3-12447606-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447606
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447607
    reference: chr 3
allele count: 6
allele frequency: 6.58443439708529e-5
allele num: 91124
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+31dupG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+31dupG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+31dupG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+31dupG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+31dupG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.866dupG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+31dupG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+31dupG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+31dupG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+31dupG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+31dupG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.971dupG
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15761
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14096
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

3-12447611-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447611
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447611
    reference: chr 3
allele count: 1
allele frequency: 1.204906378774369e-5
allele num: 82994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+31G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+31G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+31G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.971G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+31G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+31G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+31G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.866G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+31G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+31G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+31G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+31G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

3-12447615-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447615
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447615
    reference: chr 3
allele count: 33
allele frequency: 4.22513571648059e-4
allele num: 78104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+35C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+35C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.975C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+35C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+35C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+35C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.870C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+35C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+35C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+35C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+35C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+35C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18391
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18179
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

3-12447616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447616
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447616
    reference: chr 3
allele count: 57
allele frequency: 7.461709647859667e-4
allele num: 76390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+36G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+36G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+36G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+36G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+36G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.976G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.871G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+36G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+36G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+36G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+36G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+36G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18838
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

3-12447617-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447617
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447617
    reference: chr 3
allele count: 1
allele frequency: 1.328479953237506e-5
allele num: 75274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+37G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+37G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+37G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+37G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+37G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.977G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+37G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+37G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+37G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+37G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.872G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+37G>C
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS

3-12447627-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447627
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447627
    reference: chr 3
allele count: 1
allele frequency: 1.589572405023049e-5
allele num: 62910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+47T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+47T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+47T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+47T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.987T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+47T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+47T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.882T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+47T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+47T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+47T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+47T>C
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

3-12447630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447630
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447630
    reference: chr 3
allele count: 1
allele frequency: 1.666555562962469e-5
allele num: 60004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+50G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+50G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+50G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+50G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+50G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+50G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.885G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+50G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.990G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+50G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+50G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+50G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

3-12447649-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447649
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447649
    reference: chr 3
allele count: 1
allele frequency: 2.37034227742486e-5
allele num: 42188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+69A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+69A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.1009A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+69A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+69A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+69A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+69A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+69A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+69A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.904A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+69A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+69A>G
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

3-12447651-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447651
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447651
    reference: chr 3
allele count: 3
allele frequency: 7.313862206836023e-5
allele num: 41018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+71A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.1011A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+71A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.906A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+71A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+71A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+71A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+71A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+71A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+71A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+71A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+71A>G
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19780
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7946
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-12447653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447653
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447653
    reference: chr 3
allele count: 2
allele frequency: 5.293245818335804e-5
allele num: 37784
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+73G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+73G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+73G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+73G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+73G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.908G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+73G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+73G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.1013G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+73G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+73G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+73G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21822
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

3-12447662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447662
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447662
    reference: chr 3
allele count: 2
allele frequency: 5.97692905385213e-5
allele num: 33462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+82C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+82C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+82C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+82C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+82C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+82C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+82C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+82C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+82C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.1022C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.917C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+82C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16065
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-12447663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447663
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447663
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 32308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+83G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+83G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+83G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.918G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+83G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+83G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.1023G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+83G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+83G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+83G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+83G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+83G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 15561
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26079
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

3-12447667-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447667
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447667
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 30538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+87C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+87C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.922C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+87C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+87C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+87C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.1027C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+87C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+87C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+87C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+87C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+87C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

3-12447673-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447673
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447673
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 29332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+93C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+93C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.1033C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+93C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+93C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+93C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+93C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+93C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+93C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.928C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+93C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+93C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 28344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13912
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS

3-12447675-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447675
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447675
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 28968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+95C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+95C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+95C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.930C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+95C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.1035C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+95C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+95C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+95C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+95C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+95C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+95C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28602
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-12447679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447679
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447679
    reference: chr 3
allele count: 27
allele frequency: 9.540636042402827e-4
allele num: 28300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+99C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+99C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+99C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.934C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+99C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.1039C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+99C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+99C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+99C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+99C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+99C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+99C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13251
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28889
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

3-12447693-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12447693
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12447693
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 26620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.735+113A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+113A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.735+113A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.819+113A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000477039
  gene symbol: PPARG
  hgvsc: ENST00000477039.1:n.1053A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*957+113A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.735+113A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+113A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132170
  ensembl transcript: ENST00000497594
  gene symbol: PPARG
  hgvsc: ENST00000497594.1:n.948A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.735+113A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.753+113A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*317+113A>G
  variant of: http://identifiers.org/hgnc/9236
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13341
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-12458167-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458167
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458167
    reference: chr 3
allele count: 1
allele frequency: 1.199904007679386e-5
allele num: 83340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10587T>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.736-36T>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.736-36T>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*318-36T>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.754-36T>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*958-36T>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.820-36T>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.736-36T>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10587T>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.736-36T>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5612
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-12458170-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458170
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458170
    reference: chr 3
allele count: 1
allele frequency: 1.188410619637297e-5
allele num: 84146
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.754-33A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10590A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.736-33A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.820-33A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*318-33A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.736-33A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*958-33A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.736-33A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10590A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.736-33A>G
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9772
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

3-12458171-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458171
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458171
    reference: chr 3
allele count: 1
allele frequency: 1.187028156307868e-5
allele num: 84244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10591A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.736-32A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.754-32A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*318-32A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10591A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.736-32A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*958-32A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.736-32A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.736-32A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.820-32A>G
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16732
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-12458180-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458180
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458180
    reference: chr 3
allele count: 1
allele frequency: 1.139912910653626e-5
allele num: 87726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10600C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.754-23C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.736-23C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.736-23C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.820-23C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*958-23C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*318-23C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10600C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.736-23C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.736-23C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16026
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

3-12458181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458181
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458181
    reference: chr 3
allele count: 3
allele frequency: 3.390060343074107e-5
allele num: 88494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10601G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.754-22G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10601G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.736-22G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.736-22G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.736-22G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*318-22G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.736-22G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.820-22G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*958-22G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18286
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

3-12458181-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458181
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458182
    reference: chr 3
allele count: 1
allele frequency: 1.130020114358036e-5
allele num: 88494
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.736-18dupT
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*958-18dupT
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.754-18dupT
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.820-18dupT
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10605dupT
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10605dupT
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.736-18dupT
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*318-18dupT
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.736-18dupT
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.736-18dupT
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5915
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-12458183-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458183
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458183
    reference: chr 3
allele count: 1
allele frequency: 1.107027409998672e-5
allele num: 90332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.736-20T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.736-20T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*318-20T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.754-20T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10603T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.736-20T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10603T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.820-20T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.736-20T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*958-20T>C
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20715
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15306
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

3-12458190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458190
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458190
    reference: chr 3
allele count: 2
allele frequency: 2.082639120293236e-5
allele num: 96032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.754-13G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.736-13G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10610G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*318-13G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.736-13G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.736-13G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.736-13G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*958-13G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10610G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.820-13G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6415
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7612
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12691
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

3-12458196-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458196
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458196
    reference: chr 3
allele count: 1
allele frequency: 9.861932938856015e-6
allele num: 101400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.736-7T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.736-7T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*958-7T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.754-7T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.736-7T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.736-7T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10616T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10616T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.820-7T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*318-7T>C
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 7.75e1
  variant carriers: 0
hgvs: c.820-7T>C
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

3-12458202-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458202
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458202
    reference: chr 3
allele count: 1
allele frequency: 9.381919165384472e-6
allele num: 106588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.736-1G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.820-1G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*958-1G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10622G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10622G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.754-1G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.736-1G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*318-1G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.736-1G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.736-1G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7589
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 2.75e1
  variant carriers: 0
hgvs: c.820-1G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-12458209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458209
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458209
    reference: chr 3
allele count: 13
allele frequency: 1.160009993932255e-4
allele num: 112068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.760G>A
  hgvsp: ENSP00000380221.2:p.Val254Ile
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.742G>A
  hgvsp: ENSP00000380210.2:p.Val248Ile
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10629G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.742G>A
  hgvsp: ENSP00000312472.6:p.Val248Ile
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.742G>A
  hgvsp: ENSP00000380207.2:p.Val248Ile
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.826G>A
  hgvsp: ENSP00000287820.6:p.Val276Ile
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*964G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.742G>A
  hgvsp: ENSP00000380205.2:p.Val248Ile
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*324G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10629G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38866
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9041
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44445
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val276Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-12458239-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458239
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458239
    reference: chr 3
allele count: 1
allele frequency: 8.334444592612349e-6
allele num: 119984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*994G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.772G>A
  hgvsp: ENSP00000380210.2:p.Gly258Arg
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10659G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*354G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.772G>A
  hgvsp: ENSP00000380207.2:p.Gly258Arg
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10659G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.772G>A
  hgvsp: ENSP00000380205.2:p.Gly258Arg
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.856G>A
  hgvsp: ENSP00000287820.6:p.Gly286Arg
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.790G>A
  hgvsp: ENSP00000380221.2:p.Gly264Arg
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.772G>A
  hgvsp: ENSP00000312472.6:p.Gly258Arg
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly286Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

3-12458256-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458256
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458256
    reference: chr 3
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.807G>A
  hgvsp: ENST00000397026.2:c.807G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.789G>A
  hgvsp: ENST00000397010.2:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.789G>A
  hgvsp: ENST00000397012.2:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.789G>A
  hgvsp: ENST00000397015.2:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1011G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.873G>A
  hgvsp: ENST00000287820.6:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.789G>A
  hgvsp: ENST00000309576.6:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10676G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10676G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*371G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys291Lys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-12458259-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458259
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458259
    reference: chr 3
allele count: 1
allele frequency: 8.275816409288777e-6
allele num: 120834
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.792C>G
  hgvsp: ENSP00000380207.2:p.Phe264Leu
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*374C>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10679C>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.876C>G
  hgvsp: ENSP00000287820.6:p.Phe292Leu
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.810C>G
  hgvsp: ENSP00000380221.2:p.Phe270Leu
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.792C>G
  hgvsp: ENSP00000312472.6:p.Phe264Leu
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10679C>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.792C>G
  hgvsp: ENSP00000380205.2:p.Phe264Leu
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.792C>G
  hgvsp: ENSP00000380210.2:p.Phe264Leu
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1014C>G
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe292Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-12458274-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458274
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458274
    reference: chr 3
allele count: 1
allele frequency: 8.258183860205463e-6
allele num: 121092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.807C>A
  hgvsp: ENST00000397012.2:c.807C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.807C>A
  hgvsp: ENST00000309576.6:c.807C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.825C>A
  hgvsp: ENST00000397026.2:c.825C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.807C>A
  hgvsp: ENST00000397010.2:c.807C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1029C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*389C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.891C>A
  hgvsp: ENST00000287820.6:c.891C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10694C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10694C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.807C>A
  hgvsp: ENST00000397015.2:c.807C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro297Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

3-12458274-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458274
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458274
    reference: chr 3
allele count: 495
allele frequency: 4.087801010801704e-3
allele num: 121092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10694C>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.825C>G
  hgvsp: ENST00000397026.2:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.807C>G
  hgvsp: ENST00000397012.2:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*389C>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.807C>G
  hgvsp: ENST00000397015.2:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1029C>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.807C>G
  hgvsp: ENST00000397010.2:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10694C>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.807C>G
  hgvsp: ENST00000309576.6:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.891C>G
  hgvsp: ENST00000287820.6:c.891C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 12138
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41900
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro297Pro
num of homozygotes: 12
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

3-12458274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458274
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458274
    reference: chr 3
allele count: 8
allele frequency: 6.606547088164371e-5
allele num: 121092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.807C>T
  hgvsp: ENST00000397010.2:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.825C>T
  hgvsp: ENST00000397026.2:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.807C>T
  hgvsp: ENST00000397012.2:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.807C>T
  hgvsp: ENST00000397015.2:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1029C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.807C>T
  hgvsp: ENST00000309576.6:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.891C>T
  hgvsp: ENST00000287820.6:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10694C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*389C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10694C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41900
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro297Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

3-12458283-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458283
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458283
    reference: chr 3
allele count: 4
allele frequency: 3.30114714863415e-5
allele num: 121170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.816G>A
  hgvsp: ENST00000397015.2:c.816G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.900G>A
  hgvsp: ENST00000287820.6:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.834G>A
  hgvsp: ENST00000397026.2:c.834G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.816G>A
  hgvsp: ENST00000397012.2:c.816G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10703G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.816G>A
  hgvsp: ENST00000309576.6:c.816G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.816G>A
  hgvsp: ENST00000397010.2:c.816G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*398G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1038G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10703G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu300Glu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-12458288-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458288
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458288
    reference: chr 3
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10708G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.821G>C
  hgvsp: ENSP00000380205.2:p.Ser274Thr
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.821G>C
  hgvsp: ENSP00000380210.2:p.Ser274Thr
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.905G>C
  hgvsp: ENSP00000287820.6:p.Ser302Thr
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10708G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.821G>C
  hgvsp: ENSP00000312472.6:p.Ser274Thr
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*403G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.821G>C
  hgvsp: ENSP00000380207.2:p.Ser274Thr
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.839G>C
  hgvsp: ENSP00000380221.2:p.Ser280Thr
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1043G>C
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser302Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

3-12458306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458306
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458306
    reference: chr 3
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.857G>A
  hgvsp: ENSP00000380221.2:p.Arg286His
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.839G>A
  hgvsp: ENSP00000380205.2:p.Arg280His
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.839G>A
  hgvsp: ENSP00000312472.6:p.Arg280His
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.923G>A
  hgvsp: ENSP00000287820.6:p.Arg308His
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1061G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10726G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.839G>A
  hgvsp: ENSP00000380210.2:p.Arg280His
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.839G>A
  hgvsp: ENSP00000380207.2:p.Arg280His
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10726G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*421G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg308His
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-12458310-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458310
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458310
    reference: chr 3
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.843C>A
  hgvsp: ENST00000397015.2:c.843C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.927C>A
  hgvsp: ENST00000287820.6:c.927C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10730C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.861C>A
  hgvsp: ENST00000397026.2:c.861C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1065C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.843C>A
  hgvsp: ENST00000397010.2:c.843C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*425C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.843C>A
  hgvsp: ENST00000397012.2:c.843C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10730C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.843C>A
  hgvsp: ENST00000309576.6:c.843C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile309Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-12458317-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458317
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458317
    reference: chr 3
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.850G>A
  hgvsp: ENSP00000380205.2:p.Gly284Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.850G>A
  hgvsp: ENSP00000380207.2:p.Gly284Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10737G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.868G>A
  hgvsp: ENSP00000380221.2:p.Gly290Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.850G>A
  hgvsp: ENSP00000380210.2:p.Gly284Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.934G>A
  hgvsp: ENSP00000287820.6:p.Gly312Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*432G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1072G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.850G>A
  hgvsp: ENSP00000312472.6:p.Gly284Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10737G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly312Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-12458331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458331
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458331
    reference: chr 3
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1086C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10751C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10751C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.864C>T
  hgvsp: ENST00000309576.6:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.948C>T
  hgvsp: ENST00000287820.6:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.864C>T
  hgvsp: ENST00000397015.2:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.864C>T
  hgvsp: ENST00000397012.2:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.882C>T
  hgvsp: ENST00000397026.2:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*446C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.864C>T
  hgvsp: ENST00000397010.2:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51436
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg316Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

3-12458334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458334
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458334
    reference: chr 3
allele count: 2
allele frequency: 1.649076517150396e-5
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.867C>T
  hgvsp: ENST00000397012.2:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.951C>T
  hgvsp: ENST00000287820.6:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*449C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.867C>T
  hgvsp: ENST00000309576.6:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.867C>T
  hgvsp: ENST00000397015.2:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.885C>T
  hgvsp: ENST00000397026.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.867C>T
  hgvsp: ENST00000397010.2:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10754C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10754C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1089C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser317Ser
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

3-12458335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458335
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458335
    reference: chr 3
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10755G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.952G>A
  hgvsp: ENSP00000287820.6:p.Val318Met
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*450G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10755G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.868G>A
  hgvsp: ENSP00000380210.2:p.Val290Met
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.868G>A
  hgvsp: ENSP00000380205.2:p.Val290Met
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1090G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.868G>A
  hgvsp: ENSP00000380207.2:p.Val290Met
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.886G>A
  hgvsp: ENSP00000380221.2:p.Val296Met
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.868G>A
  hgvsp: ENSP00000312472.6:p.Val290Met
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val318Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

3-12458349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458349
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458349
    reference: chr 3
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.966G>A
  hgvsp: ENST00000287820.6:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.882G>A
  hgvsp: ENST00000397012.2:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10769G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.882G>A
  hgvsp: ENST00000397010.2:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1104G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10769G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.882G>A
  hgvsp: ENST00000397015.2:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.900G>A
  hgvsp: ENST00000397026.2:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.882G>A
  hgvsp: ENST00000309576.6:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*464G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln322Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

3-12458359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458359
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458359
    reference: chr 3
allele count: 2
allele frequency: 1.648695881557688e-5
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.976G>A
  hgvsp: ENSP00000287820.6:p.Glu326Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.892G>A
  hgvsp: ENSP00000380210.2:p.Glu298Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.892G>A
  hgvsp: ENSP00000380205.2:p.Glu298Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.910G>A
  hgvsp: ENSP00000380221.2:p.Glu304Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.892G>A
  hgvsp: ENSP00000380207.2:p.Glu298Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10779G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.892G>A
  hgvsp: ENSP00000312472.6:p.Glu298Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1114G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*474G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10779G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4249
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu326Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

3-12458364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458364
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458364
    reference: chr 3
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1119T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.897T>C
  hgvsp: ENST00000397015.2:c.897T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.981T>C
  hgvsp: ENST00000287820.6:c.981T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.897T>C
  hgvsp: ENST00000309576.6:c.897T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.897T>C
  hgvsp: ENST00000397010.2:c.897T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.915T>C
  hgvsp: ENST00000397026.2:c.915T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10784T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10784T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*479T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.897T>C
  hgvsp: ENST00000397012.2:c.897T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr327Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/3-12458367-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458367
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458367
    reference: chr 3
allele count: 24
allele frequency: 1.978467676784331e-4
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.918C>A
  hgvsp: ENST00000397026.2:c.918C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10787C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10787C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.984C>A
  hgvsp: ENST00000287820.6:c.984C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.900C>A
  hgvsp: ENST00000397012.2:c.900C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.900C>A
  hgvsp: ENST00000309576.6:c.900C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*482C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.900C>A
  hgvsp: ENST00000397015.2:c.900C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.900C>A
  hgvsp: ENST00000397010.2:c.900C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1122C>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala328Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

3-12458374-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458374
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458374
    reference: chr 3
allele count: 5
allele frequency: 4.121943578836293e-5
allele num: 121302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.925A>G
  hgvsp: ENSP00000380221.2:p.Ile309Val
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.907A>G
  hgvsp: ENSP00000312472.6:p.Ile303Val
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.907A>G
  hgvsp: ENSP00000380207.2:p.Ile303Val
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.907A>G
  hgvsp: ENSP00000380205.2:p.Ile303Val
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*489A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.991A>G
  hgvsp: ENSP00000287820.6:p.Ile331Val
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1129A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10794A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.907A>G
  hgvsp: ENSP00000380210.2:p.Ile303Val
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10794A>G
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile331Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

3-12458384-T-TCTACCCAAACAAAAGAAATCAGGATTCTTAGCCAGTCATAGGTAAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458384
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458431
    reference: chr 3
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: TCTACCCAAACAAAAGAAATCAGGATTCTTAGCCAGTCATAGGTAAAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsp: ENSP00000380207.2:p.Val307TyrfsTer10
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsp: ENSP00000380221.2:p.Val313TyrfsTer10
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsp: ENSP00000380210.2:p.Val307TyrfsTer10
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsp: ENSP00000380205.2:p.Val307TyrfsTer10
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsp: ENSP00000287820.6:p.Val335TyrfsTer10
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsp: ENSP00000312472.6:p.Val307TyrfsTer10
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val335TyrfsTer10
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

3-12458386-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458386
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458386
    reference: chr 3
allele count: 31
allele frequency: 2.555478616414416e-4
allele num: 121308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.919G>C
  hgvsp: ENSP00000312472.6:p.Val307Leu
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.919G>C
  hgvsp: ENSP00000380210.2:p.Val307Leu
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1003G>C
  hgvsp: ENSP00000287820.6:p.Val335Leu
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.937G>C
  hgvsp: ENSP00000380221.2:p.Val313Leu
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1141G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10806G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.919G>C
  hgvsp: ENSP00000380205.2:p.Val307Leu
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*501G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10806G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.919G>C
  hgvsp: ENSP00000380207.2:p.Val307Leu
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41662
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12902
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val335Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

3-12458388-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458388
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458388
    reference: chr 3
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.921A>T
  hgvsp: ENST00000397015.2:c.921A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*503A>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.939A>T
  hgvsp: ENST00000397026.2:c.939A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1005A>T
  hgvsp: ENST00000287820.6:c.1005A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10808A>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.921A>T
  hgvsp: ENST00000397010.2:c.921A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1143A>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.921A>T
  hgvsp: ENST00000309576.6:c.921A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.921A>T
  hgvsp: ENST00000397012.2:c.921A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10808A>T
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val335Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

3-12458394-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458394
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458394
    reference: chr 3
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1149T>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10814T>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.927T>G
  hgvsp: ENST00000397012.2:c.927T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.927T>G
  hgvsp: ENST00000397010.2:c.927T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10814T>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1011T>G
  hgvsp: ENST00000287820.6:c.1011T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*509T>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.945T>G
  hgvsp: ENST00000397026.2:c.945T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.927T>G
  hgvsp: ENST00000397015.2:c.927T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.927T>G
  hgvsp: ENST00000309576.6:c.927T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu337Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

3-12458400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458400
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458400
    reference: chr 3
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.933G>A
  hgvsp: ENST00000397015.2:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1017G>A
  hgvsp: ENST00000287820.6:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.933G>A
  hgvsp: ENST00000397012.2:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.933G>A
  hgvsp: ENST00000309576.6:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.951G>A
  hgvsp: ENST00000397026.2:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.933G>A
  hgvsp: ENST00000397010.2:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10820G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10820G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*515G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1155G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu339Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

3-12458403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458403
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458403
    reference: chr 3
allele count: 4
allele frequency: 3.297989875171083e-5
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*518C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10823C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.954C>T
  hgvsp: ENST00000397026.2:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1020C>T
  hgvsp: ENST00000287820.6:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.936C>T
  hgvsp: ENST00000397010.2:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.936C>T
  hgvsp: ENST00000309576.6:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.936C>T
  hgvsp: ENST00000397015.2:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1158C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.936C>T
  hgvsp: ENST00000397012.2:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10823C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12889
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Asn340Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

3-12458427-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458427
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458427
    reference: chr 3
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.960T>C
  hgvsp: ENST00000397012.2:c.960T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.960T>C
  hgvsp: ENST00000397010.2:c.960T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10847T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1044T>C
  hgvsp: ENST00000287820.6:c.1044T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.978T>C
  hgvsp: ENST00000397026.2:c.978T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.960T>C
  hgvsp: ENST00000397015.2:c.960T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*542T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10847T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.960T>C
  hgvsp: ENST00000309576.6:c.960T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1182T>C
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr348Tyr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

3-12458436-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458436
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458436
    reference: chr 3
allele count: 68
allele frequency: 5.611672278338945e-4
allele num: 121176
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1053C>T
  hgvsp: ENST00000287820.6:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.969C>T
  hgvsp: ENST00000397015.2:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.987C>T
  hgvsp: ENST00000397026.2:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1191C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10856C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10856C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.969C>T
  hgvsp: ENST00000397012.2:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.969C>T
  hgvsp: ENST00000397010.2:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.969C>T
  hgvsp: ENST00000309576.6:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*551C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12868
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51059
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His351His
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

3-12458437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458437
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458437
    reference: chr 3
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.970G>A
  hgvsp: ENSP00000380210.2:p.Glu324Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.970G>A
  hgvsp: ENSP00000312472.6:p.Glu324Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10857G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10857G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.970G>A
  hgvsp: ENSP00000380207.2:p.Glu324Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.970G>A
  hgvsp: ENSP00000380205.2:p.Glu324Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.988G>A
  hgvsp: ENSP00000380221.2:p.Glu330Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1192G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1054G>A
  hgvsp: ENSP00000287820.6:p.Glu352Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*552G>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51097
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu352Lys
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

3-12458452-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458452
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458452
    reference: chr 3
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1069A>G
  hgvsp: ENSP00000287820.6:p.Met357Val
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10872A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10872A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*567A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.985A>G
  hgvsp: ENSP00000380210.2:p.Met329Val
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1003A>G
  hgvsp: ENSP00000380221.2:p.Met335Val
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1207A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.985A>G
  hgvsp: ENSP00000312472.6:p.Met329Val
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.985A>G
  hgvsp: ENSP00000380207.2:p.Met329Val
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.985A>G
  hgvsp: ENSP00000380205.2:p.Met329Val
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50449
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met357Val
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-12458466-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458466
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458466
    reference: chr 3
allele count: 4
allele frequency: 3.307479865716317e-5
allele num: 120938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.999G>C
  hgvsp: ENSP00000380207.2:p.Leu333Phe
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.999G>C
  hgvsp: ENSP00000380205.2:p.Leu333Phe
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1083G>C
  hgvsp: ENSP00000287820.6:p.Leu361Phe
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.999G>C
  hgvsp: ENSP00000312472.6:p.Leu333Phe
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10886G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1017G>C
  hgvsp: ENSP00000380221.2:p.Leu339Phe
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*581G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.999G>C
  hgvsp: ENSP00000380210.2:p.Leu333Phe
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1221G>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10886G>C
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu361Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

3-12458471-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458471
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458471
    reference: chr 3
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10891A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1088A>G
  hgvsp: ENSP00000287820.6:p.Asn363Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10891A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.1004A>G
  hgvsp: ENSP00000380210.2:p.Asn335Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*586A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.1004A>G
  hgvsp: ENSP00000380207.2:p.Asn335Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1022A>G
  hgvsp: ENSP00000380221.2:p.Asn341Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.1004A>G
  hgvsp: ENSP00000312472.6:p.Asn335Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1226A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.1004A>G
  hgvsp: ENSP00000380205.2:p.Asn335Ser
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn363Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

3-12458484-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458484
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458484
    reference: chr 3
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*599T>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10904T>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1239T>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.1017T>G
  hgvsp: ENST00000397015.2:c.1017T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.1017T>G
  hgvsp: ENST00000397010.2:c.1017T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.1017T>G
  hgvsp: ENST00000397012.2:c.1017T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.1017T>G
  hgvsp: ENST00000309576.6:c.1017T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10904T>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1101T>G
  hgvsp: ENST00000287820.6:c.1101T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1035T>G
  hgvsp: ENST00000397026.2:c.1035T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val367Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-12458490-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458490
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458490
    reference: chr 3
allele count: 1
allele frequency: 8.275679433281473e-6
allele num: 120836
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1107A>G
  hgvsp: ENSP00000287820.6:p.Ile369Met
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10910A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.1023A>G
  hgvsp: ENSP00000380210.2:p.Ile341Met
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.1023A>G
  hgvsp: ENSP00000312472.6:p.Ile341Met
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1041A>G
  hgvsp: ENSP00000380221.2:p.Ile347Met
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.1023A>G
  hgvsp: ENSP00000380205.2:p.Ile341Met
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1245A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*605A>G
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.1023A>G
  hgvsp: ENSP00000380207.2:p.Ile341Met
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10910A>G
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile369Met
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

3-12458493-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458493
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458493
    reference: chr 3
allele count: 2
allele frequency: 1.655903295247558e-5
allele num: 120780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.1026C>T
  hgvsp: ENST00000397012.2:c.1026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1044C>T
  hgvsp: ENST00000397026.2:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.1026C>T
  hgvsp: ENST00000309576.6:c.1026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10913C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.1026C>T
  hgvsp: ENST00000397010.2:c.1026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10913C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1110C>T
  hgvsp: ENST00000287820.6:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.1026C>T
  hgvsp: ENST00000397015.2:c.1026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*608C>T
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1248C>T
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13326
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ser370Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

3-12458494-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458494
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458494
    reference: chr 3
allele count: 1
allele frequency: 8.27841981522567e-6
allele num: 120796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.1027G>A
  hgvsp: ENSP00000380210.2:p.Glu343Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.1027G>A
  hgvsp: ENSP00000312472.6:p.Glu343Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1249G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1045G>A
  hgvsp: ENSP00000380221.2:p.Glu349Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1111G>A
  hgvsp: ENSP00000287820.6:p.Glu371Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*609G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10914G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.1027G>A
  hgvsp: ENSP00000380207.2:p.Glu343Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10914G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.1027G>A
  hgvsp: ENSP00000380205.2:p.Glu343Lys
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu371Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-12458507-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458507
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458507
    reference: chr 3
allele count: 1
allele frequency: 8.279653579294243e-6
allele num: 120778
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.1040T>C
  hgvsp: ENSP00000380207.2:p.Phe347Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1058T>C
  hgvsp: ENSP00000380221.2:p.Phe353Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*622T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10927T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1124T>C
  hgvsp: ENSP00000287820.6:p.Phe375Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.1040T>C
  hgvsp: ENSP00000380210.2:p.Phe347Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.1040T>C
  hgvsp: ENSP00000380205.2:p.Phe347Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1262T>C
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.1040T>C
  hgvsp: ENSP00000312472.6:p.Phe347Ser
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10927T>C
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe375Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

3-12458516-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458516
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458516
    reference: chr 3
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10936G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10936G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1133G>A
  hgvsp: ENSP00000287820.6:p.Arg378Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.1049G>A
  hgvsp: ENSP00000380210.2:p.Arg350Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1271G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1067G>A
  hgvsp: ENSP00000380221.2:p.Arg356Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.1049G>A
  hgvsp: ENSP00000380207.2:p.Arg350Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.1049G>A
  hgvsp: ENSP00000380205.2:p.Arg350Lys
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*631G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.1049G>A
  hgvsp: ENSP00000312472.6:p.Arg350Lys
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg378Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-12458536-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458536
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458536
    reference: chr 3
allele count: 2
allele frequency: 1.658072325114821e-5
allele num: 120622
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1153C>A
  hgvsp: ENST00000287820.6:c.1153C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.1069C>A
  hgvsp: ENST00000309576.6:c.1069C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1291C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1087C>A
  hgvsp: ENST00000397026.2:c.1087C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.1069C>A
  hgvsp: ENST00000397012.2:c.1069C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10956C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.1069C>A
  hgvsp: ENST00000397015.2:c.1069C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*651C>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.1069C>A
  hgvsp: ENST00000397010.2:c.1069C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10956C>A
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49902
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg385Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

3-12458537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458537
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458537
    reference: chr 3
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.1070G>A
  hgvsp: ENSP00000380207.2:p.Arg357Gln
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1154G>A
  hgvsp: ENSP00000287820.6:p.Arg385Gln
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10957G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*652G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10957G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.1070G>A
  hgvsp: ENSP00000380210.2:p.Arg357Gln
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1088G>A
  hgvsp: ENSP00000380221.2:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1292G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.1070G>A
  hgvsp: ENSP00000312472.6:p.Arg357Gln
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.1070G>A
  hgvsp: ENSP00000380205.2:p.Arg357Gln
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg385Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

3-12458541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12458541
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 12458541
    reference: chr 3
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000312472
  ensembl transcript: ENST00000309576
  gene symbol: PPARG
  hgvsc: ENST00000309576.6:c.1074G>A
  hgvsp: ENST00000309576.6:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380195
  ensembl transcript: ENST00000396999
  gene symbol: PPARG
  hgvsc: ENST00000396999.2:c.*656G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380196
  ensembl transcript: ENST00000397000
  gene symbol: PPARG
  hgvsc: ENST00000397000.1:c.735+10961G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380221
  ensembl transcript: ENST00000397026
  gene symbol: PPARG
  hgvsc: ENST00000397026.2:c.1092G>A
  hgvsp: ENST00000397026.2:c.1092G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000438940
  ensembl transcript: ENST00000539812
  gene symbol: PPARG
  hgvsc: ENST00000539812.1:c.729+10961G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000287820
  ensembl transcript: ENST00000287820
  gene symbol: PPARG
  hgvsc: ENST00000287820.6:c.1158G>A
  hgvsp: ENST00000287820.6:c.1158G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380218
  ensembl transcript: ENST00000397023
  gene symbol: PPARG
  hgvsc: ENST00000397023.1:c.*1296G>A
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380207
  ensembl transcript: ENST00000397012
  gene symbol: PPARG
  hgvsc: ENST00000397012.2:c.1074G>A
  hgvsp: ENST00000397012.2:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380205
  ensembl transcript: ENST00000397010
  gene symbol: PPARG
  hgvsc: ENST00000397010.2:c.1074G>A
  hgvsp: ENST00000397010.2:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132170
  ensembl protein: ENSP00000380210
  ensembl transcript: ENST00000397015
  gene symbol: PPARG
  hgvsc: ENST00000397015.2:c.1074G>A
  hgvsp: ENST00000397015.2:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9236
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys386Lys
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

3-12458553-C-T
type: Variant
location: Region
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: T
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Asp390Asp
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 6795
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3399
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 922
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27670
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 18576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.207389222038878e-4
allele num: 49694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.2e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

FS
type: SiteQuality
SIO_000300: 1.514e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

DP
type: SiteQuality
SIO_000300: 1.149446e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

GenotypeDepth
all individuals: 80
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2460
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31693
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13601
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4834
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.472754050073638e-4
allele num: 6790
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.477e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.253e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
type: SiteQuality
SIO_000300: 1.97e1

FS
type: SiteQuality
SIO_000300: 5.563e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

DP
type: SiteQuality
SIO_000300: 1.03895e6

GenotypeDepth
all individuals: 281
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 735
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32920
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 1606
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11880
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.90458051614132e-4
allele num: 42004
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.644736842105263e-3
allele num: 608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.164502164502165e-4
allele num: 4620
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.215434083601286e-4
allele num: 6220
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.747252747252747e-4
allele num: 7280
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.492042440318302e-3
allele num: 12064
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.883948756593821e-4
allele num: 5308
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

FS
type: SiteQuality
SIO_000300: 1.267e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

DP
type: SiteQuality
SIO_000300: 9.897e5

GenotypeDepth
all individuals: 18207
bin: 1.25e1
variant carriers: 15

GenotypeQuality
all individuals: 697
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 204
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11454
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3258
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33231
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1829
bin: 9.75e1
variant carriers: 62

GenotypeQuality
all individuals: 711
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 5
allele frequency: 6.994963626189144e-4
allele num: 7148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.707317073170732e-4
allele num: 41000
num of homozygotes: 0

Latino
type: Population
allele count: 45
allele frequency: 7.492507492507493e-3
allele num: 6006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

DP
type: SiteQuality
SIO_000300: 9.75141e5

VQSLOD
type: SiteQuality
SIO_000300: 5.66e0

QD
type: SiteQuality
SIO_000300: 1.508e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeDepth
all individuals: 101
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11134
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3583
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33667
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 430
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7040
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.96232339089482e-4
allele num: 5096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11792
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.482e0

DP
type: SiteQuality
SIO_000300: 9.60972e5

QD
type: SiteQuality
SIO_000300: 9.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 101
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7877
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32254
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1240
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8490
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.247272054743851e-5
allele num: 10814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Finnish)
type: Population
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allele frequency: 0.0e0
allele num: 3938
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

MQRankSum
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SIO_000300: 1.33e-1

MQ
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VQSLOD
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InbreedingCoeff
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SIO_000300: -1.62e-2

ClippingRankSum
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SIO_000300: 4.89e-1

FS
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ReadPosRankSum
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SIO_000300: -5.78e-1

QD
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SIO_000300: 1.071e1

DP
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SIO_000300: 8.59292e5

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3750
num of homozygotes: 0

East Asian
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allele frequency: 2.617801047120419e-4
allele num: 3820
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 31456
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -3.62e-1

MQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -1.87e-2

VQSLOD
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FS
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DP
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SIO_000300: 8.43811e5

ClippingRankSum
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SIO_000300: 2.72e-1

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 9078
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 7.1745e5

VQSLOD
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ReadPosRankSum
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SIO_000300: -5.610000000000001e-1

BaseQRankSum
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -3.59e-2

QD
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SIO_000300: 1.149e1

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4394
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 3.546099290780142e-4
allele num: 2820
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 9.810654370646523e-5
allele num: 20386
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 7.05899e5

QD
type: SiteQuality
SIO_000300: 1.365e1

BaseQRankSum
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VQSLOD
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SIO_000300: 2.25e-1

InbreedingCoeff
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SIO_000300: -3.73e-2

FS
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SIO_000300: 3.649e0

MQRankSum
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SIO_000300: 4.74e-1

ClippingRankSum
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SIO_000300: -1.157e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18526
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4102
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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Other
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Latino
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allele frequency: 1.400560224089636e-3
allele num: 1428
num of homozygotes: 0

ReadPosRankSum
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 2384
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 1.247038284075321e-4
allele num: 16038
num of homozygotes: 0

South Asian
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ClippingRankSum
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VQSLOD
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QD
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MQ
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FS
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 3628
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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Other
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European (Non-Finnish)
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2202
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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African
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South Asian
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Latino
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FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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SIO_000300: -5.12e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2136
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

BaseQRankSum
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ClippingRankSum
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SIO_000300: -7.31e-1

DP
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SIO_000300: 5.83331e5

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -5.28e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8050
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13294
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2120
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -2.235e0

MQRankSum
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DP
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SIO_000300: 5.75847e5

InbreedingCoeff
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SIO_000300: -5.33e-2

BaseQRankSum
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SIO_000300: -1.537e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 31

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 263
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12944
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1062
num of homozygotes: 0

African
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allele count: 27
allele frequency: 8.506616257088847e-3
allele num: 3174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.62692e5

QD
type: SiteQuality
SIO_000300: 1.237e1

BaseQRankSum
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SIO_000300: -1.866e0

FS
type: SiteQuality
SIO_000300: 2.362e0

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.49e-2

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 922
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7808
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1960
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.98e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

DP
type: SiteQuality
SIO_000300: 5.34168e5

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.502e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

South Asian
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allele frequency: 7.808839606434484e-5
allele num: 12806
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -4.8e-3

BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4888
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.171175474401841e-5
allele num: 46058
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.907e1

ClippingRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.168821028888696e-5
allele num: 46108
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5640
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

VQSLOD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.076843198338526e-5
allele num: 48150
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5078
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

VQSLOD
type: SiteQuality
SIO_000300: -1.901e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.26e-1

DP
type: SiteQuality
SIO_000300: 1.039716e6

FS
type: SiteQuality
SIO_000300: 1.146e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

QD
type: SiteQuality
SIO_000300: 1.043e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5130
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.172077521293668e-5
allele num: 48606
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.055928e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 2.712e0

InbreedingCoeff
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SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

QD
type: SiteQuality
SIO_000300: 1.188e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5130
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.419647927314026e-4
allele num: 7044
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.055928e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.188e1

FS
type: SiteQuality
SIO_000300: 2.712e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 49650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5210
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.363140676117775e-4
allele num: 7336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.03e-1

QD
type: SiteQuality
SIO_000300: 1.65e1

FS
type: SiteQuality
SIO_000300: 4.191e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.084617e6

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13802
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.455192732629511e-4
allele num: 8146
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5496
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.178e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.05e-1

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

DP
type: SiteQuality
SIO_000300: 1.173893e6

QD
type: SiteQuality
SIO_000300: 6.6e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8928
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.780817038857428e-5
allele num: 56154
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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SIO_000300: 1.238019e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele num: 9052
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Other
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East Asian
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MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

DP
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VQSLOD
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QD
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 9.667440061871617e-5
allele num: 10344
num of homozygotes: 0

European (Finnish)
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East Asian
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Other
type: Population
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African
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allele frequency: 9.481668773704172e-4
allele num: 9492
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South Asian
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European (Non-Finnish)
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allele frequency: 3.22154569762572e-5
allele num: 62082
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QD
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MQRankSum
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BaseQRankSum
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FS
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MQ
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DP
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 1138
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513683700653911e-5
allele num: 66064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.874e0

QD
type: SiteQuality
SIO_000300: 9.74e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.897e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
SIO_000300: 1.455222e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

FS
type: SiteQuality
SIO_000300: 1.238e0

VQSLOD
type: SiteQuality
SIO_000300: -1.621e0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504936190705514e-5
allele num: 66448
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.622e1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.465891e6

MQ
type: SiteQuality
SIO_000300: 5.907e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.277e0

VQSLOD
type: SiteQuality
SIO_000300: -1.136e0

FS
type: SiteQuality
SIO_000300: 2.791e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 1114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.506e1

MQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.41e-1

DP
type: SiteQuality
SIO_000300: 1.46747e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.96e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

FS
type: SiteQuality
SIO_000300: 1.911e0

DP
type: SiteQuality
SIO_000300: 1.487047e6

GenotypeQuality
all individuals: 343
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 171
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GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 1094
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variant carriers: 2

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 2

GenotypeQuality
all individuals: 50742
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 653
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 9.75e1
variant carriers: 475

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 29
allele frequency: 2.518672919923571e-3
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

East Asian
type: Population
allele count: 459
allele frequency: 5.333488264001859e-2
allele num: 8606
num of homozygotes: 12

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.03030303030303e-4
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.96e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 1.487047e6

FS
type: SiteQuality
SIO_000300: 1.911e0

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50742
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 171
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1702
bin: 9.75e1
variant carriers: 8

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201453759048449e-4
allele num: 66586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

FS
type: SiteQuality
SIO_000300: 1.911e0

BaseQRankSum
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SIO_000300: -1.98e0

QD
type: SiteQuality
SIO_000300: 1.25e1

DP
type: SiteQuality
SIO_000300: 1.487047e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.96e-2

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1167
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.846153846153846e-4
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 5.81e-1

DP
type: SiteQuality
SIO_000300: 1.474461e6

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.449e1

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.714e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1165
bin: 7.25e1
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GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.261e0

DP
type: SiteQuality
SIO_000300: 1.474694e6

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.521e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQ
type: SiteQuality
SIO_000300: 5.775e1

VQSLOD
type: SiteQuality
SIO_000300: -1.801e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.72e-1

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 4223
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 14
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.323e-1

QD
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SIO_000300: 7.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

FS
type: SiteQuality
SIO_000300: 5.004e0

DP
type: SiteQuality
SIO_000300: 1.476717e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.52e-1

FS
type: SiteQuality
SIO_000300: 2.682e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.47e-1

InbreedingCoeff
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SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 3.291e1

BaseQRankSum
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SIO_000300: -1.763e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: -1.716e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

DP
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SIO_000300: 1.476591e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -1.084e0

InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

BaseQRankSum
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SIO_000300: 7.79e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

FS
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 1.476904e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

FS
type: SiteQuality
SIO_000300: 4.593e0

QD
type: SiteQuality
SIO_000300: 1.414e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.784e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-1

DP
type: SiteQuality
SIO_000300: 1.477043e6

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.477191e6

QD
type: SiteQuality
SIO_000300: 1.095e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
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SIO_000300: 8.27e-1

ReadPosRankSum
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SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 4.722e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
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SIO_000300: 1.07e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.831e0

DP
type: SiteQuality
SIO_000300: 1.477046e6

VQSLOD
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SIO_000300: 1.41e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.654e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.83e-1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -2.756e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731002250302925e-4
allele num: 11554
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Other
type: Population
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DP
type: SiteQuality
SIO_000300: 1.477101e6

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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MQRankSum
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SIO_000300: 5.19e-1

FS
type: SiteQuality
SIO_000300: 3.215e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.86e0

QD
type: SiteQuality
SIO_000300: 1.1e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1148
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.127e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.472e0

DP
type: SiteQuality
SIO_000300: 1.476917e6

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

VQSLOD
type: SiteQuality
SIO_000300: -4.395e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.503e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 24

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.07720270036351e-3
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.478142e6

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.47e0

QD
type: SiteQuality
SIO_000300: 1.192e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.34e1

DP
type: SiteQuality
SIO_000300: 1.477167e6

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.048e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.335e0

FS
type: SiteQuality
SIO_000300: 5.095e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.42e-1

FS
type: SiteQuality
SIO_000300: 8.2574e1

DP
type: SiteQuality
SIO_000300: 1.476778e6

MQ
type: SiteQuality
SIO_000300: 5.355e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

VQSLOD
type: SiteQuality
SIO_000300: -1.365e1

MQRankSum
type: SiteQuality
SIO_000300: -9.792e0

QD
type: SiteQuality
SIO_000300: 4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 31

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 2.787389465590157e-3
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.731002250302925e-4
allele num: 11554
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.329e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

FS
type: SiteQuality
SIO_000300: 1.114e0

DP
type: SiteQuality
SIO_000300: 1.47889e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.334e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.86e-1

MQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.611e1

ReadPosRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.43e0

BaseQRankSum
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SIO_000300: 7.42e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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QD
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

DP
type: SiteQuality
SIO_000300: 1.476197e6

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

FS
type: SiteQuality
SIO_000300: 2.3094e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.084e1

VQSLOD
type: SiteQuality
SIO_000300: -3.886e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.03e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
all individuals: 367
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4246
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51330
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.628558204119417e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.086e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.98e-1

QD
type: SiteQuality
SIO_000300: 9.460000000000001e0

FS
type: SiteQuality
SIO_000300: 9.409999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

DP
type: SiteQuality
SIO_000300: 1.476325e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51201
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.734e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

MQ
type: SiteQuality
SIO_000300: 5.611e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.47474e6

QD
type: SiteQuality
SIO_000300: 1.138e1

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4192
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
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variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 9.75e1
variant carriers: 68

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 64
allele frequency: 3.876908165737824e-3
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.502881844380403e-5
allele num: 66624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

FS
type: SiteQuality
SIO_000300: 1.168e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.225e1

DP
type: SiteQuality
SIO_000300: 1.477231e6

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4199
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.054e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.47e0

QD
type: SiteQuality
SIO_000300: 1.415e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.237e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

DP
type: SiteQuality
SIO_000300: 1.474018e6

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
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variant carriers: 0

GenotypeQuality
all individuals: 1147
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variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 367
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4185
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502448991856726e-5
allele num: 66558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

DP
type: SiteQuality
SIO_000300: 1.469865e6

FS
type: SiteQuality
SIO_000300: 4.935e0

VQSLOD
type: SiteQuality
SIO_000300: -5.175e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.599e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.473e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 615
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4101
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 385
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variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.014856696039217e-5
allele num: 66502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

FS
type: SiteQuality
SIO_000300: 1.2669e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

DP
type: SiteQuality
SIO_000300: 1.466666e6

VQSLOD
type: SiteQuality
SIO_000300: -1.502e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.86e-1

QD
type: SiteQuality
SIO_000300: 1.529e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 323
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49675
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
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GenotypeQuality
all individuals: 335
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GenotypeQuality
all individuals: 1066
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 370
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

FS
type: SiteQuality
SIO_000300: 3.492e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e0

QD
type: SiteQuality
SIO_000300: 1.567e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.466129e6

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
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variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1116
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GenotypeQuality
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GenotypeQuality
all individuals: 364
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 247
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
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variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
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GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

DP
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SIO_000300: 1.464801e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.543e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

DP
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SIO_000300: 1.465436e6

QD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: -7.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.32e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.52e0

MQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

DP
type: SiteQuality
SIO_000300: 1.466987e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.45e-1

QD
type: SiteQuality
SIO_000300: 2.369e1

VQSLOD
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SIO_000300: -1.406e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175917215428034e-4
allele num: 8504
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

FS
type: SiteQuality
SIO_000300: 8.122e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.591e1

DP
type: SiteQuality
SIO_000300: 1.467025e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.467642e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.339e1

FS
type: SiteQuality
SIO_000300: 7.527e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.299999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506477854775535e-5
allele num: 66380
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.469716e6

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.884e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.624e0

VQSLOD
type: SiteQuality
SIO_000300: -2.044e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507977199384745e-5
allele num: 66314
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 900
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East Asian
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InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.507749834147518e-5
allele num: 66324
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South Asian
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East Asian
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Latino
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allele frequency: 0.0e0
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African
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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MQ
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DP
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QD
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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SIO_000300: 1.61e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 668
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507749834147518e-5
allele num: 66324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.847e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

QD
type: SiteQuality
SIO_000300: 1.988e1

MQ
type: SiteQuality
SIO_000300: 5.906e1

DP
type: SiteQuality
SIO_000300: 1.47273e6