http://identifiers.org/exac.variant/4-106158377-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158377
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158377
    reference: chr 4
allele count: 3
allele frequency: 2.479011039862498e-5
allele num: 121016
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3278C>A
  hgvsp: ENSP00000442788.1:p.Thr1093Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3341C>A
  hgvsp: ENSP00000425443.1:p.Thr1114Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3278C>A
  hgvsp: ENSP00000391448.2:p.Thr1093Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3278C>A
  hgvsp: ENSP00000306705.2:p.Thr1093Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3278C>A
  hgvsp: ENSP00000265149.5:p.Thr1093Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3278C>A
  hgvsp: ENSP00000378245.1:p.Thr1093Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3278C>A
  hgvsp: ENSP00000442867.1:p.Thr1093Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3278C>A
  hgvsp: ENSP00000369351.4:p.Thr1093Asn
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr1093Asn
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

4-106158383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158383
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158383
    reference: chr 4
allele count: 23
allele frequency: 1.901392149730498e-4
allele num: 120964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3284G>A
  hgvsp: ENSP00000378245.1:p.Arg1095Lys
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3284G>A
  hgvsp: ENSP00000265149.5:p.Arg1095Lys
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3284G>A
  hgvsp: ENSP00000442788.1:p.Arg1095Lys
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3284G>A
  hgvsp: ENSP00000369351.4:p.Arg1095Lys
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3284G>A
  hgvsp: ENSP00000442867.1:p.Arg1095Lys
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3284G>A
  hgvsp: ENSP00000391448.2:p.Arg1095Lys
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3347G>A
  hgvsp: ENSP00000425443.1:p.Arg1116Lys
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3284G>A
  hgvsp: ENSP00000306705.2:p.Arg1095Lys
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg1095Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-106158385-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158385
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158384
    reference: chr 4
allele count: 1
allele frequency: 8.266512358435975e-6
allele num: 120970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3287delC
  hgvsp: ENSP00000391448.2:p.Thr1096LysfsTer10
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3287delC
  hgvsp: ENSP00000378245.1:p.Thr1096LysfsTer10
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3287delC
  hgvsp: ENSP00000442788.1:p.Thr1096LysfsTer10
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3287delC
  hgvsp: ENSP00000442867.1:p.Thr1096LysfsTer10
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3287delC
  hgvsp: ENSP00000306705.2:p.Thr1096LysfsTer10
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3287delC
  hgvsp: ENSP00000369351.4:p.Thr1096LysfsTer10
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3350delC
  hgvsp: ENSP00000425443.1:p.Thr1117LysfsTer10
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3287delC
  hgvsp: ENSP00000265149.5:p.Thr1096LysfsTer10
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2867
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr1096LysfsTer10
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: AC
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-106158395-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158395
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158395
    reference: chr 4
allele count: 1
allele frequency: 8.269656974628692e-6
allele num: 120924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3296C>T
  hgvsp: ENSP00000442867.1:p.Ser1099Phe
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3296C>T
  hgvsp: ENSP00000378245.1:p.Ser1099Phe
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3296C>T
  hgvsp: ENSP00000369351.4:p.Ser1099Phe
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3296C>T
  hgvsp: ENSP00000265149.5:p.Ser1099Phe
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3296C>T
  hgvsp: ENSP00000306705.2:p.Ser1099Phe
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3359C>T
  hgvsp: ENSP00000425443.1:p.Ser1120Phe
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3296C>T
  hgvsp: ENSP00000391448.2:p.Ser1099Phe
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3296C>T
  hgvsp: ENSP00000442788.1:p.Ser1099Phe
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser1099Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

4-106158399-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158399
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158399
    reference: chr 4
allele count: 1
allele frequency: 8.273625337150233e-6
allele num: 120866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3300T>G
  hgvsp: ENST00000413648.2:c.3300T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3300T>G
  hgvsp: ENST00000545826.1:c.3300T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3300T>G
  hgvsp: ENST00000380013.4:c.3300T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3363T>G
  hgvsp: ENST00000513237.1:c.3363T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3300T>G
  hgvsp: ENST00000540549.1:c.3300T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3300T>G
  hgvsp: ENST00000394764.1:c.3300T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3300T>G
  hgvsp: ENST00000265149.5:c.3300T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3300T>G
  hgvsp: ENST00000305737.2:c.3300T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val1100Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

4-106158400-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158400
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158400
    reference: chr 4
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3301C>G
  hgvsp: ENSP00000391448.2:p.Leu1101Val
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3301C>G
  hgvsp: ENSP00000442788.1:p.Leu1101Val
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3301C>G
  hgvsp: ENSP00000442867.1:p.Leu1101Val
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3364C>G
  hgvsp: ENSP00000425443.1:p.Leu1122Val
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3301C>G
  hgvsp: ENSP00000265149.5:p.Leu1101Val
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3301C>G
  hgvsp: ENSP00000369351.4:p.Leu1101Val
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3301C>G
  hgvsp: ENSP00000378245.1:p.Leu1101Val
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3301C>G
  hgvsp: ENSP00000306705.2:p.Leu1101Val
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu1101Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/4-106158402-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158402
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158403
    reference: chr 4
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3305dupA
  hgvsp: ENSP00000265149.5:p.Asn1102LysfsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3305dupA
  hgvsp: ENSP00000378245.1:p.Asn1102LysfsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3368dupA
  hgvsp: ENSP00000425443.1:p.Asn1123LysfsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3305dupA
  hgvsp: ENSP00000391448.2:p.Asn1102LysfsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3305dupA
  hgvsp: ENSP00000369351.4:p.Asn1102LysfsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3305dupA
  hgvsp: ENSP00000442867.1:p.Asn1102LysfsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3305dupA
  hgvsp: ENSP00000442788.1:p.Asn1102LysfsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3305dupA
  hgvsp: ENSP00000306705.2:p.Asn1102LysfsTer2
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn1102LysfsTer2
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

4-106158407-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158407
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158408
    reference: chr 4
allele count: 1
allele frequency: 8.274857672448034e-6
allele num: 120848
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3312dupT
  hgvsp: ENSP00000369351.4:p.Ile1105TyrfsTer25
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3312dupT
  hgvsp: ENSP00000265149.5:p.Ile1105TyrfsTer25
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3312dupT
  hgvsp: ENSP00000391448.2:p.Ile1105TyrfsTer25
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3375dupT
  hgvsp: ENSP00000425443.1:p.Ile1126TyrfsTer25
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3312dupT
  hgvsp: ENSP00000306705.2:p.Ile1105TyrfsTer25
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3312dupT
  hgvsp: ENSP00000442788.1:p.Ile1105TyrfsTer25
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3312dupT
  hgvsp: ENSP00000442867.1:p.Ile1105TyrfsTer25
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3312dupT
  hgvsp: ENSP00000378245.1:p.Ile1105TyrfsTer25
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile1105TyrfsTer25
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

4-106158407-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158407
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158406
    reference: chr 4
allele count: 3
allele frequency: 2.48245730173441e-5
allele num: 120848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3312delT
  hgvsp: ENSP00000391448.2:p.Phe1104LeufsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3312delT
  hgvsp: ENSP00000442867.1:p.Phe1104LeufsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3375delT
  hgvsp: ENSP00000425443.1:p.Phe1125LeufsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3312delT
  hgvsp: ENSP00000378245.1:p.Phe1104LeufsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3312delT
  hgvsp: ENSP00000306705.2:p.Phe1104LeufsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3312delT
  hgvsp: ENSP00000369351.4:p.Phe1104LeufsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3312delT
  hgvsp: ENSP00000265149.5:p.Phe1104LeufsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3312delT
  hgvsp: ENSP00000442788.1:p.Phe1104LeufsTer2
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 23112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3684
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe1104LeufsTer2
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: AT
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

4-106158414-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158414
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158414
    reference: chr 4
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3315A>G
  hgvsp: ENSP00000378245.1:p.Ile1105Met
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3315A>G
  hgvsp: ENSP00000369351.4:p.Ile1105Met
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3315A>G
  hgvsp: ENSP00000306705.2:p.Ile1105Met
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3315A>G
  hgvsp: ENSP00000442788.1:p.Ile1105Met
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3315A>G
  hgvsp: ENSP00000265149.5:p.Ile1105Met
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3378A>G
  hgvsp: ENSP00000425443.1:p.Ile1126Met
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3315A>G
  hgvsp: ENSP00000442867.1:p.Ile1105Met
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3315A>G
  hgvsp: ENSP00000391448.2:p.Ile1105Met
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile1105Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-106158419-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158419
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158419
    reference: chr 4
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3320C>A
  hgvsp: ENSP00000306705.2:p.Ser1107Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3320C>A
  hgvsp: ENSP00000442867.1:p.Ser1107Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3320C>A
  hgvsp: ENSP00000369351.4:p.Ser1107Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3320C>A
  hgvsp: ENSP00000378245.1:p.Ser1107Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3320C>A
  hgvsp: ENSP00000391448.2:p.Ser1107Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3320C>A
  hgvsp: ENSP00000442788.1:p.Ser1107Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3383C>A
  hgvsp: ENSP00000425443.1:p.Ser1128Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3320C>A
  hgvsp: ENSP00000265149.5:p.Ser1107Ter
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20665
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser1107Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-106158427-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158427
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158427
    reference: chr 4
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3328A>C
  hgvsp: ENSP00000306705.2:p.Lys1110Gln
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3391A>C
  hgvsp: ENSP00000425443.1:p.Lys1131Gln
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3328A>C
  hgvsp: ENSP00000265149.5:p.Lys1110Gln
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3328A>C
  hgvsp: ENSP00000391448.2:p.Lys1110Gln
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3328A>C
  hgvsp: ENSP00000369351.4:p.Lys1110Gln
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3328A>C
  hgvsp: ENSP00000442788.1:p.Lys1110Gln
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3328A>C
  hgvsp: ENSP00000442867.1:p.Lys1110Gln
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3328A>C
  hgvsp: ENSP00000378245.1:p.Lys1110Gln
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys1110Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

4-106158431-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158431
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158431
    reference: chr 4
allele count: 1
allele frequency: 8.292974192264313e-6
allele num: 120584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3332T>A
  hgvsp: ENSP00000378245.1:p.Leu1111Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3332T>A
  hgvsp: ENSP00000391448.2:p.Leu1111Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3332T>A
  hgvsp: ENSP00000369351.4:p.Leu1111Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3332T>A
  hgvsp: ENSP00000265149.5:p.Leu1111Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3395T>A
  hgvsp: ENSP00000425443.1:p.Leu1132Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3332T>A
  hgvsp: ENSP00000306705.2:p.Leu1111Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3332T>A
  hgvsp: ENSP00000442867.1:p.Leu1111Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3332T>A
  hgvsp: ENSP00000442788.1:p.Leu1111Ter
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu1111Ter
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-106158432-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158432
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158431
    reference: chr 4
allele count: 1
allele frequency: 8.292974192264313e-6
allele num: 120584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3397delC
  hgvsp: ENSP00000425443.1:p.Leu1133Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3334delC
  hgvsp: ENSP00000306705.2:p.Leu1112Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3334delC
  hgvsp: ENSP00000378245.1:p.Leu1112Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3334delC
  hgvsp: ENSP00000391448.2:p.Leu1112Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3334delC
  hgvsp: ENSP00000369351.4:p.Leu1112Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3334delC
  hgvsp: ENSP00000442867.1:p.Leu1112Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3334delC
  hgvsp: ENSP00000265149.5:p.Leu1112Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3334delC
  hgvsp: ENSP00000442788.1:p.Leu1112Ter
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37565
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu1112Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: AC
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

4-106158436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158436
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158436
    reference: chr 4
allele count: 2
allele frequency: 1.659723490066555e-5
allele num: 120502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3337G>A
  hgvsp: ENSP00000391448.2:p.Asp1113Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3337G>A
  hgvsp: ENSP00000442867.1:p.Asp1113Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3337G>A
  hgvsp: ENSP00000265149.5:p.Asp1113Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3337G>A
  hgvsp: ENSP00000369351.4:p.Asp1113Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3337G>A
  hgvsp: ENSP00000378245.1:p.Asp1113Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3337G>A
  hgvsp: ENSP00000442788.1:p.Asp1113Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3337G>A
  hgvsp: ENSP00000306705.2:p.Asp1113Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3400G>A
  hgvsp: ENSP00000425443.1:p.Asp1134Asn
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp1113Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

4-106158437-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158437
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158437
    reference: chr 4
allele count: 1
allele frequency: 8.304406317992327e-6
allele num: 120418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3338A>G
  hgvsp: ENSP00000391448.2:p.Asp1113Gly
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3338A>G
  hgvsp: ENSP00000442867.1:p.Asp1113Gly
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3338A>G
  hgvsp: ENSP00000306705.2:p.Asp1113Gly
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3338A>G
  hgvsp: ENSP00000265149.5:p.Asp1113Gly
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3338A>G
  hgvsp: ENSP00000378245.1:p.Asp1113Gly
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3401A>G
  hgvsp: ENSP00000425443.1:p.Asp1134Gly
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3338A>G
  hgvsp: ENSP00000442788.1:p.Asp1113Gly
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3338A>G
  hgvsp: ENSP00000369351.4:p.Asp1113Gly
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37428
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp1113Gly
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

4-106158440-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158440
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158440
    reference: chr 4
allele count: 1
allele frequency: 8.304820117596252e-6
allele num: 120412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3341C>G
  hgvsp: ENSP00000265149.5:p.Thr1114Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3404C>G
  hgvsp: ENSP00000425443.1:p.Thr1135Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3341C>G
  hgvsp: ENSP00000378245.1:p.Thr1114Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3341C>G
  hgvsp: ENSP00000442788.1:p.Thr1114Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3341C>G
  hgvsp: ENSP00000442867.1:p.Thr1114Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3341C>G
  hgvsp: ENSP00000391448.2:p.Thr1114Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3341C>G
  hgvsp: ENSP00000369351.4:p.Thr1114Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3341C>G
  hgvsp: ENSP00000306705.2:p.Thr1114Ser
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20471
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr1114Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

4-106158442-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158442
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158443
    reference: chr 4
allele count: 1
allele frequency: 8.305647840531562e-6
allele num: 120400
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3343_3344insT
  hgvsp: ENSP00000391448.2:p.Pro1115LeufsTer15
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3343_3344insT
  hgvsp: ENSP00000442867.1:p.Pro1115LeufsTer15
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3343_3344insT
  hgvsp: ENSP00000369351.4:p.Pro1115LeufsTer15
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3343_3344insT
  hgvsp: ENSP00000306705.2:p.Pro1115LeufsTer15
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3343_3344insT
  hgvsp: ENSP00000265149.5:p.Pro1115LeufsTer15
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3343_3344insT
  hgvsp: ENSP00000442788.1:p.Pro1115LeufsTer15
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3343_3344insT
  hgvsp: ENSP00000378245.1:p.Pro1115LeufsTer15
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3406_3407insT
  hgvsp: ENSP00000425443.1:p.Pro1136LeufsTer15
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20459
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8496
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro1115LeufsTer15
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

4-106158446-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158446
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158447
    reference: chr 4
allele count: 1
allele frequency: 8.306889734345666e-6
allele num: 120382
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3353dupA
  hgvsp: ENSP00000378245.1:p.Asn1118LysfsTer12
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3353dupA
  hgvsp: ENSP00000369351.4:p.Asn1118LysfsTer12
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3353dupA
  hgvsp: ENSP00000442867.1:p.Asn1118LysfsTer12
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3353dupA
  hgvsp: ENSP00000265149.5:p.Asn1118LysfsTer12
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3353dupA
  hgvsp: ENSP00000391448.2:p.Asn1118LysfsTer12
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3353dupA
  hgvsp: ENSP00000442788.1:p.Asn1118LysfsTer12
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3416dupA
  hgvsp: ENSP00000425443.1:p.Asn1139LysfsTer12
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3353dupA
  hgvsp: ENSP00000306705.2:p.Asn1118LysfsTer12
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23200
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn1118LysfsTer12
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

4-106158448-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158448
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158448
    reference: chr 4
allele count: 1
allele frequency: 8.306613725848521e-6
allele num: 120386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3349A>T
  hgvsp: ENSP00000391448.2:p.Lys1117Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3349A>T
  hgvsp: ENSP00000265149.5:p.Lys1117Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3349A>T
  hgvsp: ENSP00000369351.4:p.Lys1117Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3349A>T
  hgvsp: ENSP00000442867.1:p.Lys1117Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3349A>T
  hgvsp: ENSP00000306705.2:p.Lys1117Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3412A>T
  hgvsp: ENSP00000425443.1:p.Lys1138Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3349A>T
  hgvsp: ENSP00000442788.1:p.Lys1117Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3349A>T
  hgvsp: ENSP00000378245.1:p.Lys1117Ter
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8496
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys1117Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

4-106158452-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158452
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158453
    reference: chr 4
allele count: 1
allele frequency: 8.306613725848521e-6
allele num: 120386
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3356dupT
  hgvsp: ENSP00000306705.2:p.Leu1119PhefsTer11
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3356dupT
  hgvsp: ENSP00000265149.5:p.Leu1119PhefsTer11
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3356dupT
  hgvsp: ENSP00000442788.1:p.Leu1119PhefsTer11
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3356dupT
  hgvsp: ENSP00000378245.1:p.Leu1119PhefsTer11
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3419dupT
  hgvsp: ENSP00000425443.1:p.Leu1140PhefsTer11
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3356dupT
  hgvsp: ENSP00000391448.2:p.Leu1119PhefsTer11
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3356dupT
  hgvsp: ENSP00000369351.4:p.Leu1119PhefsTer11
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3356dupT
  hgvsp: ENSP00000442867.1:p.Leu1119PhefsTer11
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu1119PhefsTer11
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

4-106158476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158476
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158476
    reference: chr 4
allele count: 1
allele frequency: 8.303303053954863e-6
allele num: 120434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3377C>T
  hgvsp: ENSP00000369351.4:p.Thr1126Ile
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3377C>T
  hgvsp: ENSP00000378245.1:p.Thr1126Ile
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3377C>T
  hgvsp: ENSP00000442867.1:p.Thr1126Ile
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3377C>T
  hgvsp: ENSP00000306705.2:p.Thr1126Ile
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3377C>T
  hgvsp: ENSP00000442788.1:p.Thr1126Ile
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3377C>T
  hgvsp: ENSP00000391448.2:p.Thr1126Ile
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3440C>T
  hgvsp: ENSP00000425443.1:p.Thr1147Ile
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3377C>T
  hgvsp: ENSP00000265149.5:p.Thr1126Ile
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38032
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr1126Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

4-106158479-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158479
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158480
    reference: chr 4
allele count: 1
allele frequency: 8.303716743614441e-6
allele num: 120428
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3380_3381insT
  hgvsp: ENSP00000306705.2:p.Gln1127HisfsTer3
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3380_3381insT
  hgvsp: ENSP00000378245.1:p.Gln1127HisfsTer3
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3380_3381insT
  hgvsp: ENSP00000442788.1:p.Gln1127HisfsTer3
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3380_3381insT
  hgvsp: ENSP00000265149.5:p.Gln1127HisfsTer3
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3443_3444insT
  hgvsp: ENSP00000425443.1:p.Gln1148HisfsTer3
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3380_3381insT
  hgvsp: ENSP00000442867.1:p.Gln1127HisfsTer3
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3380_3381insT
  hgvsp: ENSP00000369351.4:p.Gln1127HisfsTer3
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3380_3381insT
  hgvsp: ENSP00000391448.2:p.Gln1127HisfsTer3
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln1127HisfsTer3
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

4-106158480-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158480
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158480
    reference: chr 4
allele count: 7
allele frequency: 5.812794791735867e-5
allele num: 120424
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3381A>G
  hgvsp: ENST00000394764.1:c.3381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3381A>G
  hgvsp: ENST00000545826.1:c.3381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3381A>G
  hgvsp: ENST00000380013.4:c.3381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3381A>G
  hgvsp: ENST00000413648.2:c.3381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3444A>G
  hgvsp: ENST00000513237.1:c.3444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3381A>G
  hgvsp: ENST00000305737.2:c.3381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3381A>G
  hgvsp: ENST00000540549.1:c.3381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3381A>G
  hgvsp: ENST00000265149.5:c.3381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23416
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln1127Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

4-106158484-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158484
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158484
    reference: chr 4
allele count: 1
allele frequency: 8.304406317992327e-6
allele num: 120418
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3385G>T
  hgvsp: ENSP00000442788.1:p.Asp1129Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3385G>T
  hgvsp: ENSP00000306705.2:p.Asp1129Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3385G>T
  hgvsp: ENSP00000369351.4:p.Asp1129Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3385G>T
  hgvsp: ENSP00000265149.5:p.Asp1129Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3385G>T
  hgvsp: ENSP00000442867.1:p.Asp1129Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3385G>T
  hgvsp: ENSP00000391448.2:p.Asp1129Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3385G>T
  hgvsp: ENSP00000378245.1:p.Asp1129Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3448G>T
  hgvsp: ENSP00000425443.1:p.Asp1150Tyr
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp1129Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

4-106158485-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158485
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158484
    reference: chr 4
allele count: 1
allele frequency: 8.30357884248111e-6
allele num: 120430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3389delT
  hgvsp: ENSP00000442867.1:p.Phe1130SerfsTer7
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3389delT
  hgvsp: ENSP00000306705.2:p.Phe1130SerfsTer7
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3452delT
  hgvsp: ENSP00000425443.1:p.Phe1151SerfsTer7
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3389delT
  hgvsp: ENSP00000369351.4:p.Phe1130SerfsTer7
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3389delT
  hgvsp: ENSP00000265149.5:p.Phe1130SerfsTer7
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3389delT
  hgvsp: ENSP00000442788.1:p.Phe1130SerfsTer7
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3389delT
  hgvsp: ENSP00000391448.2:p.Phe1130SerfsTer7
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3389delT
  hgvsp: ENSP00000378245.1:p.Phe1130SerfsTer7
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2863
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe1130SerfsTer7
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: AT
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

4-106158486-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158486
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158486
    reference: chr 4
allele count: 5
allele frequency: 4.152410058798127e-5
allele num: 120412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3387T>C
  hgvsp: ENST00000380013.4:c.3387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3387T>C
  hgvsp: ENST00000305737.2:c.3387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3387T>C
  hgvsp: ENST00000413648.2:c.3387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3450T>C
  hgvsp: ENST00000513237.1:c.3450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3387T>C
  hgvsp: ENST00000545826.1:c.3387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3387T>C
  hgvsp: ENST00000265149.5:c.3387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3387T>C
  hgvsp: ENST00000394764.1:c.3387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3387T>C
  hgvsp: ENST00000540549.1:c.3387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp1129Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS

http://identifiers.org/exac.variant/4-106158489-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158489
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158489
    reference: chr 4
allele count: 1
allele frequency: 8.304682179812978e-6
allele num: 120414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3453C>A
  hgvsp: ENSP00000425443.1:p.Phe1151Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3390C>A
  hgvsp: ENSP00000442867.1:p.Phe1130Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3390C>A
  hgvsp: ENSP00000265149.5:p.Phe1130Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3390C>A
  hgvsp: ENSP00000442788.1:p.Phe1130Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3390C>A
  hgvsp: ENSP00000378245.1:p.Phe1130Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3390C>A
  hgvsp: ENSP00000306705.2:p.Phe1130Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3390C>A
  hgvsp: ENSP00000369351.4:p.Phe1130Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3390C>A
  hgvsp: ENSP00000391448.2:p.Phe1130Leu
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe1130Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-106158498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158498
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158498
    reference: chr 4
allele count: 1
allele frequency: 8.304958059961797e-6
allele num: 120410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3399C>T
  hgvsp: ENST00000380013.4:c.3399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3399C>T
  hgvsp: ENST00000394764.1:c.3399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3462C>T
  hgvsp: ENST00000513237.1:c.3462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3399C>T
  hgvsp: ENST00000265149.5:c.3399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3399C>T
  hgvsp: ENST00000305737.2:c.3399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3399C>T
  hgvsp: ENST00000413648.2:c.3399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3399C>T
  hgvsp: ENST00000545826.1:c.3399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3399C>T
  hgvsp: ENST00000540549.1:c.3399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Cys1133Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

4-106158503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158503
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158503
    reference: chr 4
allele count: 1
allele frequency: 8.307303781484682e-6
allele num: 120376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3404G>A
  hgvsp: ENSP00000369351.4:p.Cys1135Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3404G>A
  hgvsp: ENSP00000306705.2:p.Cys1135Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3404G>A
  hgvsp: ENSP00000442867.1:p.Cys1135Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3404G>A
  hgvsp: ENSP00000442788.1:p.Cys1135Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3404G>A
  hgvsp: ENSP00000391448.2:p.Cys1135Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3404G>A
  hgvsp: ENSP00000265149.5:p.Cys1135Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3404G>A
  hgvsp: ENSP00000378245.1:p.Cys1135Tyr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3467G>A
  hgvsp: ENSP00000425443.1:p.Cys1156Tyr
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys1135Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-106158509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158509
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158509
    reference: chr 4
allele count: 4
allele frequency: 3.32242470555011e-5
allele num: 120394
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+1G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+1G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3410G>A
  hgvsp: ENSP00000378245.1:p.Gly1137Asp
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3410G>A
  hgvsp: ENSP00000306705.2:p.Gly1137Asp
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+1G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+1G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+1G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+1G>A
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
hgvs: c.3409+1G>A
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

4-106158523-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158523
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158523
    reference: chr 4
allele count: 5
allele frequency: 4.153168867846167e-5
allele num: 120390
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+15T>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+15T>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+15T>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3424T>A
  hgvsp: ENSP00000306705.2:p.Cys1142Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3424T>A
  hgvsp: ENSP00000378245.1:p.Cys1142Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+15T>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+15T>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+15T>A
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys1142Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

4-106158526-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158526
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158526
    reference: chr 4
allele count: 48
allele frequency: 3.988102161883713e-4
allele num: 120358
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+18A>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+18A>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+18A>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+18A>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3427A>G
  hgvsp: ENSP00000378245.1:p.Thr1143Ala
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+18A>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+18A>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3427A>G
  hgvsp: ENSP00000306705.2:p.Thr1143Ala
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20667
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23533
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr1143Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

4-106158541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158541
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158541
    reference: chr 4
allele count: 1
allele frequency: 8.318913882603488e-6
allele num: 120208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+33G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+33G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+33G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+33G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+33G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+33G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3442G>A
  hgvsp: ENSP00000378245.1:p.Val1148Ile
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3442G>A
  hgvsp: ENSP00000306705.2:p.Val1148Ile
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val1148Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/4-106158545-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158545
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158545
    reference: chr 4
allele count: 29
allele frequency: 2.413288063377938e-4
allele num: 120168
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+37A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+37A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3446A>C
  hgvsp: ENSP00000306705.2:p.Tyr1149Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+37A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3446A>C
  hgvsp: ENSP00000378245.1:p.Tyr1149Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+37A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+37A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+37A>C
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20673
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8530
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38086
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr1149Ser
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

4-106158547-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158547
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158547
    reference: chr 4
allele count: 6
allele frequency: 4.99425660490436e-5
allele num: 120138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3448C>T
  hgvsp: ENSP00000378245.1:p.Pro1150Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+39C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+39C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+39C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+39C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+39C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3448C>T
  hgvsp: ENSP00000306705.2:p.Pro1150Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+39C>T
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3658
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro1150Ser
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

4-106158548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158548
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158548
    reference: chr 4
allele count: 1
allele frequency: 8.32514693884347e-6
allele num: 120118
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+40C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+40C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+40C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3449C>T
  hgvsp: ENSP00000378245.1:p.Pro1150Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+40C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+40C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3449C>T
  hgvsp: ENSP00000306705.2:p.Pro1150Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+40C>T
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro1150Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

4-106158550-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158550
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158550
    reference: chr 4
allele count: 68
allele frequency: 5.661665528782909e-4
allele num: 120106
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+42G>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+42G>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+42G>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+42G>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+42G>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3451G>T
  hgvsp: ENSP00000378245.1:p.Glu1151Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3451G>T
  hgvsp: ENSP00000306705.2:p.Glu1151Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+42G>T
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20665
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 38019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu1151Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/4-106158559-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158559
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158559
    reference: chr 4
allele count: 1
allele frequency: 8.333472224537076e-6
allele num: 119998
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+51A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+51A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+51A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3460A>C
  hgvsp: ENSP00000306705.2:p.Asn1154His
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+51A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+51A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+51A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3460A>C
  hgvsp: ENSP00000378245.1:p.Asn1154His
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37955
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn1154His
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

4-106158560-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158560
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158560
    reference: chr 4
allele count: 15
allele frequency: 1.250458501450532e-4
allele num: 119956
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+52A>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+52A>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+52A>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3461A>G
  hgvsp: ENSP00000306705.2:p.Asn1154Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+52A>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+52A>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3461A>G
  hgvsp: ENSP00000378245.1:p.Asn1154Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+52A>G
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3056
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8495
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn1154Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

4-106158578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158578
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158578
    reference: chr 4
allele count: 28
allele frequency: 2.345137190525646e-4
allele num: 119396
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+70G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3479G>A
  hgvsp: ENSP00000306705.2:p.Gly1160Glu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+70G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+70G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+70G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3479G>A
  hgvsp: ENSP00000378245.1:p.Gly1160Glu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+70G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+70G>A
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20363
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8585
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8447
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly1160Glu
num of homozygotes: 2
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

4-106158579-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158579
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158580
    reference: chr 4
allele count: 1
allele frequency: 8.378016085790886e-6
allele num: 119360
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+75dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+75dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+75dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3484dupT
  hgvsp: ENSP00000306705.2:p.Ser1162PhefsTer14
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3484dupT
  hgvsp: ENSP00000378245.1:p.Ser1162PhefsTer14
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+75dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+75dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+75dupT
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser1162PhefsTer14
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

4-106158589-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158589
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158589
    reference: chr 4
allele count: 1
allele frequency: 8.404773911581778e-6
allele num: 118980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+81T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+81T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+81T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+81T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3490T>C
  hgvsp: ENSP00000378245.1:p.Phe1164Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+81T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3490T>C
  hgvsp: ENSP00000306705.2:p.Phe1164Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+81T>C
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe1164Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-106158595-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158595
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158595
    reference: chr 4
allele count: 2
allele frequency: 1.682991686021071e-5
allele num: 118836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+87T>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+87T>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+87T>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+87T>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.3496T>A
  hgvsp: ENSP00000378245.1:p.Ter1166LysextTer12
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+87T>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+87T>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.3496T>A
  hgvsp: ENSP00000306705.2:p.Ter1166LysextTer12
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36270
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ter1166LysextTer12
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

4-106158602-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158602
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158602
    reference: chr 4
allele count: 1
allele frequency: 8.43540169382866e-6
allele num: 118548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.*5T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+94T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+94T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+94T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+94T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+94T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.*5T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+94T>C
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22141
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8330
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35867
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

4-106158609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158609
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158609
    reference: chr 4
allele count: 2
allele frequency: 1.691246110133947e-5
allele num: 118256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+101G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+101G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+101G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+101G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+101G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+101G>A
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19549
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35417
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8286
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

4-106158639-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158639
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158639
    reference: chr 4
allele count: 1
allele frequency: 8.525149190110827e-6
allele num: 117300
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+131T>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+131T>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+131T>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.*42T>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+131T>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+131T>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.*42T>G
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+131T>G
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

4-106158643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158643
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158643
    reference: chr 4
allele count: 1
allele frequency: 8.540584859251161e-6
allele num: 117088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.*46G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.*46G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+135G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+135G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+135G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+135G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+135G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+135G>A
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7809
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

4-106158649-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106158649
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106158650
    reference: chr 4
allele count: 2
allele frequency: 1.710863986313088e-5
allele num: 116900
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.*58dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3409+147dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.*58dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3409+147dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3409+147dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3409+147dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3472+147dupT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3409+147dupT
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15723
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23152
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7277
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3588
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-106162518-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106162518
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106162518
    reference: chr 4
allele count: 1
allele frequency: 5.14721021206506e-5
allele num: 19428
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3432A>C
  hgvsp: ENSP00000369351.4:p.Glu1144Asp
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3410-1473A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3432A>C
  hgvsp: ENSP00000442788.1:p.Glu1144Asp
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3495A>C
  hgvsp: ENSP00000425443.1:p.Glu1165Asp
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.*3921A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.*3921A>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3432A>C
  hgvsp: ENSP00000391448.2:p.Glu1144Asp
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3410-1473A>C
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu1144Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

4-106162539-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106162539
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106162540
    reference: chr 4
allele count: 1
allele frequency: 5.122425980944576e-5
allele num: 19522
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.*3944dupG
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.*3944dupG
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3410-1450dupG
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.3455dupG
  hgvsp: ENSP00000391448.2:p.Ala1153SerfsTer4
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3410-1450dupG
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3518dupG
  hgvsp: ENSP00000425443.1:p.Ala1174SerfsTer4
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3455dupG
  hgvsp: ENSP00000442788.1:p.Ala1153SerfsTer4
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3455dupG
  hgvsp: ENSP00000369351.4:p.Ala1153SerfsTer4
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1153SerfsTer4
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

4-106162597-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106162597
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106162597
    reference: chr 4
allele count: 1
allele frequency: 5.256518082422203e-5
allele num: 19024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000306705
  ensembl transcript: ENST00000305737
  gene symbol: TET2
  hgvsc: ENST00000305737.2:c.*4000C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000391448
  ensembl transcript: ENST00000413648
  gene symbol: TET2
  hgvsc: ENST00000413648.2:c.*7C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3500+11C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3500+11C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000378245
  ensembl transcript: ENST00000394764
  gene symbol: TET2
  hgvsc: ENST00000394764.1:c.*4000C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3410-1394C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3410-1394C>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3563+11C>T
  variant of: http://identifiers.org/hgnc/25941
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4641
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

4-106163960-A-ATG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106163960
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106163962
    reference: chr 4
allele count: 6
allele frequency: 2.794336810730253e-4
allele num: 21472
alternate allele: ATG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3410-21_3410-20dupGT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3410-21_3410-20dupGT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3501-21_3501-20dupGT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3501-21_3501-20dupGT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3564-21_3564-20dupGT
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4996
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5266
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

4-106163960-ATG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106163960
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106163958
    reference: chr 4
allele count: 2
allele frequency: 9.314456035767511e-5
allele num: 21472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3410-21_3410-20delGT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3564-21_3564-20delGT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3501-21_3501-20delGT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3501-21_3501-20delGT
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3410-21_3410-20delGT
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5266
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: ATG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

4-106163998-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106163998
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106163998
    reference: chr 4
allele count: 1
allele frequency: 4.595588235294118e-5
allele num: 21760
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3508C>T
  hgvsp: ENSP00000442788.1:p.Gln1170Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3508C>T
  hgvsp: ENSP00000369351.4:p.Gln1170Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3571C>T
  hgvsp: ENSP00000425443.1:p.Gln1191Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3417C>T
  hgvsp: ENST00000265149.5:c.3417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3417C>T
  hgvsp: ENST00000545826.1:c.3417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5139
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9914
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln1170Ter
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-106164049-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164049
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164049
    reference: chr 4
allele count: 1
allele frequency: 4.570801718621446e-5
allele num: 21878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3468G>A
  hgvsp: ENST00000265149.5:c.3468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3622G>A
  hgvsp: ENSP00000425443.1:p.Gly1208Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3559G>A
  hgvsp: ENSP00000369351.4:p.Gly1187Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3559G>A
  hgvsp: ENSP00000442788.1:p.Gly1187Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3468G>A
  hgvsp: ENST00000545826.1:c.3468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17797
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly1187Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS

4-106164069-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164069
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164068
    reference: chr 4
allele count: 1
allele frequency: 4.570383912248629e-5
allele num: 21880
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3581delC
  hgvsp: ENSP00000442788.1:p.Pro1194LeufsTer32
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3490delC
  hgvsp: ENSP00000442867.1:p.Leu1164TyrfsTer3
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3490delC
  hgvsp: ENSP00000265149.5:p.Leu1164TyrfsTer3
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3644delC
  hgvsp: ENSP00000425443.1:p.Pro1215LeufsTer32
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3581delC
  hgvsp: ENSP00000369351.4:p.Pro1194LeufsTer32
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5142
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17839
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro1194LeufsTer32
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: TC
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

4-106164073-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164073
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164073
    reference: chr 4
allele count: 19
allele frequency: 8.682935746275477e-4
allele num: 21882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3492A>G
  hgvsp: ENST00000265149.5:c.3492A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3492A>G
  hgvsp: ENST00000545826.1:c.3492A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3646A>G
  hgvsp: ENSP00000425443.1:p.Ile1216Val
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3583A>G
  hgvsp: ENSP00000369351.4:p.Ile1195Val
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3583A>G
  hgvsp: ENSP00000442788.1:p.Ile1195Val
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17989
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5159
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile1195Val
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

4-106164083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164083
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164083
    reference: chr 4
allele count: 1
allele frequency: 4.568296025582458e-5
allele num: 21890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3593G>A
  hgvsp: ENSP00000369351.4:p.Trp1198Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3656G>A
  hgvsp: ENSP00000425443.1:p.Trp1219Ter
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3502G>A
  hgvsp: ENSP00000442867.1:p.Gly1168Arg
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3502G>A
  hgvsp: ENSP00000265149.5:p.Gly1168Arg
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3593G>A
  hgvsp: ENSP00000442788.1:p.Trp1198Ter
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Trp1198Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

4-106164699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164699
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164699
    reference: chr 4
allele count: 2
allele frequency: 1.016260162601626e-4
allele num: 19680
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3595-28G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3595-28G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3504-28G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3504-28G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3658-28G>A
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

4-106164720-CACGCAGGTGGTTCGCAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164720
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164703
    reference: chr 4
allele count: 1
allele frequency: 5.070993914807302e-5
allele num: 19720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4454
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
hgvs: c.3595-5_3606delCGCAGGTGGTTCGCAGA
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: CACGCAGGTGGTTCGCAG
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-106164723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164723
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164723
    reference: chr 4
allele count: 134
allele frequency: 6.791687785098834e-3
allele num: 19730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3658-4G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3595-4G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3504-4G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3595-4G>A
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3504-4G>A
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
hgvs: c.3595-4G>A
num of homozygotes: 3
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

4-106164741-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164741
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164741
    reference: chr 4
allele count: 7
allele frequency: 3.528581510232887e-4
allele num: 19838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3672C>G
  hgvsp: ENSP00000425443.1:p.Ser1224Arg
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3518C>G
  hgvsp: ENSP00000442867.1:p.Ala1173Gly
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3518C>G
  hgvsp: ENSP00000265149.5:p.Ala1173Gly
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3609C>G
  hgvsp: ENSP00000369351.4:p.Ser1203Arg
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3609C>G
  hgvsp: ENSP00000442788.1:p.Ser1203Arg
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser1203Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

4-106164746-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164746
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164746
    reference: chr 4
allele count: 1
allele frequency: 5.033725963958522e-5
allele num: 19866
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3614G>C
  hgvsp: ENSP00000442788.1:p.Ser1205Thr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3523G>C
  hgvsp: ENSP00000442867.1:p.Val1175Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3523G>C
  hgvsp: ENSP00000265149.5:p.Val1175Leu
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3614G>C
  hgvsp: ENSP00000369351.4:p.Ser1205Thr
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3677G>C
  hgvsp: ENSP00000425443.1:p.Ser1226Thr
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser1205Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

4-106164772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164772
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164772
    reference: chr 4
allele count: 1
allele frequency: 4.976609933313427e-5
allele num: 20094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3549C>T
  hgvsp: ENST00000545826.1:c.3549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3549C>T
  hgvsp: ENST00000265149.5:c.3549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3703C>T
  hgvsp: ENSP00000425443.1:p.Arg1235Trp
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3640C>T
  hgvsp: ENSP00000369351.4:p.Arg1214Trp
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3640C>T
  hgvsp: ENSP00000442788.1:p.Arg1214Trp
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg1214Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-106164773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164773
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164773
    reference: chr 4
allele count: 1
allele frequency: 4.963271788763152e-5
allele num: 20148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3550G>A
  hgvsp: ENSP00000265149.5:p.Gly1184Arg
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3704G>A
  hgvsp: ENSP00000425443.1:p.Arg1235Gln
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3641G>A
  hgvsp: ENSP00000442788.1:p.Arg1214Gln
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3550G>A
  hgvsp: ENSP00000442867.1:p.Gly1184Arg
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3641G>A
  hgvsp: ENSP00000369351.4:p.Arg1214Gln
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4728
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg1214Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

4-106164791-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164791
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164791
    reference: chr 4
allele count: 1
allele frequency: 4.869023273931249e-5
allele num: 20538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3568C>T
  hgvsp: ENSP00000442867.1:p.Pro1190Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3659C>T
  hgvsp: ENSP00000442788.1:p.Thr1220Ile
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3568C>T
  hgvsp: ENSP00000265149.5:p.Pro1190Ser
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3659C>T
  hgvsp: ENSP00000369351.4:p.Thr1220Ile
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3722C>T
  hgvsp: ENSP00000425443.1:p.Thr1241Ile
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr1220Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

4-106164793-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164793
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164793
    reference: chr 4
allele count: 1
allele frequency: 4.866653688923497e-5
allele num: 20548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3724T>C
  hgvsp: ENSP00000425443.1:p.Cys1242Arg
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3570T>C
  hgvsp: ENST00000265149.5:c.3570T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3661T>C
  hgvsp: ENSP00000442788.1:p.Cys1221Arg
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3661T>C
  hgvsp: ENSP00000369351.4:p.Cys1221Arg
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3570T>C
  hgvsp: ENST00000545826.1:c.3570T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys1221Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

4-106164802-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164802
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164801
    reference: chr 4
allele count: 1
allele frequency: 4.835122328594914e-5
allele num: 20682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3734delC
  hgvsp: ENSP00000425443.1:p.Ala1245GlufsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3671delC
  hgvsp: ENSP00000442788.1:p.Ala1224GlufsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.3580delC
  hgvsp: ENSP00000442867.1:p.Gln1194SerfsTer18
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3671delC
  hgvsp: ENSP00000369351.4:p.Ala1224GlufsTer2
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.3580delC
  hgvsp: ENSP00000265149.5:p.Gln1194SerfsTer18
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala1224GlufsTer2
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: GC
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-106164845-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164845
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164845
    reference: chr 4
allele count: 1
allele frequency: 4.678143712574851e-5
allele num: 21376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.*37T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3713T>C
  hgvsp: ENSP00000369351.4:p.Leu1238Pro
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3776T>C
  hgvsp: ENSP00000425443.1:p.Leu1259Pro
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.*37T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3713T>C
  hgvsp: ENSP00000442788.1:p.Leu1238Pro
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu1238Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD

4-106164861-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164861
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164861
    reference: chr 4
allele count: 1
allele frequency: 4.658529768005217e-5
allele num: 21466
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3729A>T
  hgvsp: ENSP00000442788.1:p.Lys1243Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.*53A>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3792A>T
  hgvsp: ENSP00000425443.1:p.Lys1264Asn
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.*53A>T
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3729A>T
  hgvsp: ENSP00000369351.4:p.Lys1243Asn
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys1243Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

4-106164875-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 106164875
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 106164875
    reference: chr 4
allele count: 1
allele frequency: 4.647704034207102e-5
allele num: 21516
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442788
  ensembl transcript: ENST00000540549
  gene symbol: TET2
  hgvsc: ENST00000540549.1:c.3743T>C
  hgvsp: ENSP00000442788.1:p.Leu1248Pro
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000425443
  ensembl transcript: ENST00000513237
  gene symbol: TET2
  hgvsc: ENST00000513237.1:c.3806T>C
  hgvsp: ENSP00000425443.1:p.Leu1269Pro
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000369351
  ensembl transcript: ENST00000380013
  gene symbol: TET2
  hgvsc: ENST00000380013.4:c.3743T>C
  hgvsp: ENSP00000369351.4:p.Leu1248Pro
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000265149
  ensembl transcript: ENST00000265149
  gene symbol: TET2
  hgvsc: ENST00000265149.5:c.*67T>C
  variant of: http://identifiers.org/hgnc/25941
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168769
  ensembl protein: ENSP00000442867
  ensembl transcript: ENST00000545826
  gene symbol: TET2
  hgvsc: ENST00000545826.1:c.*67T>C
  variant of: http://identifiers.org/hgnc/25941
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu1248Pro
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2871
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8601
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3680
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.902476780185758e-4
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.881e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.35e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.705525e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38140
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3699
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 8593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 23
allele frequency: 1.394277400581959e-3
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.975e0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.706075e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.276e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

GenotypeQuality
all individuals: 8599
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38120
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3679
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 771
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.998e1

DP
type: SiteQuality
SIO_000300: 1.704655e6

QD
type: SiteQuality
SIO_000300: 9.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.175e0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2866
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3679
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 770
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.710623422023694e-5
allele num: 10298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.359e1

DP
type: SiteQuality
SIO_000300: 1.703269e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.986e0

MQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 1.826e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8582
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3679
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e-1

FS
type: SiteQuality
SIO_000300: 4.331e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

QD
type: SiteQuality
SIO_000300: 1.475e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.702421e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

GenotypeQuality
all individuals: 465
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2869
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3680
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8581
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504211793020457e-5
allele num: 66480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.958e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.705e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

DP
type: SiteQuality
SIO_000300: 1.702466e6

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: -3.155e-1

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2869
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38013
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504302304591131e-5
allele num: 66476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

QD
type: SiteQuality
SIO_000300: 4.26e0

DP
type: SiteQuality
SIO_000300: 1.702329e6

MQ
type: SiteQuality
SIO_000300: 5.991e1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37992
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504438092372499e-5
allele num: 66470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.702154e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008876184744998e-5
allele num: 66470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

DP
type: SiteQuality
SIO_000300: 1.702154e6

QD
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

MQRankSum
type: SiteQuality
SIO_000300: -1.95e-1

FS
type: SiteQuality
SIO_000300: 5.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.700634e6

VQSLOD
type: SiteQuality
SIO_000300: -8.484e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

MQ
type: SiteQuality
SIO_000300: 5.907e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.832e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505389293671343e-5
allele num: 66428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.699893e6

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.709e0

FS
type: SiteQuality
SIO_000300: 6.879999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.529e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.745e0

MQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

QD
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 37681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.594e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

FS
type: SiteQuality
SIO_000300: 3.936e0

DP
type: SiteQuality
SIO_000300: 1.697853e6

QD
type: SiteQuality
SIO_000300: 1.564e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.725e0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 244
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variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50652324565368e-5
allele num: 66378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

VQSLOD
type: SiteQuality
SIO_000300: -2.599e0

MQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.529e0

FS
type: SiteQuality
SIO_000300: 1.1585e1

DP
type: SiteQuality
SIO_000300: 1.69597e6

QD
type: SiteQuality
SIO_000300: 3.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 242
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506568639267205e-5
allele num: 66376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.902e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.647e0

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.696033e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e0

QD
type: SiteQuality
SIO_000300: 2.43e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.996805111821086e-4
allele num: 10016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

DP
type: SiteQuality
SIO_000300: 1.694706e6

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 1.259e0

QD
type: SiteQuality
SIO_000300: 1.364e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8494
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.507477086348288e-5
allele num: 66336
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.002e0

DP
type: SiteQuality
SIO_000300: 1.693709e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

BaseQRankSum
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SIO_000300: 1.75e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.006441223832528e-4
allele num: 9936
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66348
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.058e1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

BaseQRankSum
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SIO_000300: 1.08e0

ClippingRankSum
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SIO_000300: -1.414e0

InbreedingCoeff
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SIO_000300: -3.0e-4

FS
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SIO_000300: 4.224e0

ReadPosRankSum
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SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: -7.937e-1

DP
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SIO_000300: 1.693325e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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SIO_000300: -1.127e0

FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 4.91e0

DP
type: SiteQuality
SIO_000300: 1.693219e6

MQ
type: SiteQuality
SIO_000300: 6.03e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.67e0

DP
type: SiteQuality
SIO_000300: 1.692909e6

FS
type: SiteQuality
SIO_000300: 9.477e0

MQRankSum
type: SiteQuality
SIO_000300: 6.41e-1

MQ
type: SiteQuality
SIO_000300: 6.034e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.487e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507431637975218e-5
allele num: 66338
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.192e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.935e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.05e0

FS
type: SiteQuality
SIO_000300: 4.843e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.692971e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.507204437209863e-5
allele num: 66348
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.078e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.003e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
type: SiteQuality
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MQ
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DP
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.85e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

Other
type: Population
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allele num: 900
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.25e-1

VQSLOD
type: SiteQuality
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.518344478583047e-5
allele num: 66396
num of homozygotes: 0

African
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Other
type: Population
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Latino
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allele frequency: 1.73550850399167e-4
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.697645e6

MQ
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.286e-1

DP
type: SiteQuality
SIO_000300: 1.697667e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.036e0

MQRankSum
type: SiteQuality
SIO_000300: -1.545e0

QD
type: SiteQuality
SIO_000300: 1.399e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.688e0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 1.6976e6

VQSLOD
type: SiteQuality
SIO_000300: 1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

QD
type: SiteQuality
SIO_000300: 4.05e0

FS
type: SiteQuality
SIO_000300: 9.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 6.045e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.518344478583047e-5
allele num: 66396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

DP
type: SiteQuality
SIO_000300: 1.697767e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

QD
type: SiteQuality
SIO_000300: 1.508e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 2.491e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.385e0

DP
type: SiteQuality
SIO_000300: 1.697697e6

QD
type: SiteQuality
SIO_000300: 2.383e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.012e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.624e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.256e1

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

FS
type: SiteQuality
SIO_000300: 2.801e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.207e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: 7.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

DP
type: SiteQuality
SIO_000300: 1.698146e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
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MQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.366000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.648e0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.011685339115769e-5
allele num: 66408
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.736714136853074e-4
allele num: 11516
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.276e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

East Asian
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Other
type: Population
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Latino
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allele frequency: 4.344803614876608e-4
allele num: 11508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 44
allele frequency: 4.478827361563518e-3
allele num: 9824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.477051460361613e-4
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.699482e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 504
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.601e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

DP
type: SiteQuality
SIO_000300: 1.69562e6

QD
type: SiteQuality
SIO_000300: 1.202e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

GenotypeQuality
all individuals: 1771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 28

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.663934426229508e-3
allele num: 9760
num of homozygotes: 1

Latino
type: Population
allele count: 2
allele frequency: 1.740644038294169e-4
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

DP
type: SiteQuality
SIO_000300: 1.695836e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

FS
type: SiteQuality
SIO_000300: 5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.342e1

MQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

GenotypeQuality
all individuals: 206
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 8530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38015
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.153846153846154e-4
allele num: 9750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.068e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.258e1

DP
type: SiteQuality
SIO_000300: 1.694469e6

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 38001
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66290
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.807e1

QD
type: SiteQuality
SIO_000300: 1.061e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.336e0

VQSLOD
type: SiteQuality
SIO_000300: -3.264e0

DP
type: SiteQuality
SIO_000300: 1.69418e6

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3711
bin: 9.75e1
variant carriers: 68

GenotypeQuality
all individuals: 573
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 870
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 60
allele frequency: 6.997900629811057e-3
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.240882103477523e-4
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.155e0

VQSLOD
type: SiteQuality
SIO_000300: 5.54e0

DP
type: SiteQuality
SIO_000300: 1.6967e6

QD
type: SiteQuality
SIO_000300: 1.184e1

GenotypeQuality
all individuals: 769
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3660
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510482750286992e-5
allele num: 66204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.92e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

FS
type: SiteQuality
SIO_000300: 1.113e0

DP
type: SiteQuality
SIO_000300: 1.69213e6

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
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variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 8.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 9.75e1
variant carriers: 15

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.0275380189067e-4
allele num: 9732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.115698482741945e-4
allele num: 66172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.267e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 1.802e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

DP
type: SiteQuality
SIO_000300: 1.691695e6

GenotypeQuality
all individuals: 2853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3038
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3685
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 1159
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variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 145
bin: 2.75e1
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GenotypeQuality
all individuals: 163
bin: 3.25e1
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GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 1771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37121
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.617344268016053e-4
allele num: 11462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.160599126274183e-4
allele num: 9614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.36322869955157e-3
allele num: 892
num of homozygotes: 1

East Asian
type: Population
allele count: 18
allele frequency: 2.1087160262418e-3
allele num: 8536
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

FS
type: SiteQuality
SIO_000300: 1.147e0

QD
type: SiteQuality
SIO_000300: 1.275e1

DP
type: SiteQuality
SIO_000300: 1.681941e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.43e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 172
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GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 8455
bin: 6.75e1
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GenotypeQuality
all individuals: 3667
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520496289989052e-5
allele num: 65768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.6801e6

FS
type: SiteQuality
SIO_000300: 2.258e0

MQRankSum
type: SiteQuality
SIO_000300: -4.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526344709689236e-5
allele num: 65516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.672612e6

FS
type: SiteQuality
SIO_000300: 7.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

QD
type: SiteQuality
SIO_000300: 1.642e1

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2848
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.05791694697572e-5
allele num: 65404
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.134e1

FS
type: SiteQuality
SIO_000300: 1.1114e1

VQSLOD
type: SiteQuality
SIO_000300: -1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.668323e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 872
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

DP
type: SiteQuality
SIO_000300: 1.662038e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.64e-1

FS
type: SiteQuality
SIO_000300: 1.922e0

QD
type: SiteQuality
SIO_000300: 1.443e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.808e-1

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213886865744113e-4
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.148e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

DP
type: SiteQuality
SIO_000300: 1.65584e6

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.025e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.187084520417854e-4
allele num: 8424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.014e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.37e0

VQSLOD
type: SiteQuality
SIO_000300: -2.592e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

MQ
type: SiteQuality
SIO_000300: 5.802e1

DP
type: SiteQuality
SIO_000300: 1.601555e6

MQRankSum
type: SiteQuality
SIO_000300: -4.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64278
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.77963125548727e-5
allele num: 11390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.601e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.595354e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.883e0

QD
type: SiteQuality
SIO_000300: 1.569e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.46e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3037
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.185792349726776e-4
allele num: 9150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.595099e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

FS
type: SiteQuality
SIO_000300: 1.7e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
SIO_000300: 1.081e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.371e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.639344262295082e-3
allele num: 610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.48e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.506e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.907e0

VQSLOD
type: SiteQuality
SIO_000300: -9.826e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.854e0

DP
type: SiteQuality
SIO_000300: 3.90707e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.200480192076831e-4
allele num: 8330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

FS
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 5.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.73e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 3.91393e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 298
bin: 3.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 4.793863854266539e-4
allele num: 2086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e0

VQSLOD
type: SiteQuality
SIO_000300: -2.006e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.332e0

DP
type: SiteQuality
SIO_000300: 3.80561e5

MQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

QD
type: SiteQuality
SIO_000300: 6.75e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8706
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 7.7780658542909e-4
allele num: 7714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.53e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.38e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

MQ
type: SiteQuality
SIO_000300: 6.024e1

DP
type: SiteQuality
SIO_000300: 6.32493e5

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

FS
type: SiteQuality
SIO_000300: 1.326e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 9.319664492078285e-4
allele num: 2146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.38e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

FS
type: SiteQuality
SIO_000300: 1.326e0

MQ
type: SiteQuality
SIO_000300: 6.024e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

QD
type: SiteQuality
SIO_000300: 1.53e1

DP
type: SiteQuality
SIO_000300: 6.32493e5

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 1557
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.138433515482696e-4
allele num: 8784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.445e0

DP
type: SiteQuality
SIO_000300: 6.44285e5

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.16e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.454e0

QD
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.380952380952381e-3
allele num: 420
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

DP
type: SiteQuality
SIO_000300: 6.67929e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.419999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.217e0

QD
type: SiteQuality
SIO_000300: 1.333e1

FS
type: SiteQuality
SIO_000300: 1.83e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 617
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.124859392575928e-4
allele num: 8890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.46e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

QD
type: SiteQuality
SIO_000300: 4.87e0

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8888
num of homozygotes: 0

South Asian
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allele count: 18
allele frequency: 2.274450341167551e-3
allele num: 7914
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.380952380952381e-3
allele num: 420
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.510000000000001e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.124353496739375e-4
allele num: 8894
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 422
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.44e-2

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7902
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 394
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2112
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 614
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.370791844476055e-4
allele num: 8436
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.9e-2

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.41e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.183151916706105e-4
allele num: 8452
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 618
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.21e-2

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1295
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

South Asian
type: Population
allele count: 55
allele frequency: 6.9549822964087e-3
allele num: 7908
num of homozygotes: 0

African
type: Population
allele count: 68
allele frequency: 3.210576015108593e-2
allele num: 2118
num of homozygotes: 2

Latino
type: Population
allele count: 3
allele frequency: 7.537688442211055e-3
allele num: 398
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.618122977346278e-3
allele num: 618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 7.095553453169347e-4
allele num: 8456
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

DP
type: SiteQuality
SIO_000300: 3.27519e5

QD
type: SiteQuality
SIO_000300: 1.45e1

VQSLOD
type: SiteQuality
SIO_000300: 6.13e0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 7.060484819957637e-4
allele num: 8498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.264222503160556e-4
allele num: 7910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.2185e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

QD
type: SiteQuality
SIO_000300: 1.574e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

FS
type: SiteQuality
SIO_000300: 7.023e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.502e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.646e-1

GenotypeQuality
all individuals: 4658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263902932254803e-4
allele num: 7912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.497e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

FS
type: SiteQuality
SIO_000300: 1.157e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.241e0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.336e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

DP
type: SiteQuality
SIO_000300: 3.2177e5

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

DP
type: SiteQuality
SIO_000300: 3.24179e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.434e0

QD
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 6.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

GenotypeQuality
all individuals: 1179
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 603
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.2438e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.06e0

QD
type: SiteQuality
SIO_000300: 5.53e0

FS
type: SiteQuality
SIO_000300: 1.4944e1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.064e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

GenotypeQuality
all individuals: 549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
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GenotypeQuality
all individuals: 327
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variant carriers: 0

GenotypeQuality
all individuals: 264
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GenotypeQuality
all individuals: 6
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.439024390243902e-3
allele num: 410
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.155e1

DP
type: SiteQuality
SIO_000300: 3.27337e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-2

FS
type: SiteQuality
SIO_000300: 1.186e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.179e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.791e0

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: -1.088e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 771
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.505e0

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.54e-1

DP
type: SiteQuality
SIO_000300: 3.27293e5

VQSLOD
type: SiteQuality
SIO_000300: -1.21e0

FS
type: SiteQuality
SIO_000300: 5.233e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

MQ
type: SiteQuality
SIO_000300: 5.988e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

QD
type: SiteQuality
SIO_000300: 6.76e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

QD
type: SiteQuality
SIO_000300: 3.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.602e0

VQSLOD
type: SiteQuality
SIO_000300: -7.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.28204e5

MQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8742
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.795e0

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-1

DP
type: SiteQuality
SIO_000300: 3.33766e5

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1390
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
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FS
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.28e-1