http://identifiers.org/exac.variant/3-63985276-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63985276
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63985276
    reference: chr 3
allele count: 1
allele frequency: 3.81854284405071e-5
allele num: 26188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000420234
  ensembl transcript: ENST00000487717
  gene symbol: ATXN7
  hgvsc: ENST00000487717.1:c.*133C>A
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000439585
  ensembl transcript: ENST00000538065
  gene symbol: ATXN7
  hgvsc: ENST00000538065.1:c.*41C>A
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000295900
  ensembl transcript: ENST00000295900
  gene symbol: ATXN7
  hgvsc: ENST00000295900.6:c.*133C>A
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000381590
  ensembl transcript: ENST00000398590
  gene symbol: ATXN7
  hgvsc: ENST00000398590.3:c.*41C>A
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000428277
  ensembl transcript: ENST00000484332
  gene symbol: ATXN7
  hgvsc: ENST00000484332.1:c.*133C>A
  variant of: http://identifiers.org/hgnc/10560
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5501
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4374
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

3-63985281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63985281
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63985281
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 25370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000428277
  ensembl transcript: ENST00000484332
  gene symbol: ATXN7
  hgvsc: ENST00000484332.1:c.*138C>T
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000439585
  ensembl transcript: ENST00000538065
  gene symbol: ATXN7
  hgvsc: ENST00000538065.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000420234
  ensembl transcript: ENST00000487717
  gene symbol: ATXN7
  hgvsc: ENST00000487717.1:c.*138C>T
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000381590
  ensembl transcript: ENST00000398590
  gene symbol: ATXN7
  hgvsc: ENST00000398590.3:c.*46C>T
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000295900
  ensembl transcript: ENST00000295900
  gene symbol: ATXN7
  hgvsc: ENST00000295900.6:c.*138C>T
  variant of: http://identifiers.org/hgnc/10560
canonical: true
consequence: 3' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14565
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5809
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6275
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4054
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

3-63985281-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63985281
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63985280
    reference: chr 3
allele count: 3
allele frequency: 1.182499014584155e-4
allele num: 25370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000439585
  ensembl transcript: ENST00000538065
  gene symbol: ATXN7
  hgvsc: ENST00000538065.1:c.*49delG
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000428277
  ensembl transcript: ENST00000484332
  gene symbol: ATXN7
  hgvsc: ENST00000484332.1:c.*141delG
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000381590
  ensembl transcript: ENST00000398590
  gene symbol: ATXN7
  hgvsc: ENST00000398590.3:c.*49delG
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000295900
  ensembl transcript: ENST00000295900
  gene symbol: ATXN7
  hgvsc: ENST00000295900.6:c.*141delG
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000420234
  ensembl transcript: ENST00000487717
  gene symbol: ATXN7
  hgvsc: ENST00000487717.1:c.*141delG
  variant of: http://identifiers.org/hgnc/10560
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6275
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4054
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5809
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CG
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-63985282-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63985282
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63985282
    reference: chr 3
allele count: 1
allele frequency: 3.969514131470308e-5
allele num: 25192
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000381590
  ensembl transcript: ENST00000398590
  gene symbol: ATXN7
  hgvsc: ENST00000398590.3:c.*47G>A
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000420234
  ensembl transcript: ENST00000487717
  gene symbol: ATXN7
  hgvsc: ENST00000487717.1:c.*139G>A
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000428277
  ensembl transcript: ENST00000484332
  gene symbol: ATXN7
  hgvsc: ENST00000484332.1:c.*139G>A
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000295900
  ensembl transcript: ENST00000295900
  gene symbol: ATXN7
  hgvsc: ENST00000295900.6:c.*139G>A
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000439585
  ensembl transcript: ENST00000538065
  gene symbol: ATXN7
  hgvsc: ENST00000538065.1:c.*47G>A
  variant of: http://identifiers.org/hgnc/10560
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23719
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4303
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6767
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

3-63985285-CTGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63985285
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63985282
    reference: chr 3
allele count: 1
allele frequency: 3.998080921157844e-5
allele num: 25012
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000381590
  ensembl transcript: ENST00000398590
  gene symbol: ATXN7
  hgvsc: ENST00000398590.3:c.*55_*57delGTT
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000439585
  ensembl transcript: ENST00000538065
  gene symbol: ATXN7
  hgvsc: ENST00000538065.1:c.*55_*57delGTT
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000428277
  ensembl transcript: ENST00000484332
  gene symbol: ATXN7
  hgvsc: ENST00000484332.1:c.*147_*149delGTT
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000295900
  ensembl transcript: ENST00000295900
  gene symbol: ATXN7
  hgvsc: ENST00000295900.6:c.*147_*149delGTT
  variant of: http://identifiers.org/hgnc/10560
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163635
  ensembl protein: ENSP00000420234
  ensembl transcript: ENST00000487717
  gene symbol: ATXN7
  hgvsc: ENST00000487717.1:c.*147_*149delGTT
  variant of: http://identifiers.org/hgnc/10560
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5041
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5892
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4055
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: CTGT
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-63996294-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996294
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996294
    reference: chr 3
allele count: 1
allele frequency: 1.099215160375492e-5
allele num: 90974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.*50T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+865A>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4519T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*178T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.*50T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.*50T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1989T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.*50T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2558T>G
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12282
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9620
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4695
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD

3-63996308-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996308
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996308
    reference: chr 3
allele count: 2
allele frequency: 2.168821028888696e-5
allele num: 92216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.*36A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.*36A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1975A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4505A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.*36A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*164A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.*36A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+879T>G
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2544A>C
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18313
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4920
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-63996319-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996319
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996319
    reference: chr 3
allele count: 1
allele frequency: 1.042883363924579e-5
allele num: 95888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4494G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1964G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+890C>T
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*153G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.*25G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.*25G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2533G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.*25G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.*25G>A
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24135
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

3-63996322-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996322
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996322
    reference: chr 3
allele count: 1
allele frequency: 1.017459606853608e-5
allele num: 98284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2530T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.*22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+893A>G
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.*22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.*22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1961T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.*22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*150T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4491T>C
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11442
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3958
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

3-63996326-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996326
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996326
    reference: chr 3
allele count: 3
allele frequency: 2.972828348891135e-5
allele num: 100914
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.*18A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2526A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*146A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.*18A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.*18A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.*18A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1957A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4487A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+897T>C
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30204
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4951
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

3-63996327-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996327
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996327
    reference: chr 3
allele count: 1
allele frequency: 9.853575862680566e-6
allele num: 101486
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.*17A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1956A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.*17A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2525A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+898T>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*145A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4486A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.*17A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.*17A>G
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3466
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

3-63996328-TGTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996328
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996324
    reference: chr 3
allele count: 2
allele frequency: 1.957560097094981e-5
allele num: 102168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4481_4484delTAAC
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.*12_*15delTAAC
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2520_2523delTAAC
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.*12_*15delTAAC
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.*12_*15delTAAC
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*140_*143delTAAC
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1951_1954delTAAC
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.*12_*15delTAAC
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+904_2104+907delGTTA
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: TGTTA
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-63996339-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996339
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996339
    reference: chr 3
allele count: 1
allele frequency: 9.207763986593496e-6
allele num: 108604
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.*5A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.*5A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+910T>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.*5A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1944A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4474A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2513A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.*5A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*133A>G
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35303
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

3-63996349-T-TATTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996349
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996353
    reference: chr 3
allele count: 2
allele frequency: 1.765131590560076e-5
allele num: 113306
alternate allele: TATTA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.1044_1047dupTAAT
  hgvsp: ENSP00000419227.1:p.Met350Ter
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+925_2104+928dupATTA
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1320_1323dupTAAT
  hgvsp: ENSP00000418695.1:p.Met442Ter
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1161_1164dupTAAT
  hgvsp: ENSP00000295901.4:p.Met389Ter
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1930_1933dupTAAT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.1047_1050dupTAAT
  hgvsp: ENSP00000377952.2:p.Met351Ter
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2499_2502dupTAAT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4460_4463dupTAAT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*119_*122dupTAAT
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4036
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met389Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

3-63996371-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996371
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996371
    reference: chr 3
allele count: 8
allele frequency: 6.753562504220977e-5
allele num: 118456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*101A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4442A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1143A>G
  hgvsp: ENST00000295901.4:c.1143A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2481A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+942T>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1912A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.1026A>G
  hgvsp: ENST00000482510.1:c.1026A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1302A>G
  hgvsp: ENST00000492933.1:c.1302A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.1029A>G
  hgvsp: ENST00000394431.2:c.1029A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln381Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-63996380-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996380
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996380
    reference: chr 3
allele count: 3
allele frequency: 2.515807658118511e-5
allele num: 119246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*92C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2472C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1293C>T
  hgvsp: ENST00000492933.1:c.1293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1134C>T
  hgvsp: ENST00000295901.4:c.1134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.1020C>T
  hgvsp: ENST00000394431.2:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+951G>A
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.1017C>T
  hgvsp: ENST00000482510.1:c.1017C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4433C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1903C>T
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9207
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn378Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-63996392-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996392
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996392
    reference: chr 3
allele count: 1
allele frequency: 8.35421888053467e-6
allele num: 119700
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+963A>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.1008T>G
  hgvsp: ENSP00000377952.2:p.Asp336Glu
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1122T>G
  hgvsp: ENSP00000295901.4:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2460T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4421T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.1005T>G
  hgvsp: ENSP00000419227.1:p.Asp335Glu
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*80T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1891T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1281T>G
  hgvsp: ENSP00000418695.1:p.Asp427Glu
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4999
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp374Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

3-63996416-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996416
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996416
    reference: chr 3
allele count: 6
allele frequency: 5.002000800320128e-5
allele num: 119952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2436C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.981C>T
  hgvsp: ENST00000482510.1:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.984C>T
  hgvsp: ENST00000394431.2:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1098C>T
  hgvsp: ENST00000295901.4:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1257C>T
  hgvsp: ENST00000492933.1:c.1257C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1867C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+987G>A
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*56C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4397C>T
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr366Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-63996424-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996424
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996424
    reference: chr 3
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+995A>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1249T>G
  hgvsp: ENSP00000418695.1:p.Trp417Gly
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1859T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.973T>G
  hgvsp: ENSP00000419227.1:p.Trp325Gly
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4389T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2428T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1090T>G
  hgvsp: ENSP00000295901.4:p.Trp364Gly
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*48T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.976T>G
  hgvsp: ENSP00000377952.2:p.Trp326Gly
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Trp364Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-63996432-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996432
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996432
    reference: chr 3
allele count: 1
allele frequency: 8.359666282122017e-6
allele num: 119622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4381G>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+1003C>A
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2420G>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.968G>T
  hgvsp: ENSP00000377952.2:p.Ser323Ile
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1082G>T
  hgvsp: ENSP00000295901.4:p.Ser361Ile
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*40G>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1241G>T
  hgvsp: ENSP00000418695.1:p.Ser414Ile
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.965G>T
  hgvsp: ENSP00000419227.1:p.Ser322Ile
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1851G>T
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser361Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-63996432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996432
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996432
    reference: chr 3
allele count: 1
allele frequency: 8.359666282122017e-6
allele num: 119622
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+1003C>T
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1241G>A
  hgvsp: ENSP00000418695.1:p.Ser414Asn
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.968G>A
  hgvsp: ENSP00000377952.2:p.Ser323Asn
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.965G>A
  hgvsp: ENSP00000419227.1:p.Ser322Asn
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1851G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2420G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4381G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1082G>A
  hgvsp: ENSP00000295901.4:p.Ser361Asn
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser361Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-63996439-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996439
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996439
    reference: chr 3
allele count: 1
allele frequency: 8.370442294170824e-6
allele num: 119468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1234C>T
  hgvsp: ENSP00000418695.1:p.Pro412Ser
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.961C>T
  hgvsp: ENSP00000377952.2:p.Pro321Ser
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1075C>T
  hgvsp: ENSP00000295901.4:p.Pro359Ser
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1844C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4374C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+1010G>A
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.958C>T
  hgvsp: ENSP00000419227.1:p.Pro320Ser
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2413C>T
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10225
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro359Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

3-63996441-C-CTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996441
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996443
    reference: chr 3
allele count: 5
allele frequency: 4.187534547160014e-5
allele num: 119402
alternate allele: CTA
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-3_*32-2dupTA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-3_1233-2dupTA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+1015_2104+1016dupTA
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-3_4373-2dupTA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-3_960-2dupTA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-3_2412-2dupTA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-3_957-2dupTA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-3_1074-2dupTA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-3_1843-2dupTA
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5282
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1074-3_1074-2dupTA
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-63996443-A-ATAAATAAATTCAAGAAAAAATGAATTATTTAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996443
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996475
    reference: chr 3
allele count: 1
allele frequency: 8.355475342992263e-6
allele num: 119682
alternate allele: ATAAATAAATTCAAGAAAAAATGAATTATTTAC
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38434
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5289
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

3-63996445-AAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996445
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996442
    reference: chr 3
allele count: 2
allele frequency: 1.676783258995942e-5
allele num: 119276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-8_1843-6delATT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+1019_2104+1021delTAA
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-8_960-6delATT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-8_957-6delATT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-8_*32-6delATT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-8_4373-6delATT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-8_2412-6delATT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-8_1233-6delATT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-8_1074-6delATT
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1074-8_1074-6delATT
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: AAAT
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

3-63996446-A-AATAAATTCAAGAAAAAATGAATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996446
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996469
    reference: chr 3
allele count: 157
allele frequency: 1.313565703385151e-3
allele num: 119522
alternate allele: AATAAATTCAAGAAAAAATGAATT
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10277
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 1.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36397
  bin: 2.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

3-63996447-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996447
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996447
    reference: chr 3
allele count: 4
allele frequency: 3.344313830409846e-5
allele num: 119606
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+1018A>G
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-7T>C
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1074-7T>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

3-63996448-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996448
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996448
    reference: chr 3
allele count: 1
allele frequency: 8.361343835181191e-6
allele num: 119598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-8A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-8A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-8A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-8A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-8A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-8A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-8A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2104+1019T>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-8A>G
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1074-8A>G
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

3-63996448-T-TAAATTCAAGAAAAAATGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996448
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996466
    reference: chr 3
allele count: 1
allele frequency: 8.361343835181191e-6
allele num: 119598
alternate allele: TAAATTCAAGAAAAAATGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

3-63996457-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996457
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996458
    reference: chr 3
allele count: 1
allele frequency: 8.374788536589452e-6
allele num: 119406
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-18dupT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-18dupT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-18dupT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-18dupT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-18dupT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-18dupT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-18dupT
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-1010dupA
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-18dupT
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

3-63996460-A-AAAATGAATTAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996460
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996471
    reference: chr 3
allele count: 1
allele frequency: 8.372544751251695e-6
allele num: 119438
alternate allele: AAAATGAATTAT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5285
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34644
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

3-63996462-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996462
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996462
    reference: chr 3
allele count: 1
allele frequency: 8.370162046337218e-6
allele num: 119472
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-22T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-1011A>G
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10245
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

3-63996463-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996463
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996463
    reference: chr 3
allele count: 8
allele frequency: 6.698596644003081e-5
allele num: 119428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-23T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-23T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-23T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-23T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-23T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-23T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-23T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-23T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-1010A>G
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34855
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10231
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

3-63996471-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996471
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996471
    reference: chr 3
allele count: 1
allele frequency: 8.375069094320028e-6
allele num: 119402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-31A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-1002T>G
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-31A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-31A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-31A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-31A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-31A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-31A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-31A>C
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-63996473-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996473
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996473
    reference: chr 3
allele count: 1
allele frequency: 8.402655239055541e-6
allele num: 119010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-33A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-33A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-33A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-33A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-33A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-33A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-33A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-33A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-1000T>C
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5554
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/3-63996474-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996474
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996474
    reference: chr 3
allele count: 2
allele frequency: 1.675378635571639e-5
allele num: 119376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-34T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-34T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-34T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-34T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-34T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-34T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-34T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-34T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-999A>C
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10662
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34450
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

3-63996474-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996474
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996474
    reference: chr 3
allele count: 8
allele frequency: 6.701514542286557e-5
allele num: 119376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-34T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-34T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-34T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-34T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-34T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-34T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-34T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-34T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-999A>G
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34343
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5097
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34450
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

3-63996484-T-TTATTCCATGACAATAGTTGACCTACTTTTAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996484
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996517
    reference: chr 3
allele count: 1
allele frequency: 8.38335401227323e-6
allele num: 119284
alternate allele: TTATTCCATGACAATAGTTGACCTACTTTTAAAA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5064
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

3-63996490-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996490
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996490
    reference: chr 3
allele count: 11
allele frequency: 9.221689413500554e-5
allele num: 119284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-50G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-50G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-50G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-50G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-50G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-50G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-983C>T
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-50G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-50G>A
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11718
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 34227
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

3-63996492-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996492
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996492
    reference: chr 3
allele count: 1
allele frequency: 8.361343835181191e-6
allele num: 119598
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2412-52A>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*32-52A>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1074-52A>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.957-52A>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4373-52A>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1233-52A>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-981T>A
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.960-52A>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1843-52A>T
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

3-63996509-C-CTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996509
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996513
    reference: chr 3
allele count: 376
allele frequency: 3.122871713094467e-3
allele num: 120402
alternate allele: CTTTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+41_*31+44dupAAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+41_1232+44dupAAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+41_2411+44dupAAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+41_1842+44dupAAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+41_959+44dupAAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+41_1073+44dupAAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+41_4372+44dupAAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+41_956+44dupAAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-963_2105-960dupTTTT
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8350
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 20445
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 5.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12942
  bin: 3.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 4.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 3.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2877
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-63996512-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996512
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996512
    reference: chr 3
allele count: 1
allele frequency: 8.292836647703714e-6
allele num: 120586
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+42A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+42A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+42A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+42A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+42A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+42A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+42A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+42A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-961T>C
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12902
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25483
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-63996512-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996512
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996512
    reference: chr 3
allele count: 4
allele frequency: 3.317134659081486e-5
allele num: 120586
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-961T>G
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+42A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+42A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+42A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+42A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+42A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+42A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+42A>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+42A>C
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20552
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12902
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9094
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

3-63996527-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996527
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996527
    reference: chr 3
allele count: 1
allele frequency: 8.28953694646617e-6
allele num: 120634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+27C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+27C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+27C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-946G>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+27C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+27C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+27C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+27C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+27C>G
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12894
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-63996528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996528
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996528
    reference: chr 3
allele count: 2
allele frequency: 1.657852417977751e-5
allele num: 120638
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-945C>T
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+26G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+26G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+26G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+26G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+26G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+26G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+26G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+26G>A
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

3-63996529-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996529
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996529
    reference: chr 3
allele count: 3
allele frequency: 2.486531288852051e-5
allele num: 120650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+25G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+25G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+25G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+25G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+25G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+25G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-944C>T
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+25G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+25G>A
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

3-63996532-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996532
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996532
    reference: chr 3
allele count: 1
allele frequency: 8.285827919925758e-6
allele num: 120688
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+22A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+22A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+22A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-941T>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+22A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+22A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+22A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+22A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+22A>G
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27911
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

3-63996534-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996534
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996534
    reference: chr 3
allele count: 1
allele frequency: 8.285141427364165e-6
allele num: 120698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+20T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+20T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+20T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+20T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+20T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+20T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+20T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+20T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-939A>G
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

3-63996534-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996534
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996534
    reference: chr 3
allele count: 1
allele frequency: 8.285141427364165e-6
allele num: 120698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+20T>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+20T>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-939A>T
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+20T>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+20T>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+20T>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+20T>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+20T>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+20T>A
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-63996539-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996539
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996539
    reference: chr 3
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+15C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+15C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+15C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+15C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+15C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-934G>A
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+15C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+15C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+15C>T
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9043
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-63996546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996546
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996546
    reference: chr 3
allele count: 24
allele frequency: 1.987478883036868e-4
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+8C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+8C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+8C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+8C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+8C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+8C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+8C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+8C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-927G>A
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5870
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12902
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1073+8C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

3-63996546-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996546
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996546
    reference: chr 3
allele count: 2
allele frequency: 1.656232402530723e-5
allele num: 120756
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+8C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+8C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+8C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+8C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+8C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+8C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-927G>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+8C>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+8C>G
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28470
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1073+8C>G
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

3-63996547-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996547
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996547
    reference: chr 3
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4372+7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-926A>G
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1073+7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*31+7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.956+7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1842+7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1232+7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.959+7T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2411+7T>C
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1073+7T>C
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-63996562-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996562
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996562
    reference: chr 3
allele count: 1
allele frequency: 8.273214640280627e-6
allele num: 120872
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4364A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2403A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.951A>G
  hgvsp: ENST00000394431.2:c.951A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1834A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1065A>G
  hgvsp: ENST00000295901.4:c.1065A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1224A>G
  hgvsp: ENST00000492933.1:c.1224A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.948A>G
  hgvsp: ENST00000482510.1:c.948A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-911T>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*23A>G
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu355Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/3-63996574-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996574
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996574
    reference: chr 3
allele count: 1
allele frequency: 8.271435424903638e-6
allele num: 120898
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1212T>G
  hgvsp: ENSP00000418695.1:p.Asn404Lys
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2391T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1053T>G
  hgvsp: ENSP00000295901.4:p.Asn351Lys
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4352T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.939T>G
  hgvsp: ENSP00000377952.2:p.Asn313Lys
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-899A>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*11T>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.936T>G
  hgvsp: ENSP00000419227.1:p.Asn312Lys
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1822T>G
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn351Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

3-63996574-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996574
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996574
    reference: chr 3
allele count: 3
allele frequency: 2.481430627471092e-5
allele num: 120898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.936T>A
  hgvsp: ENSP00000419227.1:p.Asn312Lys
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1053T>A
  hgvsp: ENSP00000295901.4:p.Asn351Lys
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-899A>T
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2391T>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1822T>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*11T>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.939T>A
  hgvsp: ENSP00000377952.2:p.Asn313Lys
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4352T>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1212T>A
  hgvsp: ENSP00000418695.1:p.Asn404Lys
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn351Lys
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-63996577-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996577
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996577
    reference: chr 3
allele count: 5
allele frequency: 4.135717712451819e-5
allele num: 120898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1819G>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.933G>T
  hgvsp: ENST00000482510.1:c.933G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4349G>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2388G>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-896C>A
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1209G>T
  hgvsp: ENST00000492933.1:c.1209G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1050G>T
  hgvsp: ENST00000295901.4:c.1050G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.936G>T
  hgvsp: ENST00000394431.2:c.936G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.*8G>T
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val350Val
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

3-63996592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996592
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996592
    reference: chr 3
allele count: 125
allele frequency: 1.033929428112955e-3
allele num: 120898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.408C>T
  hgvsp: ENSP00000418843.1:p.Ala137Val
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2373C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1035C>T
  hgvsp: ENST00000295901.4:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1194C>T
  hgvsp: ENST00000492933.1:c.1194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.918C>T
  hgvsp: ENST00000482510.1:c.918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1804C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4334C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.921C>T
  hgvsp: ENST00000394431.2:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-881G>A
  variant of: http://identifiers.org/hgnc/44125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21383
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10273
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9071
  bin: 9.75e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala137Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

3-63996597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996597
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996597
    reference: chr 3
allele count: 1
allele frequency: 8.277597510098669e-6
allele num: 120808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.916C>T
  hgvsp: ENSP00000377952.2:p.His306Tyr
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.403C>T
  hgvsp: ENST00000480205.1:c.403C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4329C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1030C>T
  hgvsp: ENSP00000295901.4:p.His344Tyr
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.913C>T
  hgvsp: ENSP00000419227.1:p.His305Tyr
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1189C>T
  hgvsp: ENSP00000418695.1:p.His397Tyr
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2368C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-876G>A
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1799C>T
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His344Tyr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

3-63996600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996600
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996600
    reference: chr 3
allele count: 2
allele frequency: 1.65576620581174e-5
allele num: 120790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2365C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1027C>T
  hgvsp: ENST00000295901.4:c.1027C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1186C>T
  hgvsp: ENST00000492933.1:c.1186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.400C>T
  hgvsp: ENST00000480205.1:c.400C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1796C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4326C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.910C>T
  hgvsp: ENST00000482510.1:c.910C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.913C>T
  hgvsp: ENST00000394431.2:c.913C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-873G>A
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8968
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu343Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

3-63996604-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996604
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996604
    reference: chr 3
allele count: 3
allele frequency: 2.484266313348791e-5
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4322G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1182G>A
  hgvsp: ENST00000492933.1:c.1182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.909G>A
  hgvsp: ENST00000394431.2:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1023G>A
  hgvsp: ENST00000295901.4:c.1023G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.906G>A
  hgvsp: ENST00000482510.1:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.396G>A
  hgvsp: ENSP00000418843.1:p.Gly133Glu
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1792G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2361G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-869C>T
  variant of: http://identifiers.org/hgnc/44125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2818
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly133Glu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

3-63996606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996606
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996606
    reference: chr 3
allele count: 136
allele frequency: 1.126461915647881e-3
allele num: 120732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1790G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.904G>A
  hgvsp: ENSP00000419227.1:p.Gly302Arg
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2359G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1180G>A
  hgvsp: ENSP00000418695.1:p.Gly394Arg
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4320G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.907G>A
  hgvsp: ENSP00000377952.2:p.Gly303Arg
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1021G>A
  hgvsp: ENSP00000295901.4:p.Gly341Arg
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.394G>A
  hgvsp: ENST00000480205.1:c.394G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-867C>T
  variant of: http://identifiers.org/hgnc/44125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21367
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10159
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12874
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9043
  bin: 9.75e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly341Arg
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-63996607-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996607
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996607
    reference: chr 3
allele count: 251
allele frequency: 2.079398217185274e-3
allele num: 120708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1179C>T
  hgvsp: ENST00000492933.1:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1020C>T
  hgvsp: ENST00000295901.4:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1789C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.903C>T
  hgvsp: ENST00000482510.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2358C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-866G>A
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.906C>T
  hgvsp: ENST00000394431.2:c.906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.393C>T
  hgvsp: ENSP00000418843.1:p.Pro132Leu
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4319C>T
  variant of: http://identifiers.org/hgnc/9564
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21381
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 12885
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro132Leu
num of homozygotes: 2
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

3-63996616-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996616
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996616
    reference: chr 3
allele count: 55
allele frequency: 4.562800730048117e-4
allele num: 120540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.894T>C
  hgvsp: ENST00000482510.1:c.894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4310T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1011T>C
  hgvsp: ENST00000295901.4:c.1011T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.897T>C
  hgvsp: ENST00000394431.2:c.897T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2349T>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-857A>G
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1170T>C
  hgvsp: ENST00000492933.1:c.1170T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.384T>C
  hgvsp: ENSP00000418843.1:p.Leu129Ser
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1780T>C
  variant of: http://identifiers.org/hgnc/9564
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12906
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8871
  bin: 9.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4017
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu129Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

3-63996622-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996622
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996622
    reference: chr 3
allele count: 2
allele frequency: 1.661515967168445e-5
allele num: 120372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.888C>T
  hgvsp: ENST00000482510.1:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1774C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.891C>T
  hgvsp: ENST00000394431.2:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-851G>A
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.378C>T
  hgvsp: ENSP00000418843.1:p.Pro127Leu
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1005C>T
  hgvsp: ENST00000295901.4:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2343C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1164C>T
  hgvsp: ENST00000492933.1:c.1164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4304C>T
  variant of: http://identifiers.org/hgnc/9564
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro127Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

3-63996625-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996625
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996625
    reference: chr 3
allele count: 4
allele frequency: 3.326348002528024e-5
allele num: 120252
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-848C>G
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.375G>C
  hgvsp: ENSP00000418843.1:p.Cys126Ser
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4301G>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1161G>C
  hgvsp: ENST00000492933.1:c.1161G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.885G>C
  hgvsp: ENST00000482510.1:c.885G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1771G>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2340G>C
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1002G>C
  hgvsp: ENST00000295901.4:c.1002G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.888G>C
  hgvsp: ENST00000394431.2:c.888G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys126Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

3-63996627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996627
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996627
    reference: chr 3
allele count: 2
allele frequency: 1.66461364317342e-5
allele num: 120148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.883C>T
  hgvsp: ENST00000482510.1:c.883C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1159C>T
  hgvsp: ENST00000492933.1:c.1159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2338C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4299C>T
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-846G>A
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.886C>T
  hgvsp: ENST00000394431.2:c.886C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.1000C>T
  hgvsp: ENST00000295901.4:c.1000C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.373C>T
  hgvsp: ENST00000480205.1:c.373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1769C>T
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu334Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-63996631-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996631
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996631
    reference: chr 3
allele count: 1
allele frequency: 8.337780149413021e-6
allele num: 119936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1765G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.879G>A
  hgvsp: ENST00000482510.1:c.879G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-842C>T
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4295G>A
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1155G>A
  hgvsp: ENST00000492933.1:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.369G>A
  hgvsp: ENSP00000418843.1:p.Gly124Glu
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.996G>A
  hgvsp: ENST00000295901.4:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.882G>A
  hgvsp: ENST00000394431.2:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2334G>A
  variant of: http://identifiers.org/hgnc/9564
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly124Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-63996635-A-ATTTAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996635
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996640
    reference: chr 3
allele count: 1
allele frequency: 8.357849692431131e-6
allele num: 119648
alternate allele: ATTTAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4295-9_4295-5dupCTAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.369-9_369-5dupCTAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-837_2105-833dupTTTAG
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.879-9_879-5dupCTAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.996-9_996-5dupCTAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1765-9_1765-5dupCTAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.882-9_882-5dupCTAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1155-9_1155-5dupCTAAA
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2325_2329dupCTAAA
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12783
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28066
  bin: 6.25e1
  variant carriers: 0
hgvs: c.996-9_996-5dupCTAAA
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

3-63996638-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63996638
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 63996638
    reference: chr 3
allele count: 1
allele frequency: 8.361204013377926e-6
allele num: 119600
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239653
  ensembl transcript: ENST00000472046
  gene symbol: PSMD6-AS2
  hgvsc: ENST00000472046.1:n.2105-835T>C
  variant of: http://identifiers.org/hgnc/44125
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000476464
  gene symbol: PSMD6
  hgvsc: ENST00000476464.1:n.1765-7A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000295901
  ensembl transcript: ENST00000295901
  gene symbol: PSMD6
  hgvsc: ENST00000295901.4:c.996-7A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000377952
  ensembl transcript: ENST00000394431
  gene symbol: PSMD6
  hgvsc: ENST00000394431.2:c.882-7A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000467853
  gene symbol: PSMD6
  hgvsc: ENST00000467853.1:n.4295-7A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000419227
  ensembl transcript: ENST00000482510
  gene symbol: PSMD6
  hgvsc: ENST00000482510.1:c.879-7A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418695
  ensembl transcript: ENST00000492933
  gene symbol: PSMD6
  hgvsc: ENST00000492933.1:c.1155-7A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163636
  ensembl protein: ENSP00000418843
  ensembl transcript: ENST00000480205
  gene symbol: PSMD6
  hgvsc: ENST00000480205.1:c.369-7A>G
  variant of: http://identifiers.org/hgnc/9564
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163636
  ensembl transcript: ENST00000463139
  gene symbol: PSMD6
  hgvsc: ENST00000463139.1:n.2327A>G
  variant of: http://identifiers.org/hgnc/9564
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
hgvs: c.996-7A>G
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.113e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: -1.155e0

DP
type: SiteQuality
SIO_000300: 6.86824e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-2

DP
type: SiteQuality
SIO_000300: 6.81365e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

GenotypeQuality
all individuals: 432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3416
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.714932126696833e-4
allele num: 11050
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 6.81365e5

GenotypeQuality
all individuals: 335
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4055
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.846153846153846e-4
allele num: 2600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8032
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 6.80639e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.485e0

QD
type: SiteQuality
SIO_000300: 2.603e1

GenotypeQuality
all individuals: 8105
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.245640259093174e-4
allele num: 8028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.783e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.045e0

VQSLOD
type: SiteQuality
SIO_000300: 3.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.25e-2

QD
type: SiteQuality
SIO_000300: 1.557e1

DP
type: SiteQuality
SIO_000300: 6.811e5

MQRankSum
type: SiteQuality
SIO_000300: -1.814e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

GenotypeQuality
all individuals: 296
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5051
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8559
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3231
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2979
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4915
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7464
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.077792553191489e-5
allele num: 48128
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.186441e6

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8030
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12921
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6243
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4867
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.095507228570259e-5
allele num: 48834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.246351e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

QD
type: SiteQuality
SIO_000300: 1.157e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

GenotypeQuality
all individuals: 645
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12299
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4971
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4937
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 562
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8674
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.128599942971201e-5
allele num: 14028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8884
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.031e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

QD
type: SiteQuality
SIO_000300: 1.694e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.37496e6

VQSLOD
type: SiteQuality
SIO_000300: -4.35e-1

GenotypeQuality
all individuals: 3048
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4947
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 766
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.906795820303562e-5
allele num: 52444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.362e1

DP
type: SiteQuality
SIO_000300: 1.414649e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

FS
type: SiteQuality
SIO_000300: 3.128e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 4.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 368
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.553498704183635e-5
allele num: 54020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9488
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

MQ
type: SiteQuality
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

DP
type: SiteQuality
SIO_000300: 1.458963e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7058
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54366
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.848376934666484e-5
allele num: 14602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.207e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQRankSum
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

QD
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SIO_000300: 1.722e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.468361e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.103752759381898e-4
allele num: 9060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.826217173746302e-5
allele num: 54758
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.479193e6

ClippingRankSum
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SIO_000300: -1.586e0

MQ
type: SiteQuality
SIO_000300: 5.77e1

FS
type: SiteQuality
SIO_000300: 2.059e0

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 1.336e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.705786026200873e-5
allele num: 58624
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15328
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.26e0

MQRankSum
type: SiteQuality
SIO_000300: 8.21e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.568763e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61610
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.265502404454569e-4
allele num: 15804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.956e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.59e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
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SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.627654e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 3
allele frequency: 2.980329823167097e-4
allele num: 10066
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 2.456097261451553e-4
allele num: 16286
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64998
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Other
type: Population
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
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allele frequency: 8.898380494749955e-5
allele num: 11238
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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DP
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VQSLOD
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MQ
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.57763671875e-5
allele num: 65536
num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
type: Population
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Other
type: Population
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African
type: Population
allele count: 1
allele frequency: 9.854158454867954e-5
allele num: 10148
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.059320750143909e-5
allele num: 66014
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.970443349753695e-4
allele num: 10150
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.038e1

DP
type: SiteQuality
SIO_000300: 1.711297e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.818e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e-1

FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.515105602860519e-5
allele num: 66002
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.621e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.669e0

MQ
type: SiteQuality
SIO_000300: 5.801e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
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SIO_000300: 9.24e0

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

FS
type: SiteQuality
SIO_000300: 1.0644e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517542794706811e-5
allele num: 65896
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.388e1

MQRankSum
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SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 1.174e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.936e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.706059e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.84016973125884e-5
allele num: 11312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: 6.21e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.936e0

FS
type: SiteQuality
SIO_000300: 1.174e0

DP
type: SiteQuality
SIO_000300: 1.706059e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.702299e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 3.319e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.609e0

QD
type: SiteQuality
SIO_000300: 6.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.074e0

VQSLOD
type: SiteQuality
SIO_000300: -9.316e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.591400461557148e-5
allele num: 65864
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 3.991e0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.024e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

DP
type: SiteQuality
SIO_000300: 1.700416e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10068
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -6.22e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

MQRankSum
type: SiteQuality
SIO_000300: -3.399e0

DP
type: SiteQuality
SIO_000300: 1.698552e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65812
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8262
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6528
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South Asian
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allele frequency: 1.217433649866082e-4
allele num: 16428
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MQRankSum
type: SiteQuality
SIO_000300: -1.642e0

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.022e0

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.6e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

QD
type: SiteQuality
SIO_000300: 1.707e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 133
allele frequency: 1.57098984171982e-2
allele num: 8466
num of homozygotes: 1

South Asian
type: Population
allele count: 3
allele frequency: 1.826372823572385e-4
allele num: 16426
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.977724741447892e-4
allele num: 10056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.061849357011635e-4
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.12630236019562e-4
allele num: 65842
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.33e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.69176e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.36e-1

QD
type: SiteQuality
SIO_000300: 2.4e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5041
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.073489219556635e-5
allele num: 65860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 5.05e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.558e1

DP
type: SiteQuality
SIO_000300: 1.693829e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65842
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087168249330411e-5
allele num: 16428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

FS
type: SiteQuality
SIO_000300: 9.478999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 5.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.46e0

DP
type: SiteQuality
SIO_000300: 1.692606e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1774
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GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.841732979664014e-5
allele num: 11310
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 1.692606e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 5.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

FS
type: SiteQuality
SIO_000300: 9.478999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.81e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 779
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variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521653123953863e-5
allele num: 65718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.115e0

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.057e1

QD
type: SiteQuality
SIO_000300: 6.29e0

DP
type: SiteQuality
SIO_000300: 1.689907e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5045
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variant carriers: 1

GenotypeQuality
all individuals: 1950
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521051350693599e-5
allele num: 65744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.158e0

QD
type: SiteQuality
SIO_000300: 6.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.688358e6

MQRankSum
type: SiteQuality
SIO_000300: -2.657e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQ
type: SiteQuality
SIO_000300: 5.118e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.964129135113592e-5
allele num: 10036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

FS
type: SiteQuality
SIO_000300: 8.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.688843e6

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 2.086e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.563848236833298e-5
allele num: 65734
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.043954705953976e-4
allele num: 16426
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

FS
type: SiteQuality
SIO_000300: 2.877e0

DP
type: SiteQuality
SIO_000300: 1.688894e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.693e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 2.686e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521838380763963e-5
allele num: 65710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 3.635e0

QD
type: SiteQuality
SIO_000300: 1.332e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

DP
type: SiteQuality
SIO_000300: 1.692719e6

VQSLOD
type: SiteQuality
SIO_000300: -5.826e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

GenotypeQuality
all individuals: 1397
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1180
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GenotypeQuality
all individuals: 1947
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GenotypeQuality
all individuals: 2074
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GenotypeQuality
all individuals: 871
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.956192751891676e-5
allele num: 10044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65678
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.695466e6

VQSLOD
type: SiteQuality
SIO_000300: 9.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.381e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

MQRankSum
type: SiteQuality
SIO_000300: 5.69e-1

FS
type: SiteQuality
SIO_000300: 5.031e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.711e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5597
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218917601170161e-4
allele num: 16408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.38e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

FS
type: SiteQuality
SIO_000300: 1.091e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 1.697242e6

GenotypeQuality
all individuals: 1061
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.217544820868718e-4
allele num: 65706
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

DP
type: SiteQuality
SIO_000300: 1.697242e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 1.38e1

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

FS
type: SiteQuality
SIO_000300: 1.091e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.206854936036688e-4
allele num: 8286
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.065e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.713751e6

VQSLOD
type: SiteQuality
SIO_000300: -6.905e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.618e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

FS
type: SiteQuality
SIO_000300: 1.298e0

QD
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 954
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.31957773512476e-3
allele num: 8336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.724863e6

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

QD
type: SiteQuality
SIO_000300: 1.403e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.275e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 956
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.910802775024777e-5
allele num: 10090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.68e0

FS
type: SiteQuality
SIO_000300: 6.855e0

VQSLOD
type: SiteQuality
SIO_000300: -7.171e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.97e-1

QD
type: SiteQuality
SIO_000300: 1.791e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.730173e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 374

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 83
allele frequency: 1.261781696564305e-2
allele num: 6578
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.497114880223815e-4
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.871990604815032e-4
allele num: 10218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 281
allele frequency: 4.239973443582702e-3
allele num: 66274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

MQ
type: SiteQuality
SIO_000300: 5.512e1

QD
type: SiteQuality
SIO_000300: 1.352e1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

FS
type: SiteQuality
SIO_000300: 4.4e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

QD
type: SiteQuality
SIO_000300: 1.505e1

DP
type: SiteQuality
SIO_000300: 1.985946e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
type: Population
allele count: 2
allele frequency: 1.217433649866082e-4
allele num: 16428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013409673045051e-5
allele num: 66370
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.985946e6

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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QD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11466
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African
type: Population
allele count: 1
allele frequency: 9.773260359655981e-5
allele num: 10232
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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East Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 9.93e-1

BaseQRankSum
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FS
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SIO_000300: 2.769e0

VQSLOD
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ClippingRankSum
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SIO_000300: -1.478e0

DP
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SIO_000300: 1.994009e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
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QD
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SIO_000300: 1.778e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.012138919846983e-5
allele num: 66398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10234
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 1.59e0

MQRankSum
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SIO_000300: 1.09e0

BaseQRankSum
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SIO_000300: -3.571e0

FS
type: SiteQuality
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QD
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VQSLOD
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MQ
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.995044e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.825039542523421e-4
allele num: 16438
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.36e-1

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.98e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.782e0

QD
type: SiteQuality
SIO_000300: 1.502e1

DP
type: SiteQuality
SIO_000300: 1.995642e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505162708088744e-5
allele num: 66438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.282e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.794e0

DP
type: SiteQuality
SIO_000300: 1.997145e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.54e-1

QD
type: SiteQuality
SIO_000300: 1.549e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.775171065493646e-5
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e-1

QD
type: SiteQuality
SIO_000300: 1.549e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e-1

FS
type: SiteQuality
SIO_000300: 6.942e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

DP
type: SiteQuality
SIO_000300: 1.997729e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.68e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.505298651252408e-5
allele num: 66432
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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DP
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VQSLOD
type: SiteQuality
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MQRankSum
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MQ
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FS
type: SiteQuality
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.081245439065921e-5
allele num: 16444
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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Other
type: Population
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European (Non-Finnish)
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InbreedingCoeff
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66466
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African
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allele num: 10230
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European (Finnish)
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South Asian
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East Asian
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Other
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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QD
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FS
type: SiteQuality
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 1.955034213098729e-4
allele num: 10230
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: -2.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.196e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 5.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.001999e6

QD
type: SiteQuality
SIO_000300: 1.081e1

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 2.001844e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

QD
type: SiteQuality
SIO_000300: 1.225e1

VQSLOD
type: SiteQuality
SIO_000300: 2.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.55e-1

FS
type: SiteQuality
SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4042
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.367e1

FS
type: SiteQuality
SIO_000300: 8.231999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

DP
type: SiteQuality
SIO_000300: 2.005004e6

GenotypeQuality
all individuals: 318
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

DP
type: SiteQuality
SIO_000300: 2.006078e6

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

GenotypeQuality
all individuals: 2072
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 50
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9030
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.508972855983407e-5
allele num: 66534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 2.006078e6

MQ
type: SiteQuality
SIO_000300: 5.924e1

QD
type: SiteQuality
SIO_000300: 1.325e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 37
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.514728868582422e-5
allele num: 66536
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.159e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.432e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 1.104e0

MQRankSum
type: SiteQuality
SIO_000300: 8.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.006306e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 125
allele frequency: 1.224289911851126e-2
allele num: 10210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.009654e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.185e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.906e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

FS
type: SiteQuality
SIO_000300: 8.7e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.003e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 7.73e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.001808e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4041
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8969
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1302
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00815209216978e-5
allele num: 66486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.441e0

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.59e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

DP
type: SiteQuality
SIO_000300: 2.001342e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29054
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8416
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 7
allele frequency: 6.904714933912014e-4
allele num: 10138
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.31858407079646e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 103
allele frequency: 1.549384758867595e-3
allele num: 66478
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.390337156760514e-3
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.059642749016046e-3
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

FS
type: SiteQuality
SIO_000300: 5.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 2.004959e6

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

QD
type: SiteQuality
SIO_000300: 1.122e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4015
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29067
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9063
bin: 9.75e1
variant carriers: 249

GenotypeQuality
all individuals: 2051
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314279102059708e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 219
allele frequency: 3.294719422295772e-3
allele num: 66470
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.469794578825817e-4
allele num: 16454
num of homozygotes: 1

African
type: Population
allele count: 6
allele frequency: 5.924170616113745e-4
allele num: 10128
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.303894297635605e-3
allele num: 11504
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

FS
type: SiteQuality
SIO_000300: 1.136e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

DP
type: SiteQuality
SIO_000300: 2.007402e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

QD
type: SiteQuality
SIO_000300: 1.223e1

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8399
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 8
allele frequency: 6.960153123368715e-4
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 45
allele frequency: 6.776700198783206e-4
allele num: 66404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.988862370723946e-4
allele num: 10056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

VQSLOD
type: SiteQuality
SIO_000300: 4.44e0

DP
type: SiteQuality
SIO_000300: 1.995348e6

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8823
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 707
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variant carriers: 0

GenotypeQuality
all individuals: 2806
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 4011
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variant carriers: 0

GenotypeQuality
all individuals: 8388
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variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015499668295036e-5
allele num: 66324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

DP
type: SiteQuality
SIO_000300: 1.990955e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 4.911e0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.56e-1

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8823
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
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variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 3998
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.483713638738896e-4
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.935e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

DP
type: SiteQuality
SIO_000300: 1.988823e6

FS
type: SiteQuality
SIO_000300: 3.064e0

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
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GenotypeQuality
all individuals: 8363
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GenotypeQuality
all individuals: 3994
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GenotypeQuality
all individuals: 100
bin: 3.25e1
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GenotypeQuality
all individuals: 1291
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GenotypeQuality
all individuals: 879
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8820
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2794
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50993537476596e-5
allele num: 66228
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.534e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 1.0101e1

DP
type: SiteQuality
SIO_000300: 1.987088e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

QD
type: SiteQuality
SIO_000300: 1.634e1

GenotypeQuality
all individuals: 8323
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2052
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 28501
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 8819
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3178
bin: 8.25e1
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GenotypeQuality
all individuals: 1289
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3990
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447535e-5
allele num: 66140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.86e-1

QD
type: SiteQuality
SIO_000300: 3.053e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -6.522e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

MQ
type: SiteQuality
SIO_000300: 5.32e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.983167e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.375e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.204e0

GenotypeQuality
all individuals: 3177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2775
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8816
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3984
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.004e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.52e-1

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -5.355e0

MQ
type: SiteQuality
SIO_000300: 4.94e1

DP
type: SiteQuality
SIO_000300: 1.977228e6

GenotypeQuality
all individuals: 243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3981
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27973
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 8.25e1
variant carriers: 0