2-42836705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836705
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836705
    reference: chr 2
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.235C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.298C>T
  hgvsp: ENST00000409019.1:c.298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.130C>T
  hgvsp: ENST00000406652.1:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.298C>T
  hgvsp: ENST00000406911.1:c.298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.298C>T
  hgvsp: ENST00000454356.1:c.298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.298C>T
  hgvsp: ENST00000405094.1:c.298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.130C>T
  hgvsp: ENST00000405592.1:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.298C>T
  hgvsp: ENST00000407270.3:c.298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30365C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.270C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*146C>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu100Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-42836709-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836709
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836709
    reference: chr 2
allele count: 15
allele frequency: 1.242544731610338e-4
allele num: 120720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.274C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.302C>G
  hgvsp: ENSP00000385823.1:p.Pro101Arg
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.302C>G
  hgvsp: ENSP00000385241.1:p.Pro101Arg
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.302C>G
  hgvsp: ENSP00000386763.1:p.Pro101Arg
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.134C>G
  hgvsp: ENSP00000384249.1:p.Pro45Arg
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.302C>G
  hgvsp: ENSP00000385045.3:p.Pro101Arg
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*150C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.302C>G
  hgvsp: ENSP00000391455.1:p.Pro101Arg
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30369C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.134C>G
  hgvsp: ENSP00000383973.1:p.Pro45Arg
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.239C>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro101Arg
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

2-42836710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836710
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836710
    reference: chr 2
allele count: 2
allele frequency: 1.656781205474005e-5
allele num: 120716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.240C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.303C>T
  hgvsp: ENST00000407270.3:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30370C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.303C>T
  hgvsp: ENST00000409019.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.303C>T
  hgvsp: ENST00000405094.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*151C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.303C>T
  hgvsp: ENST00000454356.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.135C>T
  hgvsp: ENST00000405592.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.135C>T
  hgvsp: ENST00000406652.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.303C>T
  hgvsp: ENST00000406911.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.275C>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro101Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

2-42836713-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836713
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836713
    reference: chr 2
allele count: 20
allele frequency: 1.656973372437905e-4
allele num: 120702
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.306A>G
  hgvsp: ENST00000454356.1:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.138A>G
  hgvsp: ENST00000406652.1:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.243A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.306A>G
  hgvsp: ENST00000407270.3:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.306A>G
  hgvsp: ENST00000405094.1:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.306A>G
  hgvsp: ENST00000406911.1:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.306A>G
  hgvsp: ENST00000409019.1:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.138A>G
  hgvsp: ENST00000405592.1:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.278A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*154A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30373A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala102Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

2-42836732-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836732
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836732
    reference: chr 2
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.149+8C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.317+8C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.317+8C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.317+8C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.317+8C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.254+8C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.289+8C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.317+8C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*165+8C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30392C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.149+8C>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.317+8C>G
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

2-42836738-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836738
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836738
    reference: chr 2
allele count: 680
allele frequency: 5.640719357621607e-3
allele num: 120552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.317+14A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.317+14A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30398A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.254+14A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.317+14A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.149+14A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.289+14A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.149+14A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.317+14A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*165+14A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.317+14A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 23
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

2-42836751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836751
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836751
    reference: chr 2
allele count: 1
allele frequency: 8.303854649328218e-6
allele num: 120426
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.317+27C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.317+27C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.149+27C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.254+27C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.289+27C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.317+27C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.317+27C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.317+27C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.149+27C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*165+27C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30411C>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35751
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

2-42836757-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836757
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836757
    reference: chr 2
allele count: 1
allele frequency: 8.306199747491528e-6
allele num: 120392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.289+33A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.317+33A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.317+33A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.149+33A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.317+33A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.317+33A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.149+33A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.317+33A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.254+33A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*165+33A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30417A>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

2-42836760-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836760
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836760
    reference: chr 2
allele count: 3
allele frequency: 2.492770964203809e-5
allele num: 120348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.317+36A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.317+36A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.317+36A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.317+36A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.317+36A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.289+36A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.149+36A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*165+36A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.149+36A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.254+36A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30420A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

2-42836761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836761
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836761
    reference: chr 2
allele count: 6
allele frequency: 4.987862867023576e-5
allele num: 120292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.317+37C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.317+37C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.317+37C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.289+37C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.317+37C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.317+37C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30421C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.254+37C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*165+37C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.149+37C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.149+37C>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

2-42836765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836765
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836765
    reference: chr 2
allele count: 1
allele frequency: 8.313657676831499e-6
allele num: 120284
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.317+41G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.289+41G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.317+41G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.254+41G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.317+41G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.317+41G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.317+41G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30425G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.149+41G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.149+41G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*165+41G>A
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6392
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

2-42836766-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836766
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836766
    reference: chr 2
allele count: 1
allele frequency: 8.315593400745077e-6
allele num: 120256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.317+42A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.317+42A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.289+42A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.149+42A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.317+42A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*165+42A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.254+42A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30426A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.149+42A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.317+42A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.317+42A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-42836768-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836768
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836768
    reference: chr 2
allele count: 2
allele frequency: 1.665556295802798e-5
allele num: 120080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.317+44C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.317+44C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.289+44C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.149+44C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.317+44C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.149+44C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30428C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.317+44C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*165+44C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.317+44C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.254+44C>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

2-42836774-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42836774
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42836774
    reference: chr 2
allele count: 1
allele frequency: 8.32251406504877e-6
allele num: 120156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.278+30434A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.289+50A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.317+50A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.317+50A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*165+50A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.317+50A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.149+50A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.317+50A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.149+50A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.317+50A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.254+50A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-42867297-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867297
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867297
    reference: chr 2
allele count: 1
allele frequency: 1.809561724150411e-5
allele num: 55262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.521-16T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*166-16T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.150-16T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.318-16T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.150-16T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.318-16T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.318-16T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.318-16T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.318-16T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.255-16T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.279-16T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3970T>A
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29046
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8384
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

2-42867298-TTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867298
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867295
    reference: chr 2
allele count: 1
allele frequency: 1.796880615251923e-5
allele num: 55652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.150-12_150-10delCTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.521-12_521-10delCTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.255-12_255-10delCTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.150-12_150-10delCTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.318-12_318-10delCTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.318-12_318-10delCTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*166-12_*166-10delCTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.318-12_318-10delCTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.279-12_279-10delCTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.318-12_318-10delCTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.318-12_318-10delCTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3966_290-3964delCTT
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9305
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: TTTC
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

2-42867301-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867301
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867302
    reference: chr 2
allele count: 1
allele frequency: 1.757469244288225e-5
allele num: 56900
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.521-7dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.318-7dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*166-7dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.150-7dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.318-7dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.255-7dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.318-7dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3961dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.318-7dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.318-7dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.279-7dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.150-7dupT
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

2-42867302-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867302
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867302
    reference: chr 2
allele count: 1
allele frequency: 1.721703798078578e-5
allele num: 58082
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.150-11T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3965T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.318-11T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.318-11T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.318-11T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.318-11T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.318-11T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.521-11T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.150-11T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.279-11T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*166-11T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.255-11T>C
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-42867307-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867307
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867306
    reference: chr 2
allele count: 2
allele frequency: 3.173897863966738e-5
allele num: 63014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.255-4delA
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.150-4delA
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.318-4delA
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.318-4delA
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.318-4delA
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*166-4delA
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.318-4delA
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.150-4delA
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.521-4delA
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.279-4delA
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3958delA
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.318-4delA
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.318-4delA
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: CA
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

2-42867316-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867316
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867316
    reference: chr 2
allele count: 1
allele frequency: 1.360433161918755e-5
allele num: 73506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.321A>T
  hgvsp: ENST00000406911.1:c.321A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.153A>T
  hgvsp: ENST00000406652.1:c.153A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.321A>T
  hgvsp: ENST00000409019.1:c.321A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*169A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3951A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.258A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.321A>T
  hgvsp: ENST00000454356.1:c.321A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.153A>T
  hgvsp: ENST00000405592.1:c.153A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.321A>T
  hgvsp: ENST00000407270.3:c.321A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.321A>T
  hgvsp: ENST00000405094.1:c.321A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.524A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.282A>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly107Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff

2-42867324-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867324
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867324
    reference: chr 2
allele count: 3
allele frequency: 3.769601930036188e-5
allele num: 79584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.329G>A
  hgvsp: ENSP00000386763.1:p.Ser110Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.329G>A
  hgvsp: ENSP00000391455.1:p.Ser110Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3943G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.329G>A
  hgvsp: ENSP00000385045.3:p.Ser110Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.161G>A
  hgvsp: ENSP00000384249.1:p.Ser54Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.329G>A
  hgvsp: ENSP00000385241.1:p.Ser110Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.161G>A
  hgvsp: ENSP00000383973.1:p.Ser54Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.329G>A
  hgvsp: ENSP00000385823.1:p.Ser110Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.532G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.290G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.266G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*177G>A
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser110Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS

2-42867330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867330
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867330
    reference: chr 2
allele count: 3
allele frequency: 3.641572188099342e-5
allele num: 82382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.272C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.335C>T
  hgvsp: ENSP00000385823.1:p.Ala112Val
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.335C>T
  hgvsp: ENSP00000391455.1:p.Ala112Val
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.335C>T
  hgvsp: ENSP00000386763.1:p.Ala112Val
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.335C>T
  hgvsp: ENSP00000385045.3:p.Ala112Val
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.335C>T
  hgvsp: ENSP00000385241.1:p.Ala112Val
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.167C>T
  hgvsp: ENSP00000383973.1:p.Ala56Val
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.167C>T
  hgvsp: ENSP00000384249.1:p.Ala56Val
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3937C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.538C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*183C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.296C>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala112Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-42867331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867331
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867331
    reference: chr 2
allele count: 2
allele frequency: 2.409232177704966e-5
allele num: 83014
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.336C>T
  hgvsp: ENST00000407270.3:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3936C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.336C>T
  hgvsp: ENST00000406911.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.297C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*184C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.336C>T
  hgvsp: ENST00000405094.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.168C>T
  hgvsp: ENST00000406652.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.168C>T
  hgvsp: ENST00000405592.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.336C>T
  hgvsp: ENST00000454356.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.539C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.273C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.336C>T
  hgvsp: ENST00000409019.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala112Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

2-42867337-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867337
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867337
    reference: chr 2
allele count: 14
allele frequency: 1.652697438318971e-4
allele num: 84710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.342G>C
  hgvsp: ENST00000406911.1:c.342G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.545G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*190G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3930G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.342G>C
  hgvsp: ENST00000409019.1:c.342G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.303G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.342G>C
  hgvsp: ENST00000407270.3:c.342G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.174G>C
  hgvsp: ENST00000405592.1:c.174G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.279G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.342G>C
  hgvsp: ENST00000405094.1:c.342G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.342G>C
  hgvsp: ENST00000454356.1:c.342G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.174G>C
  hgvsp: ENST00000406652.1:c.174G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu114Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

2-42867353-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867353
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867353
    reference: chr 2
allele count: 1
allele frequency: 1.16918040453642e-5
allele num: 85530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.358G>A
  hgvsp: ENSP00000386763.1:p.Val120Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.358G>A
  hgvsp: ENSP00000385241.1:p.Val120Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.190G>A
  hgvsp: ENSP00000384249.1:p.Val64Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.358G>A
  hgvsp: ENSP00000391455.1:p.Val120Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.295G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.319G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*206G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.358G>A
  hgvsp: ENSP00000385823.1:p.Val120Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.190G>A
  hgvsp: ENSP00000383973.1:p.Val64Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3914G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.561G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.358G>A
  hgvsp: ENSP00000385045.3:p.Val120Ile
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val120Ile
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

2-42867361-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867361
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867361
    reference: chr 2
allele count: 7
allele frequency: 8.324414317992627e-5
allele num: 84090
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.327A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.366A>G
  hgvsp: ENST00000409019.1:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*214A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.303A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3906A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.198A>G
  hgvsp: ENST00000406652.1:c.198A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.198A>G
  hgvsp: ENST00000405592.1:c.198A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.366A>G
  hgvsp: ENST00000454356.1:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.366A>G
  hgvsp: ENST00000407270.3:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.366A>G
  hgvsp: ENST00000406911.1:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.366A>G
  hgvsp: ENST00000405094.1:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.569A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21903
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6685
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser122Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

2-42867368-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867368
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867368
    reference: chr 2
allele count: 1
allele frequency: 1.218323586744639e-5
allele num: 82080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.205G>T
  hgvsp: ENSP00000383973.1:p.Asp69Tyr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*221G>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.310G>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.334G>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.373G>T
  hgvsp: ENSP00000385241.1:p.Asp125Tyr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.205G>T
  hgvsp: ENSP00000384249.1:p.Asp69Tyr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.373G>T
  hgvsp: ENSP00000386763.1:p.Asp125Tyr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.576G>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3899G>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.373G>T
  hgvsp: ENSP00000385823.1:p.Asp125Tyr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.373G>T
  hgvsp: ENSP00000391455.1:p.Asp125Tyr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.373G>T
  hgvsp: ENSP00000385045.3:p.Asp125Tyr
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18323
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp125Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

2-42867387-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867387
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867387
    reference: chr 2
allele count: 1
allele frequency: 1.339369424874769e-5
allele num: 74662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.213+11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.318+11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.584+11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*229+11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.381+11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.213+11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3880A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.381+11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.381+11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.381+11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.381+11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.342+11A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9087
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

2-42867392-AGTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867392
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867389
    reference: chr 2
allele count: 1
allele frequency: 1.370764338194978e-5
allele num: 72952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.318+20_318+22delGTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3871_290-3869delGTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.381+20_381+22delGTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.381+20_381+22delGTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.342+20_342+22delGTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.584+20_584+22delGTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.213+20_213+22delGTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.381+20_381+22delGTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.213+20_213+22delGTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.381+20_381+22delGTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.381+20_381+22delGTT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*229+20_*229+22delGTT
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: AGTT
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS

2-42867395-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867395
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867395
    reference: chr 2
allele count: 1
allele frequency: 1.400207230670139e-5
allele num: 71418
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.318+19T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.584+19T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.381+19T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*229+19T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.213+19T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.381+19T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.381+19T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.381+19T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.213+19T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3872T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.381+19T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.342+19T>C
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17255
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

2-42867408-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867408
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867408
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 64174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*229+32T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.381+32T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.381+32T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.381+32T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3859T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.318+32T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.213+32T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.584+32T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.381+32T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.342+32T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.381+32T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.213+32T>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21031
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/2-42867422-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867422
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867422
    reference: chr 2
allele count: 57
allele frequency: 1.006178287731686e-3
allele num: 56650
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.584+46A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.381+46A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.381+46A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.342+46A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.318+46A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.213+46A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.381+46A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.381+46A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.213+46A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3845A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.381+46A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*229+46A>C
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12737
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7149
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24072
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-42867424-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42867424
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42867424
    reference: chr 2
allele count: 3
allele frequency: 5.350073117665941e-5
allele num: 56074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.381+48A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.584+48A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.318+48A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-3843A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.381+48A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.213+48A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*229+48A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.381+48A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.381+48A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.381+48A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.213+48A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.342+48A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12586
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24213
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

2-42871222-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871222
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871222
    reference: chr 2
allele count: 1
allele frequency: 1.133966842809516e-5
allele num: 88186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.382-45G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*230-45G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.382-45G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.382-45G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.382-45G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.319-45G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.382-45G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.343-45G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.214-45G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-45G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.214-45G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.585-45G>A
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20351
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-42871229-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871229
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871229
    reference: chr 2
allele count: 1
allele frequency: 1.12082492714638e-5
allele num: 89220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.382-38G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.382-38G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.214-38G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*230-38G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.585-38G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.214-38G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.382-38G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.382-38G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-38G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.343-38G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.319-38G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.382-38G>C
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19154
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

2-42871249-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871249
    reference: chr 2
allele count: 2
allele frequency: 2.001441037547034e-5
allele num: 99928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.382-18T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.319-18T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.382-18T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-18T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.585-18T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.214-18T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.214-18T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*230-18T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.343-18T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.382-18T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.382-18T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.382-18T>A
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-42871249-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871249
    reference: chr 2
allele count: 1
allele frequency: 1.000720518773517e-5
allele num: 99928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.382-18T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.319-18T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.382-18T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.382-18T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-18T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.214-18T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.382-18T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.214-18T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.343-18T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.382-18T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.585-18T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*230-18T>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-42871251-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871251
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871251
    reference: chr 2
allele count: 1
allele frequency: 9.844651400893894e-6
allele num: 101578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.382-16T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.382-16T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.585-16T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-16T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.214-16T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.382-16T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.214-16T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.343-16T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*230-16T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.382-16T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.319-16T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.382-16T>C
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

2-42871256-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871256
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871256
    reference: chr 2
allele count: 1
allele frequency: 9.338637679535309e-6
allele num: 107082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.343-11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.214-11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.382-11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*230-11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.214-11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.382-11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.585-11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.382-11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.382-11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.319-11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.382-11A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.290-11A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36451
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/2-42871271-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871271
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871271
    reference: chr 2
allele count: 2
allele frequency: 1.71556013038257e-5
allele num: 116580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.386C>A
  hgvsp: ENSP00000385823.1:p.Thr129Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.294C>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.323C>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.386C>A
  hgvsp: ENSP00000385241.1:p.Thr129Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.386C>A
  hgvsp: ENSP00000385045.3:p.Thr129Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.218C>A
  hgvsp: ENSP00000383973.1:p.Thr73Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.386C>A
  hgvsp: ENSP00000386763.1:p.Thr129Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*234C>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.218C>A
  hgvsp: ENSP00000384249.1:p.Thr73Asn
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.347C>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.589C>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.386C>A
  hgvsp: ENSP00000391455.1:p.Thr129Asn
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8049
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42378
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr129Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

2-42871272-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871272
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871272
    reference: chr 2
allele count: 4
allele frequency: 3.419797206025683e-5
allele num: 116966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.348C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.295C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*235C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.387C>T
  hgvsp: ENST00000409019.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.324C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.219C>T
  hgvsp: ENST00000406652.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.387C>T
  hgvsp: ENST00000454356.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.387C>T
  hgvsp: ENST00000405094.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.590C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.387C>T
  hgvsp: ENST00000406911.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.219C>T
  hgvsp: ENST00000405592.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.387C>T
  hgvsp: ENST00000407270.3:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr129Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-42871272-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871272
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871272
    reference: chr 2
allele count: 1
allele frequency: 8.549493015064207e-6
allele num: 116966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.295C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.387C>G
  hgvsp: ENST00000406911.1:c.387C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.348C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.387C>G
  hgvsp: ENST00000405094.1:c.387C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.219C>G
  hgvsp: ENST00000405592.1:c.219C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.387C>G
  hgvsp: ENST00000409019.1:c.387C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.219C>G
  hgvsp: ENST00000406652.1:c.219C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.590C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.324C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.387C>G
  hgvsp: ENST00000454356.1:c.387C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.387C>G
  hgvsp: ENST00000407270.3:c.387C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*235C>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr129Thr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

2-42871276-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871276
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871276
    reference: chr 2
allele count: 1
allele frequency: 8.465536799688468e-6
allele num: 118126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.391T>C
  hgvsp: ENSP00000386763.1:p.Phe131Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.391T>C
  hgvsp: ENSP00000385241.1:p.Phe131Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.299T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.223T>C
  hgvsp: ENSP00000384249.1:p.Phe75Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*239T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.391T>C
  hgvsp: ENSP00000385045.3:p.Phe131Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.391T>C
  hgvsp: ENSP00000385823.1:p.Phe131Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.328T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.223T>C
  hgvsp: ENSP00000383973.1:p.Phe75Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.391T>C
  hgvsp: ENSP00000391455.1:p.Phe131Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.594T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.352T>C
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe131Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

2-42871283-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871283
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871283
    reference: chr 2
allele count: 1
allele frequency: 8.385884878572387e-6
allele num: 119248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*246C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.398C>T
  hgvsp: ENSP00000385045.3:p.Ser133Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.359C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.306C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.398C>T
  hgvsp: ENSP00000391455.1:p.Ser133Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.398C>T
  hgvsp: ENSP00000386763.1:p.Ser133Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.335C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.230C>T
  hgvsp: ENSP00000383973.1:p.Ser77Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.398C>T
  hgvsp: ENSP00000385823.1:p.Ser133Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.398C>T
  hgvsp: ENSP00000385241.1:p.Ser133Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.230C>T
  hgvsp: ENSP00000384249.1:p.Ser77Leu
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.601C>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser133Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-42871284-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871284
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871284
    reference: chr 2
allele count: 1
allele frequency: 8.376752835530836e-6
allele num: 119378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.399A>C
  hgvsp: ENST00000406911.1:c.399A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.399A>C
  hgvsp: ENST00000405094.1:c.399A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.307A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.360A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*247A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.399A>C
  hgvsp: ENST00000454356.1:c.399A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.399A>C
  hgvsp: ENST00000409019.1:c.399A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.602A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.231A>C
  hgvsp: ENST00000406652.1:c.231A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.231A>C
  hgvsp: ENST00000405592.1:c.231A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.336A>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.399A>C
  hgvsp: ENST00000407270.3:c.399A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser133Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

2-42871287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871287
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871287
    reference: chr 2
allele count: 1
allele frequency: 8.361763328650746e-6
allele num: 119592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.605G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.402G>A
  hgvsp: ENST00000409019.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.234G>A
  hgvsp: ENST00000406652.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.234G>A
  hgvsp: ENST00000405592.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.402G>A
  hgvsp: ENST00000454356.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.363G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.402G>A
  hgvsp: ENST00000405094.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.402G>A
  hgvsp: ENST00000406911.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.339G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*250G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.310G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.402G>A
  hgvsp: ENST00000407270.3:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu134Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-42871292-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871292
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871292
    reference: chr 2
allele count: 1
allele frequency: 8.342927700188551e-6
allele num: 119862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.368A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*255A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.315A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.610A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.239A>G
  hgvsp: ENSP00000383973.1:p.Tyr80Cys
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.407A>G
  hgvsp: ENSP00000385045.3:p.Tyr136Cys
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.407A>G
  hgvsp: ENSP00000386763.1:p.Tyr136Cys
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.239A>G
  hgvsp: ENSP00000384249.1:p.Tyr80Cys
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.407A>G
  hgvsp: ENSP00000385241.1:p.Tyr136Cys
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.407A>G
  hgvsp: ENSP00000391455.1:p.Tyr136Cys
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.407A>G
  hgvsp: ENSP00000385823.1:p.Tyr136Cys
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.344A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr136Cys
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

2-42871293-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871293
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871293
    reference: chr 2
allele count: 33
allele frequency: 2.751972246776857e-4
allele num: 119914
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.369T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*256T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.408T>C
  hgvsp: ENST00000405094.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.345T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.408T>C
  hgvsp: ENST00000407270.3:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.408T>C
  hgvsp: ENST00000454356.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.240T>C
  hgvsp: ENST00000405592.1:c.240T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.408T>C
  hgvsp: ENST00000406911.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.611T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.240T>C
  hgvsp: ENST00000406652.1:c.240T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.408T>C
  hgvsp: ENST00000409019.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.316T>C
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43717
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr136Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

2-42871303-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871303
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871303
    reference: chr 2
allele count: 2
allele frequency: 1.663699735471742e-5
allele num: 120214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.418T>C
  hgvsp: ENST00000409019.1:c.418T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.355T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.379T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*266T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.418T>C
  hgvsp: ENST00000407270.3:c.418T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.326T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.621T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.250T>C
  hgvsp: ENST00000406652.1:c.250T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.418T>C
  hgvsp: ENST00000405094.1:c.418T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.250T>C
  hgvsp: ENST00000405592.1:c.250T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.418T>C
  hgvsp: ENST00000454356.1:c.418T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.418T>C
  hgvsp: ENST00000406911.1:c.418T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43712
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu140Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-42871312-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871312
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871312
    reference: chr 2
allele count: 1
allele frequency: 8.309650828472188e-6
allele num: 120342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.335C>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.427C>A
  hgvsp: ENSP00000391455.1:p.Leu143Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.630C>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.427C>A
  hgvsp: ENSP00000385823.1:p.Leu143Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.364C>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.427C>A
  hgvsp: ENSP00000386763.1:p.Leu143Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.388C>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*275C>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.427C>A
  hgvsp: ENSP00000385045.3:p.Leu143Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.259C>A
  hgvsp: ENSP00000383973.1:p.Leu87Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.427C>A
  hgvsp: ENSP00000385241.1:p.Leu143Ile
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.259C>A
  hgvsp: ENSP00000384249.1:p.Leu87Ile
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu143Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-42871312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871312
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871312
    reference: chr 2
allele count: 1
allele frequency: 8.309650828472188e-6
allele num: 120342
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.427C>T
  hgvsp: ENST00000407270.3:c.427C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.259C>T
  hgvsp: ENST00000406652.1:c.259C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.427C>T
  hgvsp: ENST00000406911.1:c.427C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.427C>T
  hgvsp: ENST00000405094.1:c.427C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.427C>T
  hgvsp: ENST00000454356.1:c.427C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.364C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.427C>T
  hgvsp: ENST00000409019.1:c.427C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.388C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.259C>T
  hgvsp: ENST00000405592.1:c.259C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.335C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*275C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.630C>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu143Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

2-42871314-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871314
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871314
    reference: chr 2
allele count: 5
allele frequency: 4.154549231408392e-5
allele num: 120350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.429A>G
  hgvsp: ENST00000406911.1:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*277A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.390A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.429A>G
  hgvsp: ENST00000454356.1:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.429A>G
  hgvsp: ENST00000405094.1:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.429A>G
  hgvsp: ENST00000409019.1:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.632A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.429A>G
  hgvsp: ENST00000407270.3:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.366A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.261A>G
  hgvsp: ENST00000405592.1:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.261A>G
  hgvsp: ENST00000406652.1:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.337A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu143Leu
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

2-42871349-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871349
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871349
    reference: chr 2
allele count: 1
allele frequency: 8.319605983460623e-6
allele num: 120198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.464G>C
  hgvsp: ENSP00000385241.1:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.464G>C
  hgvsp: ENSP00000385045.3:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.464G>C
  hgvsp: ENSP00000385823.1:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.296G>C
  hgvsp: ENSP00000383973.1:p.Arg99Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.464G>C
  hgvsp: ENSP00000386763.1:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.296G>C
  hgvsp: ENSP00000384249.1:p.Arg99Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.372G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.464G>C
  hgvsp: ENSP00000391455.1:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.401G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*312G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.425G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.667G>C
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg155Thr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

2-42871366-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871366
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871366
    reference: chr 2
allele count: 1
allele frequency: 8.366660531115611e-6
allele num: 119522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.442C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.481C>G
  hgvsp: ENSP00000385823.1:p.Pro161Ala
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.481C>G
  hgvsp: ENSP00000385241.1:p.Pro161Ala
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.684C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.313C>G
  hgvsp: ENSP00000383973.1:p.Pro105Ala
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.481C>G
  hgvsp: ENSP00000385045.3:p.Pro161Ala
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.389C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.313C>G
  hgvsp: ENSP00000384249.1:p.Pro105Ala
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.481C>G
  hgvsp: ENSP00000386763.1:p.Pro161Ala
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.481C>G
  hgvsp: ENSP00000391455.1:p.Pro161Ala
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*329C>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.418C>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro161Ala
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

2-42871366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871366
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871366
    reference: chr 2
allele count: 1
allele frequency: 8.366660531115611e-6
allele num: 119522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.418C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.389C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.481C>T
  hgvsp: ENSP00000386763.1:p.Pro161Ser
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.442C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.481C>T
  hgvsp: ENSP00000385241.1:p.Pro161Ser
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.313C>T
  hgvsp: ENSP00000384249.1:p.Pro105Ser
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*329C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.481C>T
  hgvsp: ENSP00000385823.1:p.Pro161Ser
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.481C>T
  hgvsp: ENSP00000391455.1:p.Pro161Ser
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.684C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.313C>T
  hgvsp: ENSP00000383973.1:p.Pro105Ser
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.481C>T
  hgvsp: ENSP00000385045.3:p.Pro161Ser
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro161Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

2-42871373-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871373
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871373
    reference: chr 2
allele count: 7
allele frequency: 5.903088158405154e-5
allele num: 118582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.488T>C
  hgvsp: ENSP00000385823.1:p.Met163Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.691T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.449T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.488T>C
  hgvsp: ENSP00000385045.3:p.Met163Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.488T>C
  hgvsp: ENSP00000386763.1:p.Met163Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.320T>C
  hgvsp: ENSP00000384249.1:p.Met107Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.488T>C
  hgvsp: ENSP00000385241.1:p.Met163Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.488T>C
  hgvsp: ENSP00000391455.1:p.Met163Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*336T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.396T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.320T>C
  hgvsp: ENSP00000383973.1:p.Met107Thr
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.425T>C
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40843
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met163Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

2-42871376-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871376
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871376
    reference: chr 2
allele count: 1
allele frequency: 8.477162524159914e-6
allele num: 117964
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.491T>A
  hgvsp: ENSP00000385045.3:p.Leu164Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.428T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.694T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.399T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.491T>A
  hgvsp: ENSP00000386763.1:p.Leu164Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.491T>A
  hgvsp: ENSP00000385241.1:p.Leu164Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.491T>A
  hgvsp: ENSP00000385823.1:p.Leu164Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.323T>A
  hgvsp: ENSP00000384249.1:p.Leu108Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.452T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*339T>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.323T>A
  hgvsp: ENSP00000383973.1:p.Leu108Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.491T>A
  hgvsp: ENSP00000391455.1:p.Leu164Gln
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39846
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu164Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

2-42871381-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871381
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871381
    reference: chr 2
allele count: 1
allele frequency: 8.547008547008548e-6
allele num: 117000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.496G>C
  hgvsp: ENSP00000391455.1:p.Glu166Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.328G>C
  hgvsp: ENSP00000383973.1:p.Glu110Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.496G>C
  hgvsp: ENSP00000386763.1:p.Glu166Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*344G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.328G>C
  hgvsp: ENSP00000384249.1:p.Glu110Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.496G>C
  hgvsp: ENSP00000385241.1:p.Glu166Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.496G>C
  hgvsp: ENSP00000385823.1:p.Glu166Gln
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.457G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.433G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.404G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000491314
  gene symbol: MTA3
  hgvsc: ENST00000491314.1:n.699G>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.496G>C
  hgvsp: ENSP00000385045.3:p.Glu166Gln
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu166Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

2-42871387-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871387
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871387
    reference: chr 2
allele count: 1
allele frequency: 8.711104916547614e-6
allele num: 114796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.436+3A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.499+3A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*347+3A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.499+3A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.499+3A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.331+3A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.460+3A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.499+3A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.331+3A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.407+3A>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.499+3A>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.499+3A>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

2-42871388-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871388
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871388
    reference: chr 2
allele count: 1
allele frequency: 8.868550346760318e-6
allele num: 112758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.460+4C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.499+4C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.407+4C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.499+4C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.331+4C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.499+4C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.499+4C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.499+4C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.331+4C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.436+4C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*347+4C>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.499+4C>T
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

2-42871397-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871397
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871397
    reference: chr 2
allele count: 1
allele frequency: 9.096366911055724e-6
allele num: 109934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.499+13G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.407+13G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.499+13G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.499+13G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.331+13G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.436+13G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.331+13G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.460+13G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.499+13G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.499+13G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*347+13G>A
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25693
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

2-42871398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871398
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871398
    reference: chr 2
allele count: 73
allele frequency: 6.688901920539511e-4
allele num: 109136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*347+14C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.499+14C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.499+14C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.499+14C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.407+14C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.499+14C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.331+14C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.331+14C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.499+14C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.436+14C>T
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.460+14C>T
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13654
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24273
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7305
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

2-42871399-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871399
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871399
    reference: chr 2
allele count: 4
allele frequency: 3.687995574405311e-5
allele num: 108460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.499+15G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.499+15G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.331+15G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.331+15G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.499+15G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.460+15G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*347+15G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.499+15G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.407+15G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.499+15G>A
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.436+15G>A
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22495
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15186
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

2-42871399-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871399
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871400
    reference: chr 2
allele count: 1
allele frequency: 9.219988936013278e-6
allele num: 108460
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.460+16dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.407+16dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.499+16dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.331+16dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*347+16dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.331+16dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.436+16dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.499+16dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.499+16dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.499+16dupT
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.499+16dupT
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

2-42871404-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871404
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871404
    reference: chr 2
allele count: 13
allele frequency: 1.223161024444403e-4
allele num: 106282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.331+20T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.436+20T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.331+20T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.499+20T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*347+20T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.499+20T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.460+20T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.499+20T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.499+20T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.407+20T>C
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.499+20T>C
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20342
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16161
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

2-42871404-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871404
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871404
    reference: chr 2
allele count: 2
allele frequency: 1.881786191452927e-5
allele num: 106282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.499+20T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.407+20T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.460+20T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.331+20T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.436+20T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.499+20T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.331+20T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.499+20T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.499+20T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*347+20T>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.499+20T>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

2-42871407-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42871407
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 42871407
    reference: chr 2
allele count: 2
allele frequency: 1.893903524554459e-5
allele num: 105602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000383973
  ensembl transcript: ENST00000405592
  gene symbol: MTA3
  hgvsc: ENST00000405592.1:c.331+23A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000484780
  gene symbol: MTA3
  hgvsc: ENST00000484780.1:n.460+23A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385823
  ensembl transcript: ENST00000405094
  gene symbol: MTA3
  hgvsc: ENST00000405094.1:c.499+23A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000401815
  ensembl transcript: ENST00000430763
  gene symbol: MTA3
  hgvsc: ENST00000430763.1:c.*347+23A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000493983
  gene symbol: MTA3
  hgvsc: ENST00000493983.1:n.407+23A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000384249
  ensembl transcript: ENST00000406652
  gene symbol: MTA3
  hgvsc: ENST00000406652.1:c.331+23A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000386763
  ensembl transcript: ENST00000409019
  gene symbol: MTA3
  hgvsc: ENST00000409019.1:c.499+23A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl transcript: ENST00000461256
  gene symbol: MTA3
  hgvsc: ENST00000461256.1:n.436+23A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385045
  ensembl transcript: ENST00000407270
  gene symbol: MTA3
  hgvsc: ENST00000407270.3:c.499+23A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000385241
  ensembl transcript: ENST00000406911
  gene symbol: MTA3
  hgvsc: ENST00000406911.1:c.499+23A>G
  variant of: http://identifiers.org/hgnc/23784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000057935
  ensembl protein: ENSP00000391455
  ensembl transcript: ENST00000454356
  gene symbol: MTA3
  hgvsc: ENST00000454356.1:c.499+23A>G
  variant of: http://identifiers.org/hgnc/23784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

GenotypeDepth
all individuals: 302
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5434
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6760
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.78e-1

QD
type: SiteQuality
SIO_000300: 1.022e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.836e0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 1.660583e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeDepth
all individuals: 412
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5449
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2447
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6759
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.248875562218891e-4
allele num: 66700
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

QD
type: SiteQuality
SIO_000300: 1.081e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 1.661917e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

GenotypeDepth
all individuals: 284
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38017
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5447
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1001
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99868058054456e-5
allele num: 66696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

MQRankSum
type: SiteQuality
SIO_000300: 7.23e-1

FS
type: SiteQuality
SIO_000300: 1.867e0

VQSLOD
type: SiteQuality
SIO_000300: -8.855e-1

DP
type: SiteQuality
SIO_000300: 1.661388e6

MQ
type: SiteQuality
SIO_000300: 5.887e1

QD
type: SiteQuality
SIO_000300: 9.35e0

GenotypeDepth
all individuals: 769
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6752
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5465
bin: 9.75e1
variant carriers: 20

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.211827435773146e-3
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.227e1

FS
type: SiteQuality
SIO_000300: 1.855e0

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

BaseQRankSum
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SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.661802e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
all individuals: 1098
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 37689
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
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VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 4.95e-1

BaseQRankSum
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SIO_000300: -1.665e0

QD
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MQ
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SIO_000300: 5.986e1

MQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

DP
type: SiteQuality
SIO_000300: 1.658338e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 657

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2409
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variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 588
allele frequency: 5.079474775397374e-2
allele num: 11576
num of homozygotes: 23

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

African
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allele count: 6
allele frequency: 6.122448979591836e-4
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.474272930648769e-3
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 60
allele frequency: 9.00846795988229e-4
allele num: 66604
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.094890510948905e-3
allele num: 16440
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

BaseQRankSum
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SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.02e-2

QD
type: SiteQuality
SIO_000300: 1.472e1

DP
type: SiteQuality
SIO_000300: 1.698486e6

GenotypeQuality
all individuals: 1113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 6551
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variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.665163e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

QD
type: SiteQuality
SIO_000300: 1.011e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.354e0

GenotypeQuality
all individuals: 339
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variant carriers: 0

GenotypeQuality
all individuals: 601
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 1005
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110228522546743e-5
allele num: 16366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.677e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: -9.286e-1

FS
type: SiteQuality
SIO_000300: 6.175e0

DP
type: SiteQuality
SIO_000300: 1.65788e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503714174009804e-5
allele num: 66502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.114711997064938e-5
allele num: 16354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

FS
type: SiteQuality
SIO_000300: 3.209e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.0e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.461e1

DP
type: SiteQuality
SIO_000300: 1.654853e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.024999247916729e-5
allele num: 66482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQRankSum
type: SiteQuality
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FS
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 273
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GenotypeQuality
all individuals: 562
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503985561738607e-5
allele num: 66490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.935e0

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.879e1

ClippingRankSum
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ReadPosRankSum
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QD
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VQSLOD
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 6.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.288999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.651348e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.459e0

QD
type: SiteQuality
SIO_000300: 1.343e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.321801718133271e-4
allele num: 8614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.017e0

MQRankSum
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SIO_000300: 1.27e0

ClippingRankSum
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SIO_000300: 3.83e-1

QD
type: SiteQuality
SIO_000300: 1.654e1

InbreedingCoeff
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SIO_000300: 9.7e-3

FS
type: SiteQuality
SIO_000300: 4.689e0

BaseQRankSum
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SIO_000300: -2.346e0

VQSLOD
type: SiteQuality
SIO_000300: -8.958e-1

DP
type: SiteQuality
SIO_000300: 1.651761e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

InbreedingCoeff
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SIO_000300: 1.19e-2

FS
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SIO_000300: 3.245e0

QD
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SIO_000300: 1.513e1

VQSLOD
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SIO_000300: 4.24e-1

DP
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SIO_000300: 1.652287e6

BaseQRankSum
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SIO_000300: 4.8e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.779e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.542832849146177e-5
allele num: 28226
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.22e0

DP
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SIO_000300: 1.110189e6

ReadPosRankSum
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SIO_000300: 1.85e0

FS
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SIO_000300: 3.424e0

InbreedingCoeff
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SIO_000300: -8.1e-3

BaseQRankSum
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SIO_000300: 2.03e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

QD
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SIO_000300: 1.823e1

MQ
type: SiteQuality
SIO_000300: 5.805e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.109e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.514197357323587e-5
allele num: 28456
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.116853e6

InbreedingCoeff
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SIO_000300: -7.8e-3

BaseQRankSum
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MQ
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -2.0e-1

VQSLOD
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SIO_000300: 1.06e0

MQRankSum
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SIO_000300: -2.137e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29160
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 1.69548999660902e-4
allele num: 5898
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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DP
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QD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 9.924573243350536e-5
allele num: 10076
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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East Asian
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European (Non-Finnish)
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num of homozygotes: 0

FS
type: SiteQuality
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32700
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.06e0

DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.036e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
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SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.31e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1105
bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.573340195573855e-5
allele num: 38860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

FS
type: SiteQuality
SIO_000300: 9.06e-1

BaseQRankSum
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SIO_000300: -1.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

ReadPosRankSum
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SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.296555e6

QD
type: SiteQuality
SIO_000300: 1.091e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 501
bin: 5.75e1
variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.729505361466621e-4
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.660577881102624e-4
allele num: 6022
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

DP
type: SiteQuality
SIO_000300: 1.34759e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.066e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.536e0

GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 600
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GenotypeQuality
all individuals: 305
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.527140205532165e-5
allele num: 44178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.313025210084034e-4
allele num: 7616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.371956e6

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.59e0

InbreedingCoeff
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SIO_000300: -2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 604
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6676
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.537988311288834e-4
allele num: 6502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.243762340692874e-5
allele num: 44568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.204e-1

DP
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SIO_000300: 1.376137e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

BaseQRankSum
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SIO_000300: 1.86e-1

MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: -1.061e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.412809826716385e-4
allele num: 45590
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.519756838905775e-3
allele num: 658
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6776
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5244
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7780
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.983293556085919e-4
allele num: 6704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-1

QD
type: SiteQuality
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.388429e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.21e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.166941145878478e-5
allele num: 46148
num of homozygotes: 0

East Asian
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Other
type: Population
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South Asian
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MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQ
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FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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allele num: 7696
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 8.365400702693659e-5
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Latino
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 2.262750599628909e-5
allele num: 44194
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South Asian
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African
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European (Finnish)
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Latino
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Other
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East Asian
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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East Asian
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European (Non-Finnish)
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South Asian
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African
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Other
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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South Asian
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Latino
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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QD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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African
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South Asian
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Latino
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Other
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East Asian
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MQ
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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MQ
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FS
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QD
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 1.048364551299972e-4
allele num: 28616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 2.16e0

FS
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SIO_000300: 1.458e0

ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 4.67e-1

MQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.98e-2

DP
type: SiteQuality
SIO_000300: 1.026652e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 1.343363782912413e-4
allele num: 7444
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.141849e6

QD
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SIO_000300: 1.306e1

VQSLOD
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InbreedingCoeff
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FS
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -8.25e-1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 49752
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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MQRankSum
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QD
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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allele frequency: 2.206044562100154e-4
allele num: 9066
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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DP
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 55830
num of homozygotes: 0

East Asian
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South Asian
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Other
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MQ
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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Other
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European (Finnish)
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FS
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele num: 7844
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Latino
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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FS
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.084230330321069e-5
allele num: 64846
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East Asian
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allele frequency: 0.0e0
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African
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South Asian
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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FS
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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Latino
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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QD
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FS
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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Latino
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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num of homozygotes: 0

FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65584
num of homozygotes: 0

East Asian
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African
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Other
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Latino
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South Asian
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European (Finnish)
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allele frequency: 1.515610791148833e-4
allele num: 6598
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DP
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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European (Non-Finnish)
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East Asian
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African
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Other
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DP
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QD
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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South Asian
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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DP
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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QD
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MQRankSum
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DP
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FS
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VQSLOD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508250128201261e-5
allele num: 66302
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.213e1

DP
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SIO_000300: 1.661557e6

BaseQRankSum
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SIO_000300: 3.85e0

MQ
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SIO_000300: 5.927e1

ClippingRankSum
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ReadPosRankSum
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VQSLOD
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SIO_000300: 3.02e-1

MQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 1.126126126126126e-3
allele num: 888
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

African
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allele count: 30
allele frequency: 3.076923076923077e-3
allele num: 9750
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.507749834147518e-5
allele num: 66324
num of homozygotes: 0

InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
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MQRankSum
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SIO_000300: 1.93e-1

VQSLOD
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DP
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BaseQRankSum
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QD
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SIO_000300: 1.325e1

ClippingRankSum
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SIO_000300: -3.14e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66478
num of homozygotes: 0

East Asian
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Other
type: Population
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DP
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SIO_000300: 1.666831e6

InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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FS
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SIO_000300: 2.383e0

ClippingRankSum
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SIO_000300: 5.69e-1

ReadPosRankSum
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SIO_000300: 4.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023331968890708e-4
allele num: 9772
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.668787e6

VQSLOD
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MQ
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ReadPosRankSum
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MQRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 5.3e-1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 4.0e-4

ClippingRankSum
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SIO_000300: -3.07e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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SIO_000300: 1.77e0

InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.3e-1

ReadPosRankSum
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DP
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SIO_000300: 1.668787e6

MQRankSum
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SIO_000300: 6.34e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 1.023122570083896e-4
allele num: 9774
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.606882168925965e-4
allele num: 11508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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QD
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.125e0

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503985561738607e-5
allele num: 66490
num of homozygotes: 0

Latino
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Other
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European (Finnish)
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MQRankSum
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QD
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FS
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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Other
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European (Non-Finnish)
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allele num: 66204
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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VQSLOD
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MQ
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QD
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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African
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South Asian
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MQ
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Latino
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African
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Other
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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QD
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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South Asian
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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MQRankSum
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FS
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele num: 6542
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African
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European (Non-Finnish)
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South Asian
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Other
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Latino
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East Asian
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DP
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MQ
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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South Asian
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Latino
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Other
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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DP
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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QD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 7.75e1
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GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.634093731616446e-5
allele num: 61196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

DP
type: SiteQuality
SIO_000300: 1.451805e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.44e1

GenotypeQuality
all individuals: 4830
bin: 9.75e1
variant carriers: 73

GenotypeQuality
all individuals: 1465
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.974723538704581e-4
allele num: 60768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14292
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.398068124046772e-3
allele num: 7868
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.219512195121951e-3
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 4.153913423699169e-3
allele num: 9148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.581777918380259e-4
allele num: 6322
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 1.008267795926598e-3
allele num: 9918
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.427e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.436955e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 516
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variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
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GenotypeQuality
all individuals: 243
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variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 15876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 3179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27230
bin: 6.25e1
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GenotypeQuality
all individuals: 1400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4773
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60384
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.060599877576005e-4
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.21654501216545e-3
allele num: 822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14216
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.048e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

DP
type: SiteQuality
SIO_000300: 1.410631e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.093e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 9.91e0

GenotypeQuality
all individuals: 15876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4773
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 158
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
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variant carriers: 0

GenotypeQuality
all individuals: 348
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variant carriers: 0

GenotypeQuality
all individuals: 27230
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variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7824
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.034327518289252e-5
allele num: 14216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.093e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

DP
type: SiteQuality
SIO_000300: 1.410631e6

FS
type: SiteQuality
SIO_000300: 4.048e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 9.91e0

GenotypeQuality
all individuals: 185
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
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variant carriers: 0

GenotypeQuality
all individuals: 4216
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
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variant carriers: 0

GenotypeQuality
all individuals: 205
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variant carriers: 0

GenotypeQuality
all individuals: 607
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variant carriers: 0

GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 4894
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
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variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19287
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.25e1
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GenotypeQuality
all individuals: 4783
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 2248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 11
allele frequency: 1.15716389648643e-3
allele num: 9506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.379748546708125e-5
allele num: 59176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

FS
type: SiteQuality
SIO_000300: 9.389999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 1.325863e6

QD
type: SiteQuality
SIO_000300: 1.31e1

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
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variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 422
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variant carriers: 0

GenotypeQuality
all individuals: 263
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4216
bin: 2.75e1
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GenotypeQuality
all individuals: 364
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GenotypeQuality
all individuals: 205
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GenotypeQuality
all individuals: 1148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4783
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4894
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19095
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.221728504776716e-4
allele num: 9002
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

DP
type: SiteQuality
SIO_000300: 1.325863e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

QD
type: SiteQuality
SIO_000300: 1.31e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

FS
type: SiteQuality
SIO_000300: 9.389999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
all individuals: 5381
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
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GenotypeQuality
all individuals: 4559
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 537
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GenotypeQuality
all individuals: 1069
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GenotypeQuality
all individuals: 723
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GenotypeQuality
all individuals: 216
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 135
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GenotypeQuality
all individuals: 4770
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GenotypeQuality
all individuals: 2510
bin: 3.75e1
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GenotypeQuality
all individuals: 17367
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GenotypeQuality
all individuals: 242
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GenotypeQuality
all individuals: 341
bin: 1.75e1
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GenotypeQuality
all individuals: 493
bin: 5.25e1
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GenotypeQuality
all individuals: 204
bin: 9.25e1
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GenotypeQuality
all individuals: 245
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.401591945030274e-5
allele num: 58796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: -9.491000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4