del
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe145del
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GAGA
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

4-679968-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679968
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679968
    reference: chr 4
allele count: 1
allele frequency: 8.365680631776201e-6
allele num: 119536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.226C>T
  hgvsp: ENSP00000425753.1:p.Gln76Ter
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.418C>T
  hgvsp: ENSP00000320234.4:p.Gln140Ter
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+353C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.226C>T
  hgvsp: ENSP00000424556.1:p.Gln76Ter
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+353C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-25C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.418C>T
  hgvsp: ENSP00000384616.2:p.Gln140Ter
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+353C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln140Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

4-679969-GGCAAGGGCACAGAGGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679969
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679953
    reference: chr 4
allele count: 1
allele frequency: 8.36344172353807e-6
allele num: 119568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsp: ENSP00000384616.2:p.Ser134ThrfsTer56
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsp: ENSP00000320234.4:p.Ser134ThrfsTer56
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsp: ENSP00000424556.1:p.Ser70ThrfsTer56
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsp: ENSP00000425753.1:p.Ser70ThrfsTer56
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser134ThrfsTer56
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: GGCAAGGGCACAGAGGC
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

4-679980-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679980
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679980
    reference: chr 4
allele count: 18
allele frequency: 1.503081316699233e-4
allele num: 119754
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.406T>C
  hgvsp: ENSP00000320234.4:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+341T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.214T>C
  hgvsp: ENSP00000424556.1:p.Cys72Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.406T>C
  hgvsp: ENSP00000384616.2:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.214T>C
  hgvsp: ENSP00000425753.1:p.Cys72Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-37T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+341T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+341T>C
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9788
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys136Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

4-679984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679984
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679984
    reference: chr 4
allele count: 1
allele frequency: 8.348499774590506e-6
allele num: 119782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+337C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.210C>T
  hgvsp: ENST00000503156.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.210C>T
  hgvsp: ENST00000507165.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.402C>T
  hgvsp: ENST00000404286.2:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+337C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-41C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.402C>T
  hgvsp: ENST00000322224.4:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+337C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser134Ser
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

4-679988-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679988
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679987
    reference: chr 4
allele count: 1
allele frequency: 8.343623802689983e-6
allele num: 119852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-46delC
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.397delC
  hgvsp: ENSP00000320234.4:p.Gln133ArgfsTer62
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.205delC
  hgvsp: ENSP00000425753.1:p.Gln69ArgfsTer62
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.397delC
  hgvsp: ENSP00000384616.2:p.Gln133ArgfsTer62
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+332delC
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.205delC
  hgvsp: ENSP00000424556.1:p.Gln69ArgfsTer62
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+332delC
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+332delC
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln133ArgfsTer62
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: TG
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-679992-CACCCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679992
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679987
    reference: chr 4
allele count: 1
allele frequency: 8.340005337603416e-6
allele num: 119904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.197_201delTGGGT
  hgvsp: ENSP00000424556.1:p.Met66ArgfsTer59
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.389_393delTGGGT
  hgvsp: ENSP00000320234.4:p.Met130ArgfsTer59
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-54_433-50delTGGGT
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.389_393delTGGGT
  hgvsp: ENSP00000384616.2:p.Met130ArgfsTer59
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+324_228+328delTGGGT
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.197_201delTGGGT
  hgvsp: ENSP00000425753.1:p.Met66ArgfsTer59
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+324_294+328delTGGGT
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+324_294+328delTGGGT
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met130ArgfsTer59
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: CACCCA
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

4-679993-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679993
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679993
    reference: chr 4
allele count: 4
allele frequency: 3.3358908496514e-5
allele num: 119908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+328T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.201T>C
  hgvsp: ENST00000507165.1:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+328T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.393T>C
  hgvsp: ENST00000404286.2:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.201T>C
  hgvsp: ENST00000503156.1:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.393T>C
  hgvsp: ENST00000322224.4:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-50T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+328T>C
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly131Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

4-679998-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679998
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679998
    reference: chr 4
allele count: 1
allele frequency: 8.333750020834376e-6
allele num: 119994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.196A>G
  hgvsp: ENSP00000425753.1:p.Met66Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.388A>G
  hgvsp: ENSP00000320234.4:p.Met130Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+323A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+323A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+323A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.388A>G
  hgvsp: ENSP00000384616.2:p.Met130Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.196A>G
  hgvsp: ENSP00000424556.1:p.Met66Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-55A>G
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43401
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met130Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-679999-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 679999
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 679999
    reference: chr 4
allele count: 2
allele frequency: 1.666555562962469e-5
allele num: 120008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-56C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.387C>G
  hgvsp: ENST00000404286.2:c.387C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.387C>G
  hgvsp: ENST00000322224.4:c.387C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+322C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+322C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.195C>G
  hgvsp: ENST00000507165.1:c.195C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.195C>G
  hgvsp: ENST00000503156.1:c.195C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+322C>G
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43407
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu129Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

4-680001-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680001
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680001
    reference: chr 4
allele count: 105
allele frequency: 8.745772876443053e-4
allele num: 120058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+320C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.193C>T
  hgvsp: ENSP00000425753.1:p.Leu65Phe
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+320C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.385C>T
  hgvsp: ENSP00000384616.2:p.Leu129Phe
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+320C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-58C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.193C>T
  hgvsp: ENSP00000424556.1:p.Leu65Phe
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.385C>T
  hgvsp: ENSP00000320234.4:p.Leu129Phe
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 9.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu129Phe
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-680007-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680007
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680007
    reference: chr 4
allele count: 1
allele frequency: 8.328752519447637e-6
allele num: 120066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.187G>T
  hgvsp: ENSP00000424556.1:p.Ala63Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-64G>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+314G>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.187G>T
  hgvsp: ENSP00000425753.1:p.Ala63Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.379G>T
  hgvsp: ENSP00000320234.4:p.Ala127Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+314G>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.379G>T
  hgvsp: ENSP00000384616.2:p.Ala127Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+314G>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala127Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-680012-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680012
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680012
    reference: chr 4
allele count: 5
allele frequency: 4.164029448016257e-5
allele num: 120076
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.374C>G
  hgvsp: ENSP00000320234.4:p.Pro125Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.182C>G
  hgvsp: ENSP00000425753.1:p.Pro61Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.182C>G
  hgvsp: ENSP00000424556.1:p.Pro61Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-69C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.374C>G
  hgvsp: ENSP00000384616.2:p.Pro125Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+309C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+309C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+309C>G
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43483
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Pro125Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

4-680022-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680022
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680022
    reference: chr 4
allele count: 6
allele frequency: 4.995670418970226e-5
allele num: 120104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.172A>G
  hgvsp: ENSP00000424556.1:p.Thr58Ala
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+299A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-79A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.364A>G
  hgvsp: ENSP00000320234.4:p.Thr122Ala
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.364A>G
  hgvsp: ENSP00000384616.2:p.Thr122Ala
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.172A>G
  hgvsp: ENSP00000425753.1:p.Thr58Ala
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+299A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+299A>G
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr122Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

4-680023-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680023
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680023
    reference: chr 4
allele count: 1
allele frequency: 8.327088017320342e-6
allele num: 120090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.171G>A
  hgvsp: ENST00000503156.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.363G>A
  hgvsp: ENST00000404286.2:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.171G>A
  hgvsp: ENST00000507165.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.363G>A
  hgvsp: ENST00000322224.4:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-80G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+298G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+298G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+298G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly121Gly
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

4-680026-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680026
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680026
    reference: chr 4
allele count: 1
allele frequency: 8.327920185212944e-6
allele num: 120078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-83T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+295T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.168T>C
  hgvsp: ENST00000503156.1:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.360T>C
  hgvsp: ENST00000322224.4:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+295T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.168T>C
  hgvsp: ENST00000507165.1:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+295T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.360T>C
  hgvsp: ENST00000404286.2:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val120Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

4-680029-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680029
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680029
    reference: chr 4
allele count: 3
allele frequency: 2.498500899460324e-5
allele num: 120072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+292T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.165T>C
  hgvsp: ENST00000507165.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+292T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.165T>C
  hgvsp: ENST00000503156.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+292T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.357T>C
  hgvsp: ENST00000404286.2:c.357T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-86T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.357T>C
  hgvsp: ENST00000322224.4:c.357T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val119Val
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

4-680030-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680030
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680030
    reference: chr 4
allele count: 1
allele frequency: 8.328752519447637e-6
allele num: 120066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.164T>C
  hgvsp: ENSP00000425753.1:p.Val55Ala
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.164T>C
  hgvsp: ENSP00000424556.1:p.Val55Ala
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.356T>C
  hgvsp: ENSP00000384616.2:p.Val119Ala
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.356T>C
  hgvsp: ENSP00000320234.4:p.Val119Ala
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+291T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+291T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+291T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-87T>C
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val119Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

4-680034-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680034
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680034
    reference: chr 4
allele count: 1
allele frequency: 8.329030001166064e-6
allele num: 120062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+287A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+287A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.160A>G
  hgvsp: ENSP00000424556.1:p.Met54Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-91A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.352A>G
  hgvsp: ENSP00000384616.2:p.Met118Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.160A>G
  hgvsp: ENSP00000425753.1:p.Met54Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.352A>G
  hgvsp: ENSP00000320234.4:p.Met118Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+287A>G
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43516
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met118Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

4-680036-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680036
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680036
    reference: chr 4
allele count: 1
allele frequency: 8.330556481172942e-6
allele num: 120040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+285G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.350G>C
  hgvsp: ENSP00000320234.4:p.Cys117Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-93G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.350G>C
  hgvsp: ENSP00000384616.2:p.Cys117Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+285G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.158G>C
  hgvsp: ENSP00000424556.1:p.Cys53Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.158G>C
  hgvsp: ENSP00000425753.1:p.Cys53Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+285G>C
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys117Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

4-680037-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680037
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680037
    reference: chr 4
allele count: 1
allele frequency: 8.330695279828055e-6
allele num: 120038
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+284T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+284T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.157T>C
  hgvsp: ENSP00000424556.1:p.Cys53Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.157T>C
  hgvsp: ENSP00000425753.1:p.Cys53Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.349T>C
  hgvsp: ENSP00000384616.2:p.Cys117Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+284T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.349T>C
  hgvsp: ENSP00000320234.4:p.Cys117Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-94T>C
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24879
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys117Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

4-680038-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680038
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680038
    reference: chr 4
allele count: 1
allele frequency: 8.332777814812346e-6
allele num: 120008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.156C>T
  hgvsp: ENST00000503156.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.156C>T
  hgvsp: ENST00000507165.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.348C>T
  hgvsp: ENST00000404286.2:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+283C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-95C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+283C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+283C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.348C>T
  hgvsp: ENST00000322224.4:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro116Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

4-680039-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680039
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680039
    reference: chr 4
allele count: 1
allele frequency: 8.333750020834376e-6
allele num: 119994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+282C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+282C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.347C>T
  hgvsp: ENSP00000384616.2:p.Pro116Leu
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.155C>T
  hgvsp: ENSP00000424556.1:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.347C>T
  hgvsp: ENSP00000320234.4:p.Pro116Leu
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.155C>T
  hgvsp: ENSP00000425753.1:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+282C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-96C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro116Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

4-680046-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680046
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680046
    reference: chr 4
allele count: 2
allele frequency: 1.667834150572067e-5
allele num: 119916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.148A>G
  hgvsp: ENSP00000424556.1:p.Met50Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.340A>G
  hgvsp: ENSP00000384616.2:p.Met114Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.340A>G
  hgvsp: ENSP00000320234.4:p.Met114Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.148A>G
  hgvsp: ENSP00000425753.1:p.Met50Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-103A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+275A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+275A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+275A>G
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met114Val
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

4-680048-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680048
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680048
    reference: chr 4
allele count: 2
allele frequency: 1.668279336692136e-5
allele num: 119884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+273G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.146G>C
  hgvsp: ENSP00000424556.1:p.Arg49Pro
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+273G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.146G>C
  hgvsp: ENSP00000425753.1:p.Arg49Pro
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-105G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.338G>C
  hgvsp: ENSP00000320234.4:p.Arg113Pro
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.338G>C
  hgvsp: ENSP00000384616.2:p.Arg113Pro
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+273G>C
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7052
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg113Pro
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/4-680048-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680048
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680048
    reference: chr 4
allele count: 1
allele frequency: 8.341396683460679e-6
allele num: 119884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.146G>T
  hgvsp: ENSP00000425753.1:p.Arg49Leu
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+273G>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+273G>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.146G>T
  hgvsp: ENSP00000424556.1:p.Arg49Leu
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+273G>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-105G>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.338G>T
  hgvsp: ENSP00000384616.2:p.Arg113Leu
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.338G>T
  hgvsp: ENSP00000320234.4:p.Arg113Leu
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7052
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg113Leu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

4-680048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680048
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680048
    reference: chr 4
allele count: 2
allele frequency: 1.668279336692136e-5
allele num: 119884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.338G>A
  hgvsp: ENSP00000384616.2:p.Arg113His
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.146G>A
  hgvsp: ENSP00000425753.1:p.Arg49His
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+273G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-105G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+273G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.146G>A
  hgvsp: ENSP00000424556.1:p.Arg49His
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.338G>A
  hgvsp: ENSP00000320234.4:p.Arg113His
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+273G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg113His
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

4-680057-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680057
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680057
    reference: chr 4
allele count: 1
allele frequency: 8.349615082744685e-6
allele num: 119766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-114G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.137G>A
  hgvsp: ENSP00000424556.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.329G>A
  hgvsp: ENSP00000384616.2:p.Ser110Asn
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+264G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.137G>A
  hgvsp: ENSP00000425753.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+264G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+264G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.329G>A
  hgvsp: ENSP00000320234.4:p.Ser110Asn
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser110Asn
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-680059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680059
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680059
    reference: chr 4
allele count: 92
allele frequency: 7.683698865819233e-4
allele num: 119734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.135G>A
  hgvsp: ENST00000507165.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+262G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-116G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.327G>A
  hgvsp: ENST00000322224.4:c.327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+262G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.327G>A
  hgvsp: ENST00000404286.2:c.327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.135G>A
  hgvsp: ENST00000503156.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+262G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18440
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9829
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24829
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly109Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

4-680061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680061
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680061
    reference: chr 4
allele count: 2
allele frequency: 1.671290570578601e-5
allele num: 119668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.133G>A
  hgvsp: ENSP00000424556.1:p.Gly45Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-118G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+260G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.133G>A
  hgvsp: ENSP00000425753.1:p.Gly45Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.325G>A
  hgvsp: ENSP00000384616.2:p.Gly109Arg
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+260G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+260G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.325G>A
  hgvsp: ENSP00000320234.4:p.Gly109Arg
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43168
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly109Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

4-680073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680073
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680073
    reference: chr 4
allele count: 1
allele frequency: 8.379139294811638e-6
allele num: 119344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.121C>T
  hgvsp: ENST00000507165.1:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+248C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.313C>T
  hgvsp: ENST00000322224.4:c.313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.121C>T
  hgvsp: ENST00000503156.1:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-130C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+248C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.313C>T
  hgvsp: ENST00000404286.2:c.313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+248C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu105Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

4-680073-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680073
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680073
    reference: chr 4
allele count: 1
allele frequency: 8.379139294811638e-6
allele num: 119344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.313C>G
  hgvsp: ENSP00000384616.2:p.Leu105Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.121C>G
  hgvsp: ENSP00000424556.1:p.Leu41Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+248C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+248C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.313C>G
  hgvsp: ENSP00000320234.4:p.Leu105Val
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+248C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-130C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.121C>G
  hgvsp: ENSP00000425753.1:p.Leu41Val
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu105Val
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

4-680077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680077
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680077
    reference: chr 4
allele count: 4
allele frequency: 3.355817309305681e-5
allele num: 119196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.309G>A
  hgvsp: ENST00000404286.2:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.309G>A
  hgvsp: ENST00000322224.4:c.309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.117G>A
  hgvsp: ENST00000507165.1:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+244G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+244G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.117G>A
  hgvsp: ENST00000503156.1:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-134G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+244G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala103Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

4-680082-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680082
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680082
    reference: chr 4
allele count: 1
allele frequency: 8.412551526878102e-6
allele num: 118870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+239G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.112G>A
  hgvsp: ENSP00000424556.1:p.Gly38Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.112G>A
  hgvsp: ENSP00000425753.1:p.Gly38Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+239G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-139G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.304G>A
  hgvsp: ENSP00000384616.2:p.Gly102Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.304G>A
  hgvsp: ENSP00000320234.4:p.Gly102Ser
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+239G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly102Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-680083-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680083
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680084
    reference: chr 4
allele count: 1
allele frequency: 8.414250374434141e-6
allele num: 118846
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.110dupT
  hgvsp: ENSP00000424556.1:p.Ala39CysfsTer88
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+237dupT
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.302dupT
  hgvsp: ENSP00000384616.2:p.Ala103CysfsTer88
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.302dupT
  hgvsp: ENSP00000320234.4:p.Ala103CysfsTer88
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+237dupT
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+237dupT
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.110dupT
  hgvsp: ENSP00000425753.1:p.Ala39CysfsTer88
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-141dupT
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala103CysfsTer88
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

4-680084-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680084
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680084
    reference: chr 4
allele count: 1
allele frequency: 8.420627168311495e-6
allele num: 118756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.302T>C
  hgvsp: ENSP00000384616.2:p.Leu101Pro
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.110T>C
  hgvsp: ENSP00000425753.1:p.Leu37Pro
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-141T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+237T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+237T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.302T>C
  hgvsp: ENSP00000320234.4:p.Leu101Pro
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+237T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.110T>C
  hgvsp: ENSP00000424556.1:p.Leu37Pro
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu101Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

4-680095-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680095
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680095
    reference: chr 4
allele count: 2
allele frequency: 1.699062117711024e-5
allele num: 117712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-4G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-4G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+226G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+226G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-4G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-4G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+226G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-152G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40798
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 9.75e1
  variant carriers: 2
hgvs: c.295-4G>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

4-680096-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680096
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680096
    reference: chr 4
allele count: 74
allele frequency: 6.292195976395763e-4
allele num: 117606
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-5C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+225C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+225C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+225C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-5C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-5C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-5C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-153C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24058
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16593
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9649
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
hgvs: c.295-5C>T
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

4-680100-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680100
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680100
    reference: chr 4
allele count: 5
allele frequency: 4.279795939329613e-5
allele num: 116828
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-9T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+221T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+221T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-157T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-9T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-9T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+221T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-9T>C
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23553
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

4-680101-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680101
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680101
    reference: chr 4
allele count: 1
allele frequency: 8.583248931385508e-6
allele num: 116506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+220C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-10C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-158C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-10C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+220C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+220C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-10C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-10C>G
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-680102-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680102
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680102
    reference: chr 4
allele count: 1
allele frequency: 8.584280465611372e-6
allele num: 116492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-159C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+219C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-11C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-11C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+219C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+219C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-11C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-11C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9553
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

4-680106-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680106
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680105
    reference: chr 4
allele count: 1
allele frequency: 8.645134518293105e-6
allele num: 115672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+214delG
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-16delG
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-16delG
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-164delG
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+214delG
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-16delG
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+214delG
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-16delG
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: TC
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

4-680108-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680108
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680108
    reference: chr 4
allele count: 72
allele frequency: 6.246854882090614e-4
allele num: 115258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+213C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-17C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+213C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-17C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-17C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-165C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+213C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-17C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22058
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 13879
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

4-680112-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680112
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680112
    reference: chr 4
allele count: 1
allele frequency: 8.728440751344179e-6
allele num: 114568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-21T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+209T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-21T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-21T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+209T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-21T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+209T>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-169T>C
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6847
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33725
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

4-680115-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680115
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680115
    reference: chr 4
allele count: 5
allele frequency: 4.387042431474397e-5
allele num: 113972
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-24C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+206C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-24C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+206C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-172C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-24C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-24C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+206C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19934
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-680125-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680125
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680125
    reference: chr 4
allele count: 7
allele frequency: 6.266449429753102e-5
allele num: 111706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+196G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-34G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+196G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+196G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-182G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-34G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-34G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-34G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11010
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

4-680130-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680130
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680130
    reference: chr 4
allele count: 2
allele frequency: 1.819935574280671e-5
allele num: 109894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-39G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+191G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-39G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-39G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-39G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+191G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+191G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.433-187G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5932
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4196
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

4-680134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680134
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680134
    reference: chr 4
allele count: 1
allele frequency: 9.206068640447784e-6
allele num: 108624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+187G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+187G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-43G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-43G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-43G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-43G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+187G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+187G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6518
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

4-680137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680137
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680137
    reference: chr 4
allele count: 1
allele frequency: 9.304575990472114e-6
allele num: 107474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+184G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-46G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+184G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+184G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-46G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+184G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-46G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-46G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13721
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10848
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6803
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

4-680138-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680138
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680138
    reference: chr 4
allele count: 1
allele frequency: 9.377344336084021e-6
allele num: 106640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+183G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+183G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-47G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-47G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-47G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-47G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+183G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+183G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10349
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

4-680142-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680142
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680142
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 103404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-51C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-51C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+179C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+179C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-51C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+179C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-51C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+179C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10912
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6037
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8440
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4449
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

4-680142-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680142
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680142
    reference: chr 4
allele count: 1
allele frequency: 9.670805771536885e-6
allele num: 103404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+179C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.103-51C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+179C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.295-51C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.103-51C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+179C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.295-51C>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+179C>G
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7878
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4449
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6037
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8440
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

4-680270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680270
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680270
    reference: chr 4
allele count: 2
allele frequency: 1.777493378837164e-5
allele num: 112518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+51C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+51C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+51C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+51C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+51C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+51C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+51C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+51C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9678
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5850
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-680275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680275
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680275
    reference: chr 4
allele count: 11
allele frequency: 9.772565742714997e-5
allele num: 112560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+46G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+46G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+46G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+46G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+46G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+46G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+46G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+46G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9715
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16949
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11936
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

4-680278-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680278
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680278
    reference: chr 4
allele count: 3
allele frequency: 2.658914453858971e-5
allele num: 112828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+43G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+43G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+43G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+43G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+43G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+43G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+43G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+43G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16941
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4301
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

4-680284-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680284
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680284
    reference: chr 4
allele count: 1
allele frequency: 8.838919530476594e-6
allele num: 113136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+37A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+37A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+37A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+37A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+37A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+37A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+37A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+37A>G
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7936
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4303
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

4-680289-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680289
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680289
    reference: chr 4
allele count: 1
allele frequency: 8.83158173628897e-6
allele num: 113230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+32G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+32G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+32G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+32G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+32G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+32G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+32G>C
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+32G>C
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16934
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

4-680289-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680289
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680289
    reference: chr 4
allele count: 7
allele frequency: 6.182107215402279e-5
allele num: 113230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+32G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+32G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+32G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+32G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+32G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+32G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+32G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+32G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7938
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

4-680290-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680290
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680290
    reference: chr 4
allele count: 5
allele frequency: 4.404432620989764e-5
allele num: 113522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+31C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+31C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+31C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+31C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+31C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+31C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+31C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+31C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3810
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff

4-680293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680293
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680293
    reference: chr 4
allele count: 1
allele frequency: 8.78394996662099e-6
allele num: 113844
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+28C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+28C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+28C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+28C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+28C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+28C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+28C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+28C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4319
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

4-680294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680294
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680294
    reference: chr 4
allele count: 9
allele frequency: 7.911253318331253e-5
allele num: 113762
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+27G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+27G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+27G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+27G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+27G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+27G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+27G>A
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+27G>A
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16930
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3280
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14121
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-680295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680295
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680295
    reference: chr 4
allele count: 1
allele frequency: 8.752735229759301e-6
allele num: 114250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+26C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+26C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+26C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+26C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+26C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+26C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+26C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+26C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14569
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

4-680301-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680301
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680301
    reference: chr 4
allele count: 1
allele frequency: 8.687493484379887e-6
allele num: 115108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+20A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+20A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+20A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+20A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+20A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+20A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+20A>G
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+20A>G
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

4-680305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680305
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680305
    reference: chr 4
allele count: 1
allele frequency: 8.658458448057908e-6
allele num: 115494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+16C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+16C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+16C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+16C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+16C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+16C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+16C>T
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+16C>T
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16925
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15940
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

4-680306-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 680306
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 680307
    reference: chr 4
allele count: 1
allele frequency: 8.654262224145391e-6
allele num: 115550
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000423204
  ensembl transcript: ENST00000515118
  gene symbol: MFSD7
  hgvsc: ENST00000515118.1:c.294+14dupC
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000384616
  ensembl transcript: ENST00000404286
  gene symbol: MFSD7
  hgvsc: ENST00000404286.2:c.294+14dupC
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000424556
  ensembl transcript: ENST00000507165
  gene symbol: MFSD7
  hgvsc: ENST00000507165.1:c.102+14dupC
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000307545
  ensembl transcript: ENST00000347950
  gene symbol: MFSD7
  hgvsc: ENST00000347950.5:c.228+14dupC
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000320234
  ensembl transcript: ENST00000322224
  gene symbol: MFSD7
  hgvsc: ENST00000322224.4:c.294+14dupC
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425038
  ensembl transcript: ENST00000512249
  gene symbol: MFSD7
  hgvsc: ENST00000512249.1:c.294+14dupC
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl transcript: ENST00000513740
  gene symbol: MFSD7
  hgvsc: ENST00000513740.1:n.432+14dupC
  variant of: http://identifiers.org/hgnc/26177
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169026
  ensembl protein: ENSP00000425753
  ensembl transcript: ENST00000503156
  gene symbol: MFSD7
  hgvsc: ENST00000503156.1:c.102+14dupC
  variant of: http://identifiers.org/hgnc/26177
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1951
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36789
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541354542371836e-5
allele num: 64878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.928514694201747e-5
allele num: 10072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.67e-1

QD
type: SiteQuality
SIO_000300: 1.846e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

FS
type: SiteQuality
SIO_000300: 1.164e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

DP
type: SiteQuality
SIO_000300: 1.608503e6

GenotypeQuality
all individuals: 262
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6774
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.043e0

MQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.79e-1

DP
type: SiteQuality
SIO_000300: 1.609812e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.854e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.931e1

QD
type: SiteQuality
SIO_000300: 7.19e0

VQSLOD
type: SiteQuality
SIO_000300: -1.583e0

GenotypeQuality
all individuals: 734
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6789
bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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MQ
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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FS
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
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allele frequency: 9.916699722332408e-5
allele num: 10084
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64944
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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MQ
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BaseQRankSum
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QD
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DP
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MQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16480
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11456
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.610419548178884e-5
allele num: 65070
num of homozygotes: 0

BaseQRankSum
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QD
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ClippingRankSum
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SIO_000300: -2.8e-2

MQRankSum
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FS
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DP
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InbreedingCoeff
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SIO_000300: -3.0e-4

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

African
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allele frequency: 2.960915909988156e-4
allele num: 10132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65078
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e0

DP
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SIO_000300: 1.63599e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534401276621862e-5
allele num: 65172
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

DP
type: SiteQuality
SIO_000300: 1.642483e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.821e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 2.32e0

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65332
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Latino
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allele frequency: 8.698677800974252e-5
allele num: 11496
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African
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allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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FS
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 65356
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East Asian
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Other
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allele frequency: 0.0e0
allele num: 888
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6516
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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MQ
type: SiteQuality
SIO_000300: 5.304e1

VQSLOD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 1.985096506230149e-4
allele num: 65488
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African
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Latino
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South Asian
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allele frequency: 2.424536307431204e-4
allele num: 16498
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele num: 890
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele num: 10224
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South Asian
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Other
type: Population
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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MQRankSum
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DP
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ReadPosRankSum
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QD
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VQSLOD
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FS
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MQ
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525739220652406e-5
allele num: 65542
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.076e0

FS
type: SiteQuality
SIO_000300: 6.204e0

MQRankSum
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SIO_000300: -6.706e0

DP
type: SiteQuality
SIO_000300: 1.667236e6

QD
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MQ
type: SiteQuality
SIO_000300: 5.4e1

VQSLOD
type: SiteQuality
SIO_000300: -5.251e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.185e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.524855138761818e-5
allele num: 65580
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.214e0

MQ
type: SiteQuality
SIO_000300: 5.739e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
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FS
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SIO_000300: 2.799e0

MQRankSum
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SIO_000300: -1.001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.78e-1

QD
type: SiteQuality
SIO_000300: 5.23e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.574565416285453e-5
allele num: 65580
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

FS
type: SiteQuality
SIO_000300: 7.04e0

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

DP
type: SiteQuality
SIO_000300: 1.668715e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.264e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 6.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523507724184162e-5
allele num: 65638
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: -1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

FS
type: SiteQuality
SIO_000300: 1.122e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.997e0

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

DP
type: SiteQuality
SIO_000300: 1.670159e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 1386
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735207357279195e-4
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.148e-1

QD
type: SiteQuality
SIO_000300: 1.55e1

DP
type: SiteQuality
SIO_000300: 1.670449e6

FS
type: SiteQuality
SIO_000300: 9.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 5
allele frequency: 4.873294346978557e-4
allele num: 10260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.338018393197987e-4
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.040437823046519e-4
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 93
allele frequency: 1.415826812410559e-3
allele num: 65686
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.133e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65670
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
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African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ClippingRankSum
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SIO_000300: 5.51e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11530
num of homozygotes: 0

East Asian
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allele frequency: 1.160900859066636e-4
allele num: 8614
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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South Asian
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allele frequency: 2.423361201987156e-4
allele num: 16506
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FS
type: SiteQuality
SIO_000300: 1.113e0

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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BaseQRankSum
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DP
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.009e0

MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 9.72951936174353e-5
allele num: 10278
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South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
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European (Non-Finnish)
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allele count: 5
allele frequency: 7.611740348313238e-5
allele num: 65688
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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DP
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.522579859313621e-5
allele num: 65678
num of homozygotes: 0

East Asian
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South Asian
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ClippingRankSum
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QD
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

MQ
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SIO_000300: 5.97e1

FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.522858100082234e-5
allele num: 65666
num of homozygotes: 0

South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

MQ
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ClippingRankSum
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QD
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FS
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DP
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InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

VQSLOD
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MQRankSum
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SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.735202492211838e-5
allele num: 10272
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.045808966861598e-5
allele num: 65664
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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BaseQRankSum
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SIO_000300: 6.45e-1

MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
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allele num: 65656
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African
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.89e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
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DP
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.877e1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 65650
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -7.0e-4

VQSLOD
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FS
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ClippingRankSum
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 65628
num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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South Asian
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FS
type: SiteQuality
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MQ
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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East Asian
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African
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Other
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European (Non-Finnish)
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allele num: 65626
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MQRankSum
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MQ
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FS
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VQSLOD
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ClippingRankSum
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DP
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QD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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Other
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FS
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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QD
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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Other
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Latino
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African
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South Asian
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65516
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
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DP
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VQSLOD
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ClippingRankSum
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SIO_000300: -5.9e-2

MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.053621595211921e-5
allele num: 65496
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: 1.26e-1

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 3.29e-1

MQ
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.161710037174721e-4
allele num: 8608
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: 1.26e-1

QD
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DP
type: SiteQuality
SIO_000300: 1.66996e6

MQRankSum
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SIO_000300: -1.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.750390015600624e-5
allele num: 10256
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.526810797605961e-5
allele num: 65496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.66996e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.528911720637251e-5
allele num: 65406
num of homozygotes: 0

African
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South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
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FS
type: SiteQuality
SIO_000300: 3.965e0

DP
type: SiteQuality
SIO_000300: 1.667586e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.548e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.42e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 3.908540160250146e-4
allele num: 10234
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 73
allele frequency: 1.116378651169904e-3
allele num: 65390
num of homozygotes: 0

European (Finnish)
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allele count: 4
allele frequency: 6.071645415907711e-4
allele num: 6588
num of homozygotes: 0

Latino
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allele count: 11
allele frequency: 9.537020981446159e-4
allele num: 11534
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South Asian
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allele frequency: 0.0e0
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Other
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MQRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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allele num: 8604
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

African
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allele count: 0
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Latino
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.530268715186387e-5
allele num: 65348
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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Latino
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African
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.534730961662421e-5
allele num: 65158
num of homozygotes: 0

Other
type: Population
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DP
type: SiteQuality
SIO_000300: 1.661238e6

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: 7.86e-1

ReadPosRankSum
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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African
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allele frequency: 9.832841691248771e-5
allele num: 10170
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65158
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

MQ
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FS
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.86e-1

DP
type: SiteQuality
SIO_000300: 1.661238e6

QD
type: SiteQuality
SIO_000300: 1.593e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.448e0

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6952
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.490807540144287e-4
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53666482266888e-5
allele num: 65076
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.659053e6

QD
type: SiteQuality
SIO_000300: 1.156e1

FS
type: SiteQuality
SIO_000300: 5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.112e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

GenotypeQuality
all individuals: 1440
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1881
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variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.01e-1

DP
type: SiteQuality
SIO_000300: 1.654056e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.721e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.49e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 6914
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 2233
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.359e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.153e0

VQSLOD
type: SiteQuality
SIO_000300: 4.85e0

DP
type: SiteQuality
SIO_000300: 1.654074e6

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.277e1

GenotypeQuality
all individuals: 338
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variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 790
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variant carriers: 0

GenotypeQuality
all individuals: 1881
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GenotypeQuality
all individuals: 615
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542353013757789e-5
allele num: 64836
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.45e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.144e1

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.242e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.651868e6

MQRankSum
type: SiteQuality
SIO_000300: 6.47e-1

GenotypeQuality
all individuals: 315
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
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variant carriers: 0

GenotypeQuality
all individuals: 145
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 456
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GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 6699
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variant carriers: 0

GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 1326
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variant carriers: 0

GenotypeQuality
all individuals: 1996
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variant carriers: 0

GenotypeQuality
all individuals: 786
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variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.008435428800964e-4
allele num: 9958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 7.476e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.631117e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

QD
type: SiteQuality
SIO_000300: 1.465e1

GenotypeQuality
all individuals: 612
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variant carriers: 0

GenotypeQuality
all individuals: 40739
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6675
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variant carriers: 0

GenotypeQuality
all individuals: 379
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 1984
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GenotypeQuality
all individuals: 2293
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variant carriers: 72

GenotypeQuality
all individuals: 334
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GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 2

African
type: Population
allele count: 66
allele frequency: 6.626506024096385e-3
allele num: 9960
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.733624454148471e-5
allele num: 11450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.486943546381497e-4
allele num: 16084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.115070712105165e-5
allele num: 64204
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.325e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

FS
type: SiteQuality
SIO_000300: 1.359e0

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.672e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

DP
type: SiteQuality
SIO_000300: 1.628999e6

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 500
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1798
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variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 9.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.158958807177155e-4
allele num: 15828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63856
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 1.608711e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

FS
type: SiteQuality
SIO_000300: 4.593e0

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.51e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 1.105e1

GenotypeQuality
all individuals: 1800
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
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variant carriers: 0

GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 590
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GenotypeQuality
all individuals: 581
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GenotypeQuality
all individuals: 2224
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6415
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GenotypeQuality
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GenotypeQuality
all individuals: 786
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GenotypeQuality
all individuals: 1309
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.761170492377782e-5
allele num: 11414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.600096e6

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.271e0

QD
type: SiteQuality
SIO_000300: 1.056e1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
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variant carriers: 0

GenotypeQuality
all individuals: 39006
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variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 6401
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variant carriers: 0

GenotypeQuality
all individuals: 90
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GenotypeQuality
all individuals: 1308
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GenotypeQuality
all individuals: 1961
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variant carriers: 0

GenotypeQuality
all individuals: 582
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variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 3912
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15716
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.761170492377782e-5
allele num: 11414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.599996e6

QD
type: SiteQuality
SIO_000300: 1.534e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.412e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 785
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variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579679009225326e-5
allele num: 63304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.632e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.232e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.395e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 1.1911e1

MQ
type: SiteQuality
SIO_000300: 6.131e1

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

DP
type: SiteQuality
SIO_000300: 1.572213e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.485084306095979e-5
allele num: 15420
num of homozygotes: 0

Latino
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allele count: 13
allele frequency: 1.146991353449797e-3
allele num: 11334
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.76678445229682e-3
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 4.116073266104137e-3
allele num: 9718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.170778108947936e-5
allele num: 63076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.190476190476191e-3
allele num: 840
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.95e0

QD
type: SiteQuality
SIO_000300: 1.405e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

DP
type: SiteQuality
SIO_000300: 1.562026e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5927624872579e-5
allele num: 62784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.786e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

QD
type: SiteQuality
SIO_000300: 1.859e1

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.525686e6

VQSLOD
type: SiteQuality
SIO_000300: -5.376e0

FS
type: SiteQuality
SIO_000300: 2.4427e1

MQ
type: SiteQuality
SIO_000300: 6.1e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.601383595426448e-5
allele num: 62446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15110
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.561253561253561e-4
allele num: 8424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.880994671403197e-5
allele num: 11260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

DP
type: SiteQuality
SIO_000300: 1.496833e6

QD
type: SiteQuality
SIO_000300: 1.421e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.701e0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.49e-1

FS
type: SiteQuality
SIO_000300: 6.685e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9424
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.197318007662835e-4
allele num: 8352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.776763891152029e-5
allele num: 61370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14478
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

VQSLOD
type: SiteQuality
SIO_000300: 8.159999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.37e-1

FS
type: SiteQuality
SIO_000300: 5.548e0

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 1.360901e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1957
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2214
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.304801877127466e-5
allele num: 60518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11036
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

FS
type: SiteQuality
SIO_000300: 2.328e0

VQSLOD
type: SiteQuality
SIO_000300: 6.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

DP
type: SiteQuality
SIO_000300: 1.299761e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.670787943594199e-5
allele num: 59852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.412e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

FS
type: SiteQuality
SIO_000300: 4.536e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.038e0

DP
type: SiteQuality
SIO_000300: 1.276474e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.231223836493475e-4
allele num: 8122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

QD
type: SiteQuality
SIO_000300: 1.435e1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

DP
type: SiteQuality
SIO_000300: 1.262873e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

FS
type: SiteQuality
SIO_000300: 1.984e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.427e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 770
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.132246376811594e-4
allele num: 8832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1

DP
type: SiteQuality
SIO_000300: 1.25641e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.716e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.015e0

MQRankSum
type: SiteQuality
SIO_000300: -1.046e0

GenotypeQuality
all individuals: 553
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2634
bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
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GenotypeQuality
all individuals: 1235
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13022
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.542e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.213e0

DP
type: SiteQuality
SIO_000300: 1.24701e6

FS
type: SiteQuality
SIO_000300: 9.204000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6941
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.679311933650745e-5
allele num: 13022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10518
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.213e0

FS
type: SiteQuality
SIO_000300: 9.204000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.24701e6

QD
type: SiteQuality
SIO_000300: 1.542e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
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variant carriers: 0

GenotypeQuality
all individuals: 11524
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1170
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variant carriers: 0

GenotypeQuality
all individuals: 2599
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.208007185936096e-5
allele num: 62344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.284e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

DP
type: SiteQuality
SIO_000300: 2.083468e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

GenotypeQuality
all individuals: 398
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
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variant carriers: 0

GenotypeQuality
all individuals: 1892
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variant carriers: 0

GenotypeQuality
all individuals: 3817
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variant carriers: 0

GenotypeQuality
all individuals: 426
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 698
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 390
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variant carriers: 1

GenotypeQuality
all individuals: 1131
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variant carriers: 0

GenotypeQuality
all individuals: 5882
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.168472487784151e-3
allele num: 9414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

FS
type: SiteQuality
SIO_000300: 1.992e0

MQ
type: SiteQuality
SIO_000300: 5.852e1

DP
type: SiteQuality
SIO_000300: 2.084773e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.739e0

QD
type: SiteQuality
SIO_000300: 1.265e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.25e-1

GenotypeQuality
all individuals: 12359
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 1107
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variant carriers: 0

GenotypeQuality
all individuals: 700
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GenotypeQuality
all individuals: 3062
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variant carriers: 0

GenotypeQuality
all individuals: 433
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variant carriers: 0

GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 1539
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variant carriers: 0

GenotypeQuality
all individuals: 1891
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variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5905
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.172588832487309e-4
allele num: 9456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.847e1

FS
type: SiteQuality
SIO_000300: 7.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.426e0

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.465e0

DP
type: SiteQuality
SIO_000300: 2.087434e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.43e-1

QD
type: SiteQuality
SIO_000300: 7.83e0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
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variant carriers: 0

GenotypeQuality
all individuals: 1890
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GenotypeQuality
all individuals: 12956
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16939
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
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variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.597546169084287e-5
allele num: 62596
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.435e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.503e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.093801e6

GenotypeQuality
all individuals: 3363
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5934
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variant carriers: 0

GenotypeQuality
all individuals: 1061
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variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.192748091603053e-4
allele num: 8384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13852
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.307e1

DP
type: SiteQuality
SIO_000300: 2.099974e6

GenotypeQuality
all individuals: 902
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3363
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
all individuals: 13308
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2630
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3805
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16934
bin: 9.75e1
variant carriers: 7

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.580991313234543e-5
allele num: 62624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13852
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.762705923589205e-5
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.307e1

DP
type: SiteQuality
SIO_000300: 2.099974e6

GenotypeQuality
all individuals: 13766
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16931
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3157
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
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GenotypeQuality
all individuals: 1013
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2645
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.123048094940662e-4
allele num: 9606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.186133945071051e-5
allele num: 62772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

VQSLOD
type: SiteQuality
SIO_000300: -1.11e-1

FS
type: SiteQuality
SIO_000300: 1.0679e1

QD
type: SiteQuality
SIO_000300: 1.339e1

DP
type: SiteQuality
SIO_000300: 2.104692e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6080
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16927
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3815
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2656
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590027348470394e-5
allele num: 62892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.114e1

FS
type: SiteQuality
SIO_000300: 3.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.46e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

DP
type: SiteQuality
SIO_000300: 2.109294e6

GenotypeQuality
all individuals: 2654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6064
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1889
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.586286042174724e-4
allele num: 13942
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.628351147713334e-4
allele num: 11414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.031991744066047e-4
allele num: 9690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

FS
type: SiteQuality
SIO_000300: 5.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.324e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 2.111928e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

GenotypeQuality
all individuals: 6130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3819
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3232
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16922
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.063144511936714e-5
allele num: 14158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63062
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 4.711e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.116488e6

QD
type: SiteQuality
SIO_000300: 1.186e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.86e-1

GenotypeQuality
all individuals: 3831
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15495
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6197
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16924
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3160
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576093809103518e-5
allele num: 63448
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.494e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.129838e6

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.083e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

GenotypeQuality
all individuals: 2686
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3830
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-2

DP
type: SiteQuality
SIO_000300: 2.135499e6

MQ
type: SiteQuality
SIO_000300: 5.909e1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.8e0

QD
type: SiteQuality
SIO_000300: 1.273e1

VQSLOD
type: SiteQuality
SIO_000300: -1.185e0