2-171785919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171785919
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171785919
    reference: chr 2
allele count: 2
allele frequency: 9.96710854181202e-5
allele num: 20066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+849G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+6G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.63+6G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+6G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.63+6G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+6G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+6G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+6G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+6G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 1.75e1
  variant carriers: 0
hgvs: c.63+6G>A
num of homozygotes: 1
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS

2-171785922-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171785922
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171785922
    reference: chr 2
allele count: 2
allele frequency: 9.958175662218681e-5
allele num: 20084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.63+9T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.63+9T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+9T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+9T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+9T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+9T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+9T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+9T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+852T>A
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

2-171785923-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171785923
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171785923
    reference: chr 2
allele count: 4
allele frequency: 2.094240837696335e-4
allele num: 19100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+10C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.63+10C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+10C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+853C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+10C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+10C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.63+10C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+10C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+10C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24917
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

2-171785928-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171785928
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171785928
    reference: chr 2
allele count: 3
allele frequency: 1.613770844540075e-4
allele num: 18590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+15G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.63+15G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+15G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.63+15G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+15G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+858G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+15G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+15G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+15G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 23538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS

2-171785947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171785947
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171785947
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 13694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+34G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.5G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+34G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+34G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+34G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+34G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.63+34G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+34G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+877G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.63+34G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18004
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25338
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14821
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26247
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

2-171785949-TGGAGGCGGGGCCGGCCGCGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171785949
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171785929
    reference: chr 2
allele count: 1
allele frequency: 7.640586797066015e-5
allele num: 13088
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5928
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13872
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26247
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: TGGAGGCGGGGCCGGCCGCGG
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

2-171785957-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171785957
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171785957
    reference: chr 2
allele count: 1
allele frequency: 1.137397634212921e-4
allele num: 8792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.63+44G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.15G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+44G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+44G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+44G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+44G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+887G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+44G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+44G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.63+44G>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4455
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

2-171785961-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171785961
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171785961
    reference: chr 2
allele count: 14
allele frequency: 1.879699248120301e-3
allele num: 7448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+48C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+48C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+891C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+48C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.63+48C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+48C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+48C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.19C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+48C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.63+48C>G
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25418
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18578
  bin: 7.5e0
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5874
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23994
  bin: 7.5e0
  variant carriers: 7
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

2-171785963-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171785963
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171785963
    reference: chr 2
allele count: 1
allele frequency: 1.503759398496241e-4
allele num: 6650
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+50G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.63+50G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+50G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+50G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+893G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.63+50G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+50G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.21G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+50G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+50G>C
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4968
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5524
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

2-171786215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786215
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786215
    reference: chr 2
allele count: 1
allele frequency: 7.307804735457468e-5
allele num: 13684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-112C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+302C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+302C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.273C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.64-36C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+302C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+302C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1145C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+302C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+302C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

2-171786218-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786218
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786216
    reference: chr 2
allele count: 8
allele frequency: 5.806357961968355e-4
allele num: 13778
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+306_63+307delCT
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+306_151+307delCT
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.64-32_64-31delCT
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.277_278delCT
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+306_63+307delCT
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-108_64-107delCT
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+306_151+307delCT
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1149_97+1150delCT
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+306_-6+307delCT
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+306_63+307delCT
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: CCT
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

2-171786229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786229
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786229
    reference: chr 2
allele count: 755
allele frequency: 5.382860402110366e-2
allele num: 14026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1159C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+316C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+316C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+316C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+316C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.287C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+316C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.64-22C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-98C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+316C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 2.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 2.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 27
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-171786233-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786233
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786234
    reference: chr 2
allele count: 4
allele frequency: 2.849002849002849e-4
allele num: 14040
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+327dupC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-87dupC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+327dupC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+327dupC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.298dupC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+327dupC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1170dupC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+327dupC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+327dupC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.64-11dupC
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-171786233-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786233
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786232
    reference: chr 2
allele count: 7
allele frequency: 4.985754985754986e-4
allele num: 14040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+327delC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+327delC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+327delC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+327delC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.298delC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+327delC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-87delC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+327delC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1170delC
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.64-11delC
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: AC
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

2-171786235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786235
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786235
    reference: chr 2
allele count: 1
allele frequency: 7.097232079489e-5
allele num: 14090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+322C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+322C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+322C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+322C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+322C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1165C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.64-16C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.293C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-92C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+322C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3949
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

2-171786238-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786238
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786238
    reference: chr 2
allele count: 7
allele frequency: 4.912970241437394e-4
allele num: 14248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1168C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+325C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.296C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+325C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.64-13C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+325C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+325C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-89C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+325C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+325C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

2-171786239-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786239
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786239
    reference: chr 2
allele count: 2767
allele frequency: 1.923932693644834e-1
allele num: 14382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+326C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1169C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.64-12C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+326C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+326C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.297C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+326C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+326C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+326C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-88C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 2.5e0
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 2.75e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.25e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 2.25e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.75e1
  variant carriers: 627
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 6.75e1
  variant carriers: 11
num of homozygotes: 287
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

2-171786240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786240
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786240
    reference: chr 2
allele count: 87
allele frequency: 6.04334537371492e-3
allele num: 14396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.298C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+327C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+327C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.64-11C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-87C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+327C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1170C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+327C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+327C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+327C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 3
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

2-171786251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786251
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786251
    reference: chr 2
allele count: 1
allele frequency: 6.913716814159292e-5
allele num: 14464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+338C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+338C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+338C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.309C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-76C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+338C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1181C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.64C>T
  hgvsp: ENSP00000398191.1:p.Leu22Phe
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+338C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+338C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu22Phe
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-171786282-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786282
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786282
    reference: chr 2
allele count: 166
allele frequency: 1.142621145374449e-2
allele num: 14528
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1212G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+369G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-45G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.95G>A
  hgvsp: ENSP00000398191.1:p.Arg32His
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+369G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.340G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+369G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+369G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+369G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+369G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg32His
num of homozygotes: 3
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

2-171786287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786287
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786287
    reference: chr 2
allele count: 1
allele frequency: 6.888001102080176e-5
allele num: 14518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+374C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+374C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-40C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.100C>T
  hgvsp: ENSP00000398191.1:p.Gln34Ter
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.345C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1217C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+374C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+374C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+374C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+374C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln34Ter
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS

http://identifiers.org/exac.variant/2-171786289-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786289
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786289
    reference: chr 2
allele count: 1
allele frequency: 6.887052341597796e-5
allele num: 14520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.347A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+376A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.102A>C
  hgvsp: ENSP00000398191.1:p.Gln34His
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1219A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+376A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+376A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+376A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+376A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-38A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+376A>C
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln34His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

2-171786300-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786300
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786300
    reference: chr 2
allele count: 1
allele frequency: 6.894649751792609e-5
allele num: 14504
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.358G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+387G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.113G>C
  hgvsp: ENSP00000398191.1:p.Cys38Ser
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1230G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+387G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+387G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+387G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+387G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+387G>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.64-27G>C
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5199
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Cys38Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-171786330-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786330
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786330
    reference: chr 2
allele count: 1
allele frequency: 7.092198581560284e-5
allele num: 14100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.143A>G
  hgvsp: ENSP00000398191.1:p.Glu48Gly
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.388A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+417A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+417A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.67A>G
  hgvsp: ENSP00000401808.1:p.Arg23Gly
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+417A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+417A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1260A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+417A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+417A>G
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg23Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-171786337-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786337
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786337
    reference: chr 2
allele count: 1
allele frequency: 7.196315486470927e-5
allele num: 13896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+424C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+424C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.74C>T
  hgvsp: ENSP00000401808.1:p.Pro25Leu
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+424C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+424C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.395C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+424C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.150C>T
  hgvsp: ENST00000454751.1:c.150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+424C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1267C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro25Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

2-171786338-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786338
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786338
    reference: chr 2
allele count: 12
allele frequency: 8.660508083140878e-4
allele num: 13856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+425G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.151G>A
  hgvsp: ENSP00000398191.1:p.Gly51Arg
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+425G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.396G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+425G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+425G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+425G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.75G>A
  hgvsp: ENST00000455067.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1268G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+425G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly51Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-171786364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786364
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786364
    reference: chr 2
allele count: 1
allele frequency: 8.571918395336877e-5
allele num: 11666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.422G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+451G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+451G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.101G>A
  hgvsp: ENSP00000401808.1:p.Cys34Tyr
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1294G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.177G>A
  hgvsp: ENST00000454751.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+451G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+451G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+451G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+451G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Cys34Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-171786365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786365
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786365
    reference: chr 2
allele count: 2
allele frequency: 1.726221301570861e-4
allele num: 11586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.178C>T
  hgvsp: ENSP00000398191.1:p.Arg60Trp
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+452C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.423C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1295C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+452C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+452C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.102C>T
  hgvsp: ENST00000455067.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+452C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+452C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+452C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg60Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

2-171786374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786374
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786374
    reference: chr 2
allele count: 1
allele frequency: 9.29022668153103e-5
allele num: 10764
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+461G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+461G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+461G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.111G>A
  hgvsp: ENST00000455067.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+461G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1304G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.187G>A
  hgvsp: ENSP00000398191.1:p.Val63Met
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+461G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+461G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.432G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val63Met
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

2-171786377-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786377
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786377
    reference: chr 2
allele count: 1
allele frequency: 9.689922480620155e-5
allele num: 10320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.435T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+464T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+464T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+464T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+464T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+464T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.190T>C
  hgvsp: ENST00000454751.1:c.190T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.114T>C
  hgvsp: ENST00000455067.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+464T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1307T>C
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys38Cys
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

2-171786385-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786385
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786385
    reference: chr 2
allele count: 1
allele frequency: 1.074575542660649e-4
allele num: 9306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+472C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+472C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.443C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+472C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1315C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+472C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+472C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.198C>T
  hgvsp: ENST00000454751.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+472C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His66His
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-171786386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786386
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786386
    reference: chr 2
allele count: 14
allele frequency: 1.532399299474606e-3
allele num: 9136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.199C>T
  hgvsp: ENSP00000398191.1:p.Leu67Phe
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*6C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+473C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.444C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1316C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+473C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+473C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+473C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+473C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+473C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu67Phe
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

2-171786396-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786396
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786396
    reference: chr 2
allele count: 1
allele frequency: 1.241927471435668e-4
allele num: 8052
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+483G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.209G>A
  hgvsp: ENSP00000398191.1:p.Gly70Asp
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+483G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+483G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+483G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+483G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.454G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+483G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1326G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly70Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

2-171786398-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786398
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786398
    reference: chr 2
allele count: 1
allele frequency: 1.287995878413189e-4
allele num: 7764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.456C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1328C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.211C>G
  hgvsp: ENSP00000398191.1:p.Arg71Gly
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+485C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+485C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+485C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+485C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*18C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+485C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+485C>G
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3741
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg71Gly
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

2-171786399-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786399
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786399
    reference: chr 2
allele count: 1
allele frequency: 1.305483028720627e-4
allele num: 7660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.212G>T
  hgvsp: ENSP00000398191.1:p.Arg71Leu
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+486G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+486G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+486G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1329G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+486G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*19G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.457G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+486G>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+486G>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg71Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-171786407-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786407
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786407
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 7228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+494T>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+494T>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+494T>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+494T>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+494T>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.465T>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.220T>G
  hgvsp: ENSP00000398191.1:p.Ter74GlyextTer?
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*27T>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+494T>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1337T>G
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: stop lost
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Ter74GlyextTer?
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/2-171786424-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786424
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786424
    reference: chr 2
allele count: 1
allele frequency: 1.786352268667381e-4
allele num: 5598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+511A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+511A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+511A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+511A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.482A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*15A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1354A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*44A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+511A>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+511A>C
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

2-171786438-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786438
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786438
    reference: chr 2
allele count: 15
allele frequency: 3.128911138923655e-3
allele num: 4794
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*58C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+525C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*29C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1368C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+525C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+525C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+525C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.496C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+525C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+525C>G
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

2-171786446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786446
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786446
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 4374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+533C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.504C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+533C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+533C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*66C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+533C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+533C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+533C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1376C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4049
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

2-171786449-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786449
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786449
    reference: chr 2
allele count: 1
allele frequency: 2.333177788147457e-4
allele num: 4286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1379G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.507G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*69G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+536G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+536G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+536G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+536G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+536G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+536G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 0
hgvs: c.*69G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

2-171786454-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171786454
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171786453
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 4088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+1386delG
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+543delG
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+543delG
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+5delG
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+5delG
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+5delG
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+543delG
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+543delG
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.63+543delG
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-6+543delG
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
hgvs: c.*71+5delG
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: AG
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

2-171793128-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793128
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793128
    reference: chr 2
allele count: 3
allele frequency: 2.080155318263764e-4
allele num: 14422
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6677T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7215T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7215T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6677T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8058T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.64-6T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6677T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7215T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.-5-6T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7215T>C
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: c.-5-6T>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

2-171793139-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793139
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793139
    reference: chr 2
allele count: 75
allele frequency: 5.174554988271009e-3
allele num: 14494
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6688A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6688A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8069A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7226A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.1A>G
  hgvsp: ENSP00000410208.2:p.Met1?
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7226A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.69A>G
  hgvsp: ENST00000442798.1:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7226A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6688A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7226A>G
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD

2-171793161-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793161
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793161
    reference: chr 2
allele count: 1
allele frequency: 6.874742197167606e-5
allele num: 14546
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7248T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7248T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6710T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7248T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.23T>A
  hgvsp: ENSP00000410208.2:p.Leu8Ter
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*19T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6710T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6710T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7248T>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8091T>A
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5893
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu8Ter
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

2-171793185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793185
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793185
    reference: chr 2
allele count: 9
allele frequency: 6.252605252188412e-4
allele num: 14394
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7272C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6734C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8115C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7272C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7272C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6734C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7272C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6734C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.47C>T
  hgvsp: ENSP00000410208.2:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro16Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

2-171793202-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793202
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793202
    reference: chr 2
allele count: 1
allele frequency: 7.074136955291455e-5
allele num: 14136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6751A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6751A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7289A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7289A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*60A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7289A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.64A>G
  hgvsp: ENSP00000410208.2:p.Thr22Ala
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8132A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6751A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7289A>G
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr22Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

2-171793217-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793217
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793217
    reference: chr 2
allele count: 2
allele frequency: 1.449065352847413e-4
allele num: 13802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6766T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7304T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*75T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7304T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6766T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.79T>C
  hgvsp: ENSP00000410208.2:p.Tyr27His
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7304T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8147T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6766T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7304T>C
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr27His
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

2-171793226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793226
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793226
    reference: chr 2
allele count: 1
allele frequency: 7.412898443291327e-5
allele num: 13490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6775C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7313C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6775C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*84C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7313C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.88C>T
  hgvsp: ENSP00000410208.2:p.Gln30Ter
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6775C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7313C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7313C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8156C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4977
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln30Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

2-171793268-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793268
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793268
    reference: chr 2
allele count: 9
allele frequency: 7.313505607020966e-4
allele num: 12306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6817C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7355C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8198C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*95+31C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6817C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6817C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7355C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7355C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.99+31C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7355C>G
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

2-171793268-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793268
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793268
    reference: chr 2
allele count: 737
allele frequency: 5.988948480416057e-2
allele num: 12306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.99+31C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7355C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7355C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7355C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8198C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7355C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6817C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6817C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*95+31C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6817C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 1.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.75e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 7.5e0
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 2.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 13
num of homozygotes: 21
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

2-171793269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793269
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793269
    reference: chr 2
allele count: 1
allele frequency: 8.173941474579042e-5
allele num: 12234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6818G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.99+32G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7356G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6818G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7356G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7356G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8199G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7356G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*95+32G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6818G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

2-171793275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793275
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793275
    reference: chr 2
allele count: 2
allele frequency: 1.667222407469156e-4
allele num: 11996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7362C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7362C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6824C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.99+38C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7362C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6824C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8205C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6824C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7362C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*95+38C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

2-171793279-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171793279
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171793279
    reference: chr 2
allele count: 2
allele frequency: 1.667500416875104e-4
allele num: 11994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.97+8209A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.151+7366A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.509+6828A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*95+42A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.151+7366A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*71+6828A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.63+7366A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.99+42A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.63+7366A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*42+6828A>G
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

2-171804809-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804809
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804809
    reference: chr 2
allele count: 1
allele frequency: 8.518032675173342e-6
allele num: 117398
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.64-51A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.510-51A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.100-51A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.152-51A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*96-51A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.152-51A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*43-51A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*72-51A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.64-51A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.98-51A>G
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

2-171804817-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804817
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804817
    reference: chr 2
allele count: 3
allele frequency: 2.550022950206552e-5
allele num: 117646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.100-43C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.64-43C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.64-43C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*72-43C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.98-43C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.510-43C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*43-43C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*96-43C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.152-43C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.152-43C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6470
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18148
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2572
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

2-171804823-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804823
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804823
    reference: chr 2
allele count: 1
allele frequency: 8.469695429752346e-6
allele num: 118068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*72-37T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.152-37T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*43-37T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.510-37T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*96-37T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.100-37T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.64-37T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.98-37T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.152-37T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.64-37T>C
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-171804827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804827
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804827
    reference: chr 2
allele count: 4
allele frequency: 3.380662609871535e-5
allele num: 118320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*43-33C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.510-33C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*72-33C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.64-33C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.152-33C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*96-33C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.152-33C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.100-33C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.98-33C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.64-33C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16236
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5476
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25373
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6086
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

2-171804828-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804828
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804828
    reference: chr 2
allele count: 1
allele frequency: 8.443806467955754e-6
allele num: 118430
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.64-32A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*72-32A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.100-32A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.152-32A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*96-32A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.64-32A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*43-32A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.152-32A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.510-32A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.98-32A>G
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16360
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

2-171804832-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804832
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804832
    reference: chr 2
allele count: 3
allele frequency: 2.521686503933831e-5
allele num: 118968
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*72-28T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.98-28T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.152-28T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*43-28T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.152-28T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.64-28T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.64-28T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*96-28T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.100-28T>C
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.510-28T>C
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16612
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

2-171804843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804843
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804843
    reference: chr 2
allele count: 3
allele frequency: 2.496006389776358e-5
allele num: 120192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*96-17C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.510-17C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.152-17C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*43-17C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*72-17C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.98-17C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.64-17C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.100-17C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.152-17C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.64-17C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6084
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

2-171804844-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804844
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804844
    reference: chr 2
allele count: 9
allele frequency: 7.478188616535106e-5
allele num: 120350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.152-16G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.64-16G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*96-16G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.510-16G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.100-16G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.64-16G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.98-16G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*72-16G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.152-16G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*43-16G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17345
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

2-171804850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804850
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804850
    reference: chr 2
allele count: 3
allele frequency: 2.484924789609701e-5
allele num: 120728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.98-10G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.152-10G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*43-10G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.510-10G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.64-10G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.64-10G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*72-10G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.152-10G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.100-10G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*96-10G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

2-171804855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804855
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804855
    reference: chr 2
allele count: 3
allele frequency: 2.481923325115409e-5
allele num: 120874
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.64-5C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.100-5C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.152-5C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*96-5C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.98-5C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*72-5C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.64-5C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*43-5C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.152-5C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.510-5C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.64-5C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

2-171804856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804856
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804856
    reference: chr 2
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.98-4G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.64-4G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*43-4G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*96-4G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.100-4G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.152-4G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*72-4G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.64-4G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.152-4G>A
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.510-4G>A
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.64-4G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

2-171804863-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804863
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804863
    reference: chr 2
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*99C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*75C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.67C>T
  hgvsp: ENSP00000234160.4:p.Gln23Ter
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.513C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.101C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.67C>T
  hgvsp: ENSP00000413945.1:p.Gln23Ter
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.155C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.103C>T
  hgvsp: ENSP00000410208.2:p.Gln35Ter
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.155C>T
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28947
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln23Ter
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

2-171804865-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804865
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804865
    reference: chr 2
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.515A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.69A>G
  hgvsp: ENST00000234160.4:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.105A>G
  hgvsp: ENST00000452526.2:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.69A>G
  hgvsp: ENST00000444801.1:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.103A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.157A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.157A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*101A>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*77A>G
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln23Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

2-171804880-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804880
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804880
    reference: chr 2
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.84A>T
  hgvsp: ENST00000234160.4:c.84A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*116A>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*92A>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.84A>T
  hgvsp: ENST00000444801.1:c.84A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.120A>T
  hgvsp: ENST00000452526.2:c.120A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.172A>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*63A>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.530A>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.118A>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.172A>T
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly28Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-171804881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804881
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804881
    reference: chr 2
allele count: 6
allele frequency: 4.953764861294584e-5
allele num: 121120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.531C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.173C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.119C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.121C>T
  hgvsp: ENSP00000410208.2:p.His41Tyr
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*64C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.85C>T
  hgvsp: ENSP00000234160.4:p.His29Tyr
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.173C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*93C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*117C>T
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.85C>T
  hgvsp: ENSP00000413945.1:p.His29Tyr
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His29Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

2-171804899-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171804899
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 171804899
    reference: chr 2
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000493692
  gene symbol: GORASP2
  hgvsc: ENST00000493692.1:n.191C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000401808
  ensembl transcript: ENST00000455067
  gene symbol: GORASP2
  hgvsc: ENST00000455067.1:c.*111C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000398191
  ensembl transcript: ENST00000454751
  gene symbol: GORASP2
  hgvsc: ENST00000454751.1:c.*82C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000471559
  gene symbol: GORASP2
  hgvsc: ENST00000471559.1:n.137C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497928
  gene symbol: GORASP2
  hgvsc: ENST00000497928.1:n.549C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000410208
  ensembl transcript: ENST00000452526
  gene symbol: GORASP2
  hgvsc: ENST00000452526.2:c.139C>G
  hgvsp: ENSP00000410208.2:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000234160
  ensembl transcript: ENST00000234160
  gene symbol: GORASP2
  hgvsc: ENST00000234160.4:c.103C>G
  hgvsp: ENSP00000234160.4:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115806
  ensembl transcript: ENST00000497674
  gene symbol: GORASP2
  hgvsc: ENST00000497674.1:n.191C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000413945
  ensembl transcript: ENST00000444801
  gene symbol: GORASP2
  hgvsc: ENST00000444801.1:c.94+9C>G
  variant of: http://identifiers.org/hgnc/17500
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115806
  ensembl protein: ENSP00000399889
  ensembl transcript: ENST00000442798
  gene symbol: GORASP2
  hgvsc: ENST00000442798.1:c.*135C>G
  variant of: http://identifiers.org/hgnc/17500
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro35Ala
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18381
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28029
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 9.337068160597573e-4
allele num: 2142
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.029e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.76e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.96467e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 16
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 723
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2174
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 5.750431282346176e-4
allele num: 3478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.886e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 4.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.84e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 3.90984e5

GenotypeQuality
all individuals: 25647
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 911
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19579
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 3.955696202531646e-4
allele num: 10112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2022
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 3.094e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.13e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.754e-1

DP
type: SiteQuality
SIO_000300: 3.76546e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

QD
type: SiteQuality
SIO_000300: 7.24e0

GenotypeQuality
all individuals: 24620
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20846
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.637554585152838e-3
allele num: 1832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3300
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.35e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.765e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 3.60495e5

FS
type: SiteQuality
SIO_000300: 2.761e0

GenotypeQuality
all individuals: 797
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.69e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

QD
type: SiteQuality
SIO_000300: 5.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

DP
type: SiteQuality
SIO_000300: 2.83892e5

VQSLOD
type: SiteQuality
SIO_000300: -2.696e0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2360
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.868131868131869e-4
allele num: 1456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.78228e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.89e-2

MQ
type: SiteQuality
SIO_000300: 4.935e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.948e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.163e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.8e0

GenotypeQuality
all individuals: 655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5212
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8554
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.30890052356021e-3
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1118
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.44e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.032e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.25e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 2.49034e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 644
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 11
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 6897
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 5636
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3920
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 74
bin: 6.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.213764337851929e-4
allele num: 3836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.158301158301158e-2
allele num: 1036
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.171e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.510000000000001e-2

FS
type: SiteQuality
SIO_000300: 4.75e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.43962e5

QD
type: SiteQuality
SIO_000300: 1.511e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.917152858809801e-4
allele num: 3428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.4333e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.98e-2

QD
type: SiteQuality
SIO_000300: 9.31e0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e0

VQSLOD
type: SiteQuality
SIO_000300: -1.87e0

GenotypeQuality
all individuals: 1948
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 207
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4780
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.94e0

MQRankSum
type: SiteQuality
SIO_000300: -1.836e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.96e-2

FS
type: SiteQuality
SIO_000300: 1.534e0

VQSLOD
type: SiteQuality
SIO_000300: -1.025e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.227e1

DP
type: SiteQuality
SIO_000300: 2.44496e5

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.646090534979424e-2
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.303e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.83e-2

DP
type: SiteQuality
SIO_000300: 2.48225e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

QD
type: SiteQuality
SIO_000300: 1.751e1

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 2

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 5

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 710

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 57
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variant carriers: 1

GenotypeQuality
all individuals: 1768
bin: 7.5e0
variant carriers: 11

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 7.25e1
variant carriers: 2

African
type: Population
allele count: 5
allele frequency: 5.518763796909493e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.84931506849315e-3
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 6.666666666666667e-2
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 599
allele frequency: 8.22124622563821e-2
allele num: 7286
num of homozygotes: 24

Other
type: Population
allele count: 7
allele frequency: 4.545454545454546e-2
allele num: 154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 140
allele frequency: 2.873563218390805e-2
allele num: 4872
num of homozygotes: 3

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 2.66866e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

FS
type: SiteQuality
SIO_000300: 6.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

QD
type: SiteQuality
SIO_000300: 1.451e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

GenotypeQuality
all individuals: 155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
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GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 1644
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 416
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GenotypeQuality
all individuals: 652
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GenotypeQuality
all individuals: 1108
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 64
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.74423710208562e-4
allele num: 7288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.093327875562833e-4
allele num: 4886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.998e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.37e-2

QD
type: SiteQuality
SIO_000300: 1.134e1

DP
type: SiteQuality
SIO_000300: 2.59564e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

GenotypeQuality
all individuals: 155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 304
bin: 2.25e1
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GenotypeQuality
all individuals: 1108
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 131
bin: 3.25e1
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GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 64
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 112
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variant carriers: 0

GenotypeQuality
all individuals: 3830
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 5.518763796909493e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.896551724137931e-3
allele num: 290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.37e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

QD
type: SiteQuality
SIO_000300: 1.134e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.49e-1

MQ
type: SiteQuality
SIO_000300: 5.998e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.59564e5

GenotypeQuality
all individuals: 313
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 208
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.364256480218281e-4
allele num: 7330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.61493e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.425e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.22e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.295e0

FS
type: SiteQuality
SIO_000300: 1.3537e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

QD
type: SiteQuality
SIO_000300: 1.673e1

GenotypeQuality
all individuals: 236
bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 9.75e1
variant carriers: 6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.418152350081037e-3
allele num: 4936
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 2.109e0

QD
type: SiteQuality
SIO_000300: 1.508e1

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.83e-1

DP
type: SiteQuality
SIO_000300: 2.62516e5

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

GenotypeQuality
all individuals: 1299
bin: 7.5e0
variant carriers: 52

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 149
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 388
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 138
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 17

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 21

GenotypeQuality
all individuals: 2715
bin: 9.75e1
variant carriers: 2394

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 59
bin: 9.25e1
variant carriers: 18

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 12

GenotypeQuality
all individuals: 101
bin: 8.25e1
variant carriers: 26

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 141
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 2

South Asian
type: Population
allele count: 1118
allele frequency: 1.48828541001065e-1
allele num: 7512
num of homozygotes: 97

Other
type: Population
allele count: 38
allele frequency: 2.467532467532468e-1
allele num: 154
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 8
allele frequency: 2.352941176470588e-1
allele num: 34
num of homozygotes: 0

Latino
type: Population
allele count: 49
allele frequency: 1.678082191780822e-1
allele num: 292
num of homozygotes: 4

African
type: Population
allele count: 81
allele frequency: 8.940397350993377e-2
allele num: 906
num of homozygotes: 4

East Asian
type: Population
allele count: 27
allele frequency: 5.555555555555555e-2
allele num: 486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1446
allele frequency: 2.893157262905162e-1
allele num: 4998
num of homozygotes: 178

QD
type: SiteQuality
SIO_000300: 1.472e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.28e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 3.17593e5

GenotypeQuality
all individuals: 850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4783
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.5e0
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GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 7.25e1
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GenotypeQuality
all individuals: 227
bin: 7.75e1
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GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 9.75e1
variant carriers: 82

GenotypeQuality
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.027397260273973e-2
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 5.197920831667333e-3
allele num: 5002
num of homozygotes: 1

South Asian
type: Population
allele count: 58
allele frequency: 7.708665603402445e-3
allele num: 7524
num of homozygotes: 2

QD
type: SiteQuality
SIO_000300: 1.166e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

DP
type: SiteQuality
SIO_000300: 2.05963e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

GenotypeQuality
all individuals: 859
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1809
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
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variant carriers: 0

GenotypeQuality
all individuals: 495
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variant carriers: 1

GenotypeQuality
all individuals: 135
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5003
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.320306311064167e-4
allele num: 7574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-2

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 7.78e0

VQSLOD
type: SiteQuality
SIO_000300: -2.479e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 2.07336e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.076e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1519
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variant carriers: 1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5108
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 9.75e1
variant carriers: 163

Other
type: Population
allele count: 4
allele frequency: 2.597402597402598e-2
allele num: 154
num of homozygotes: 0

African
type: Population
allele count: 59
allele frequency: 6.512141280353201e-2
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 7.942811755361398e-3
allele num: 5036
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 1.36986301369863e-2
allele num: 292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

South Asian
type: Population
allele count: 59
allele frequency: 7.738719832109129e-3
allele num: 7624
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 2.11552e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.68e0

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

GenotypeQuality
all individuals: 865
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
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GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 238
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GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
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GenotypeQuality
all individuals: 229
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GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 5203
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312680493567866e-4
allele num: 7618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.417e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.517e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.729e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.21e-2

QD
type: SiteQuality
SIO_000300: 8.66e0

DP
type: SiteQuality
SIO_000300: 2.03105e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5203
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1567
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GenotypeQuality
all individuals: 170
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 129
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GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 865
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variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.99e1

VQSLOD
type: SiteQuality
SIO_000300: -2.115e0

DP
type: SiteQuality
SIO_000300: 2.03096e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-1

FS
type: SiteQuality
SIO_000300: 6.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.38e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

MQRankSum
type: SiteQuality
SIO_000300: -1.717e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 411
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 128
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 7.5e0
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GenotypeQuality
all individuals: 3
bin: 2.75e1
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GenotypeQuality
all individuals: 858
bin: 6.75e1
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GenotypeQuality
all individuals: 144
bin: 2.5e0
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GenotypeQuality
all individuals: 6
bin: 3.75e1
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.315097317201473e-4
allele num: 7604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.02817e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 1.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.318e1

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 435
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GenotypeQuality
all individuals: 1362
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GenotypeQuality
all individuals: 801
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GenotypeQuality
all individuals: 143
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GenotypeQuality
all individuals: 4721
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
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GenotypeQuality
all individuals: 225
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.333333333333333e-2
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.95716e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 208
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.389660922734853e-4
allele num: 7196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.119e0

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.87e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.605e-1

DP
type: SiteQuality
SIO_000300: 1.9191e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 5.721e0

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

GenotypeQuality
all individuals: 1357
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4441
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.345291479820628e-2
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.455e1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

MQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

FS
type: SiteQuality
SIO_000300: 3.668e0

DP
type: SiteQuality
SIO_000300: 1.91062e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

GenotypeQuality
all individuals: 154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.36854571293226e-4
allele num: 4222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.52295e5

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
SIO_000300: 1.451e1

FS
type: SiteQuality
SIO_000300: 1.185e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.158e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

GenotypeQuality
all individuals: 2399
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 2422
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 2

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
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variant carriers: 0

GenotypeQuality
all individuals: 225
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GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 160
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.563791874554526e-4
allele num: 5612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

DP
type: SiteQuality
SIO_000300: 1.52215e5

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 129
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 145
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variant carriers: 0

GenotypeQuality
all individuals: 158
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 393
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variant carriers: 1

GenotypeQuality
all individuals: 40
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 3023
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.513826043237808e-4
allele num: 3978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.646e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.39816e5

QD
type: SiteQuality
SIO_000300: 1.469e1

FS
type: SiteQuality
SIO_000300: 2.258e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

GenotypeQuality
all individuals: 3238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
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GenotypeQuality
all individuals: 326
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variant carriers: 0

GenotypeQuality
all individuals: 291
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GenotypeQuality
all individuals: 58
bin: 5.75e1
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GenotypeQuality
all individuals: 390
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 124
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GenotypeQuality
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 144
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.173913043478261e-3
allele num: 460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4742
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.34459e5

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.297e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

QD
type: SiteQuality
SIO_000300: 6.48e0

VQSLOD
type: SiteQuality
SIO_000300: -1.218e0

GenotypeQuality
all individuals: 319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3523
bin: 2.25e1
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GenotypeQuality
all individuals: 1114
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.487562189054726e-4
allele num: 4020
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.982e-1

DP
type: SiteQuality
SIO_000300: 1.24263e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.436e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

QD
type: SiteQuality
SIO_000300: 1.374e1

GenotypeQuality
all individuals: 1064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
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variant carriers: 13

GenotypeQuality
all individuals: 315
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 119
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 142
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GenotypeQuality
all individuals: 251
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GenotypeQuality
all individuals: 59
bin: 9.25e1
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GenotypeQuality
all individuals: 40
bin: 4.75e1
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GenotypeQuality
all individuals: 99
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 2.752293577981652e-2
allele num: 436
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 5.104645227156713e-4
allele num: 3918
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 1.23276e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

FS
type: SiteQuality
SIO_000300: 1.1282e1

VQSLOD
type: SiteQuality
SIO_000300: -3.254e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

QD
type: SiteQuality
SIO_000300: 1.661e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.332e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.25e1
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GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.385964912280702e-3
allele num: 228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3294
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.656e0

VQSLOD
type: SiteQuality
SIO_000300: -8.622e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.194e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.14955e5

MQRankSum
type: SiteQuality
SIO_000300: -1.012e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.39e-2

QD
type: SiteQuality
SIO_000300: 1.263e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 132
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.369668246445498e-3
allele num: 422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3222
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

DP
type: SiteQuality
SIO_000300: 1.13762e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

VQSLOD
type: SiteQuality
SIO_000300: -1.381e0

QD
type: SiteQuality
SIO_000300: 1.141e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

GenotypeQuality
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3768
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.448275862068965e-4
allele num: 2900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 2.518e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.12887e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.71e-1

QD
type: SiteQuality
SIO_000300: 6.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.228e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

GenotypeQuality
all individuals: 3733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 7.5e0
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GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 805
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variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 177
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.751e1

VQSLOD
type: SiteQuality
SIO_000300: -1.546e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.34e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

DP
type: SiteQuality
SIO_000300: 1.09991e5

GenotypeQuality
all individuals: 309
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3452
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 634
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
all individuals: 377
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.695491500369549e-4
allele num: 2706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.094e0

MQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.8702e4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.76e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.178e0

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

GenotypeQuality
all individuals: 522
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 1

GenotypeQuality
all individuals: 139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 88
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.912568306010929e-2
allele num: 732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.208333333333333e-3
allele num: 192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 916
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.1939e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

FS
type: SiteQuality
SIO_000300: 9.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.63e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
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DP
type: SiteQuality
SIO_000300: 8.8313e4

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.24e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: -1.741e0

VQSLOD
type: SiteQuality
SIO_000300: -2.947e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

QD
type: SiteQuality
SIO_000300: 2.615e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.96e-1

GenotypeQuality
all individuals: 78
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
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GenotypeQuality
all individuals: 810
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 375
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 135
bin: 3.75e1
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GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.724137931034483e-3
allele num: 580
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.35e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.4e1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 8.7607e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.78e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.7052e4

QD
type: SiteQuality
SIO_000300: 5.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 79
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5745
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4996
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.96930404869013e-4
allele num: 7558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.04e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

DP
type: SiteQuality
SIO_000300: 1.80443e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.491e1

GenotypeQuality
all individuals: 168
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 9.75e1
variant carriers: 74

GenotypeQuality
all individuals: 825
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1228
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5805
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 56
allele frequency: 1.114206128133705e-2
allele num: 5026
num of homozygotes: 1

Latino
type: Population
allele count: 4
allele frequency: 1.36986301369863e-2
allele num: 292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.183587585481326e-3
allele num: 7604
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.651884700665188e-3
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

DP
type: SiteQuality
SIO_000300: 1.82475e5

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.978630787495053e-4
allele num: 5054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7644
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.571e0

QD
type: SiteQuality
SIO_000300: 8.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.724e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.80273e5

GenotypeQuality
all individuals: 17
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5748
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variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4966
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.179863660199266e-3
allele num: 7628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.532e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

FS
type: SiteQuality
SIO_000300: 4.197e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.9e-1

QD
type: SiteQuality
SIO_000300: 8.6e0

DP
type: SiteQuality
SIO_000300: 1.7762e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 6
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.317175974710221e-4
allele num: 7592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.174e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.37e-2

MQ
type: SiteQuality
SIO_000300: 5.937e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e0

QD
type: SiteQuality
SIO_000300: 1.034e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.12e-1

DP
type: SiteQuality
SIO_000300: 1.72992e5

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
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GenotypeQuality
all individuals: 160
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5262
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4654
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.648305084745763e-4
allele num: 7552
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.634e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.03e-1

FS
type: SiteQuality
SIO_000300: 2.559e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.58e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

DP
type: SiteQuality
SIO_000300: 1.67325e5

MQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

QD
type: SiteQuality
SIO_000300: 8.25e0

GenotypeQuality
all individuals: 41
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1793
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 116
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.231146809460062e-4
allele num: 4482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.63574e5

FS
type: SiteQuality
SIO_000300: 2.09e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.68e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

GenotypeQuality
all individuals: 555
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 279
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.470588235294118e-2
allele num: 544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3940
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.25e-3
allele num: 160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

QD
type: SiteQuality
SIO_000300: 1.488e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.37934e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.85e-2

GenotypeQuality
all individuals: 491
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2112
bin: 6.25e1
variant carriers: 7

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 7.5e0
variant carriers: 9

GenotypeQuality
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bin: 3.25e1
variant carriers: 3

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 9

GenotypeQuality
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bin: 9.75e1
variant carriers: 685

GenotypeQuality
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bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 12
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.286764705882353e-2
allele num: 544
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 8.208955223880597e-2
allele num: 134
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 342
allele frequency: 8.680203045685279e-2
allele num: 3940
num of homozygotes: 7

South Asian
type: Population
allele count: 367
allele frequency: 5.080287929125139e-2
allele num: 7224
num of homozygotes: 13

Latino
type: Population
allele count: 9
allele frequency: 5.625e-2
allele num: 160
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.333333333333334e-3
allele num: 300
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.488e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.85e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.12e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

DP
type: SiteQuality
SIO_000300: 1.37934e5

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.579979360165118e-4
allele num: 3876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7224
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.79e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

DP
type: SiteQuality
SIO_000300: 1.34263e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.527e1

GenotypeQuality
all individuals: 184
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1746
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 2

GenotypeQuality
all individuals: 864
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.263157894736842e-4
allele num: 3800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7092
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.27655e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.164e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.413e1

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 230
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1642
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.809778027535825e-4
allele num: 7118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3776
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.24883e5

FS
type: SiteQuality
SIO_000300: 4.771e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 9.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.29e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.01e-1

QD
type: SiteQuality
SIO_000300: 6.8e0

VQSLOD
type: SiteQuality
SIO_000300: -1.392e0

GenotypeQuality
all individuals: 2667
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 451
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3458
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GenotypeQuality
all individuals: 541
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559867723217071e-5
allele num: 64108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.883e1

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e0

DP
type: SiteQuality
SIO_000300: 1.731583e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.856435643564356e-4
allele num: 16160
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.09e0

QD
type: SiteQuality
SIO_000300: 9.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.757455e6

GenotypeQuality
all individuals: 792
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
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GenotypeQuality
all individuals: 1850
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GenotypeQuality
all individuals: 6084
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GenotypeQuality
all individuals: 34110
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GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 1804
bin: 2.25e1
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GenotypeQuality
all individuals: 888
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1293
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variant carriers: 0

GenotypeQuality
all individuals: 744
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variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 875
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variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548850752741466e-5
allele num: 64564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.558e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.573e0

MQRankSum
type: SiteQuality
SIO_000300: -9.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.526e-1

DP
type: SiteQuality
SIO_000300: 1.797309e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1098
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37413
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variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
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GenotypeQuality
all individuals: 1348
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.178942165101334e-5
allele num: 64736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.177e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.965e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

DP
type: SiteQuality
SIO_000300: 1.823044e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.227e1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
all individuals: 370
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5099
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54354335813293e-5
allele num: 64786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.091e0

FS
type: SiteQuality
SIO_000300: 2.124e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.41e-1

DP
type: SiteQuality
SIO_000300: 1.827535e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.413e1

GenotypeQuality
all individuals: 766
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6090
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 1525
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variant carriers: 0

GenotypeQuality
all individuals: 531
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variant carriers: 0

GenotypeQuality
all individuals: 200
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 593
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variant carriers: 0

GenotypeQuality
all individuals: 743
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.603910254442773e-5
allele num: 65162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.178e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.842489e6

MQ
type: SiteQuality
SIO_000300: 5.923e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 1.076e0

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

GenotypeQuality
all individuals: 225
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 524
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variant carriers: 0

GenotypeQuality
all individuals: 643
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variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 1518
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 41872
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variant carriers: 0

GenotypeQuality
all individuals: 158
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variant carriers: 0

GenotypeQuality
all individuals: 5271
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variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 1840
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variant carriers: 0

GenotypeQuality
all individuals: 1278
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-5
allele num: 66020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.732099196646873e-5
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

DP
type: SiteQuality
SIO_000300: 1.869501e6

FS
type: SiteQuality
SIO_000300: 6.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.856e0

GenotypeQuality
all individuals: 5304
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
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variant carriers: 0

GenotypeQuality
all individuals: 560
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variant carriers: 0

GenotypeQuality
all individuals: 735
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 1

GenotypeQuality
all individuals: 128
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 136
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variant carriers: 0

GenotypeQuality
all individuals: 525
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GenotypeQuality
all individuals: 1271
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1523
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 42108
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.27141811081279e-4
allele num: 16388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512264464809606e-5
allele num: 66126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 1.872078e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.54e-1

FS
type: SiteQuality
SIO_000300: 1.293e0

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 9.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 737
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.9120559114735e-4
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66376
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.257e0

QD
type: SiteQuality
SIO_000300: 1.28e1

DP
type: SiteQuality
SIO_000300: 1.87688e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1539
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6079
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 523
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.513178481165002e-5
allele num: 66472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.26e-1

FS
type: SiteQuality
SIO_000300: 6.46e-1

DP
type: SiteQuality
SIO_000300: 1.879211e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 6077
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GenotypeQuality
all individuals: 256
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 523
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GenotypeQuality
all individuals: 1274
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variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.384e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 2.612e0

QD
type: SiteQuality
SIO_000300: 8.99e0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.880133e6

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6078
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

MQ
type: SiteQuality
SIO_000300: 5.882e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.265e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.07e-1

QD
type: SiteQuality
SIO_000300: 1.054e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.881533e6

VQSLOD
type: SiteQuality
SIO_000300: -1.264e0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5390
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 1.881759e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.777e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.82e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.16e-1

FS
type: SiteQuality
SIO_000300: 1.172e0

GenotypeQuality
all individuals: 43027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5393
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6078
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.22e1

FS
type: SiteQuality
SIO_000300: 4.947e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 1.88291e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.418e0

VQSLOD
type: SiteQuality
SIO_000300: -3.619e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.915e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6083
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.638568829593693e-4
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.28e0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

FS
type: SiteQuality
SIO_000300: 2.861e0

DP
type: SiteQuality
SIO_000300: 1.883149e6

MQ
type: SiteQuality
SIO_000300: 5.929e1

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

GenotypeQuality
all individuals: 5368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42896
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 735
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GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0