1-3389822-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389822
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389822
    reference: chr 1
allele count: 3
allele frequency: 2.552322613578356e-5
allele num: 117540
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1175+28G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.462+28G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.311+28G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.287+28G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.311+28G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.311+28G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.338+28G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.287+28G>C
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4740
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-3389827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389827
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389827
    reference: chr 1
allele count: 19
allele frequency: 1.620524367569043e-4
allele num: 117246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.311+33C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.338+33C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.287+33C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.287+33C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.311+33C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.311+33C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1175+33C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.462+33C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-3389828-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389828
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389828
    reference: chr 1
allele count: 1
allele frequency: 8.530239699735563e-6
allele num: 117230
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1175+34T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.287+34T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.338+34T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.311+34T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.287+34T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.311+34T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.311+34T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.462+34T>C
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36208
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-3389830-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389830
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389830
    reference: chr 1
allele count: 4
allele frequency: 3.413144017611823e-5
allele num: 117194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.287+36A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1175+36A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.287+36A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.311+36A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.311+36A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.338+36A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.311+36A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.462+36A>G
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-3389833-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389833
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389833
    reference: chr 1
allele count: 1
allele frequency: 8.553880895762407e-6
allele num: 116906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.311+39A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.338+39A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.287+39A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.287+39A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1175+39A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.311+39A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.311+39A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.462+39A>G
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

1-3389844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389844
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389844
    reference: chr 1
allele count: 1
allele frequency: 8.610446193321739e-6
allele num: 116138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.287+50C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.311+50C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1175+50C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.311+50C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.462+50C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.311+50C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.338+50C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.287+50C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-3389845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389845
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389845
    reference: chr 1
allele count: 16
allele frequency: 1.37684152554041e-4
allele num: 116208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.311+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.287+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1175+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.338+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.462+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.287+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.311+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.311+51C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

1-3389910-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389910
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389910
    reference: chr 1
allele count: 1
allele frequency: 9.043390186112971e-6
allele num: 110578
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-47C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-47C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-47C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-47C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-47C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-47C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-47C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-47C>G
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/1-3389911-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389911
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389911
    reference: chr 1
allele count: 132
allele frequency: 1.189725101397026e-3
allele num: 110950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-46A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-46A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-46A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-46A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-46A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-46A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-46A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-46A>C
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 21176
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8411
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

1-3389913-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389913
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389913
    reference: chr 1
allele count: 1
allele frequency: 9.020223340729916e-6
allele num: 110862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-44G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-44G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-44G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-44G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-44G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-44G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-44G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-44G>T
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7632
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7738
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

1-3389918-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389918
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389918
    reference: chr 1
allele count: 442
allele frequency: 4.744627407200669e-3
allele num: 93158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-39C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-39C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-39C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-39C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-39C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-39C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-39C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-39C>G
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 4.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 3.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 4.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 3.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 8151
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21778
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 6.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 7609
  bin: 2.5e0
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 7.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 4.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 1.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 7.5e0
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 5.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 4.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 17
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS

http://identifiers.org/exac.variant/1-3389920-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389920
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389920
    reference: chr 1
allele count: 9
allele frequency: 8.190902637470649e-5
allele num: 109878
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-37A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-37A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-37A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-37A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-37A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-37A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-37A>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-37A>C
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27804
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10326
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38950
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-3389923-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389923
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389923
    reference: chr 1
allele count: 1
allele frequency: 9.022502120287998e-6
allele num: 110834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-34C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-34C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-34C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-34C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-34C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-34C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-34C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-34C>A
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40076
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-3389924-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389924
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389924
    reference: chr 1
allele count: 2
allele frequency: 1.80173687434687e-5
allele num: 111004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-33A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-33A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-33A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-33A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-33A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-33A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-33A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-33A>G
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6493
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-3389927-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389927
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389927
    reference: chr 1
allele count: 3
allele frequency: 2.699346758084544e-5
allele num: 111138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-30G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-30G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-30G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-30G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-30G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-30G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-30G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-30G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10887
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-3389928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389928
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389928
    reference: chr 1
allele count: 1
allele frequency: 9.003007004339449e-6
allele num: 111074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-29C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-29C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-29C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-29C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-29C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-29C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-29C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-29C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

1-3389936-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389936
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389936
    reference: chr 1
allele count: 1
allele frequency: 8.960734063334468e-6
allele num: 111598
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-21G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-21G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-21G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-21G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-21G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-21G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-21G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-21G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

1-3389941-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389941
    reference: chr 1
allele count: 1
allele frequency: 8.936710218234464e-6
allele num: 111898
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-16C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-16C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-16C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-16C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-16C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-16C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-16C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-16C>G
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6630
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

1-3389941-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389941
    reference: chr 1
allele count: 1
allele frequency: 8.936710218234464e-6
allele num: 111898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-16C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-16C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-16C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-16C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-16C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-16C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-16C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-16C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/1-3389954-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389954
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389954
    reference: chr 1
allele count: 3
allele frequency: 2.655243220278978e-5
allele num: 112984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.339-3C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.463-3C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.312-3C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.288-3C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1176-3C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.288-3C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.312-3C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.312-3C>A
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42960
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1176-3C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

1-3389959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389959
    reference: chr 1
allele count: 1
allele frequency: 8.809330843229149e-6
allele num: 113516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.341G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1178G>A
  hgvsp: ENSP00000367629.4:p.Ser393Asn
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.314G>A
  hgvsp: ENSP00000367622.2:p.Ser105Asn
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.290G>A
  hgvsp: ENSP00000408887.2:p.Ser97Asn
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.314G>A
  hgvsp: ENSP00000411936.1:p.Ser105Asn
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.290G>A
  hgvsp: ENSP00000390853.1:p.Ser97Asn
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.314G>A
  hgvsp: ENSP00000367624.1:p.Ser105Asn
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.465G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser393Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

1-3389963-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389963
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389963
    reference: chr 1
allele count: 1
allele frequency: 8.772237622372715e-6
allele num: 113996
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1182C>G
  hgvsp: ENSP00000367629.4:p.Ser394Arg
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.469C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.345C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.294C>G
  hgvsp: ENSP00000390853.1:p.Ser98Arg
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.318C>G
  hgvsp: ENSP00000411936.1:p.Ser106Arg
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.294C>G
  hgvsp: ENSP00000408887.2:p.Ser98Arg
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.318C>G
  hgvsp: ENSP00000367624.1:p.Ser106Arg
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.318C>G
  hgvsp: ENSP00000367622.2:p.Ser106Arg
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser394Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

1-3389966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389966
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389966
    reference: chr 1
allele count: 1
allele frequency: 8.7340821353084e-6
allele num: 114494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.321C>T
  hgvsp: ENST00000378373.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1185C>T
  hgvsp: ENST00000378378.4:c.1185C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.297C>T
  hgvsp: ENST00000418137.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.321C>T
  hgvsp: ENST00000378371.2:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.297C>T
  hgvsp: ENST00000413250.2:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.321C>T
  hgvsp: ENST00000445297.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.348C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.472C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn395Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

1-3389969-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389969
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389969
    reference: chr 1
allele count: 2
allele frequency: 1.733522865166592e-5
allele num: 115372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.324C>T
  hgvsp: ENST00000445297.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.351C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.324C>T
  hgvsp: ENST00000378371.2:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1188C>T
  hgvsp: ENST00000378378.4:c.1188C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.300C>T
  hgvsp: ENST00000413250.2:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.475C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.324C>T
  hgvsp: ENST00000378373.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.300C>T
  hgvsp: ENST00000418137.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13858
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala396Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

1-3389970-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389970
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389970
    reference: chr 1
allele count: 5
allele frequency: 4.320102300022464e-5
allele num: 115738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.301G>A
  hgvsp: ENSP00000390853.1:p.Ala101Thr
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1189G>A
  hgvsp: ENSP00000367629.4:p.Ala397Thr
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.325G>A
  hgvsp: ENSP00000411936.1:p.Ala109Thr
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.325G>A
  hgvsp: ENSP00000367622.2:p.Ala109Thr
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.301G>A
  hgvsp: ENSP00000408887.2:p.Ala101Thr
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.352G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.325G>A
  hgvsp: ENSP00000367624.1:p.Ala109Thr
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.476G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala397Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

1-3389974-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389974
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389974
    reference: chr 1
allele count: 1
allele frequency: 8.587376556462001e-6
allele num: 116450
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1193T>C
  hgvsp: ENSP00000367629.4:p.Phe398Ser
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.329T>C
  hgvsp: ENSP00000411936.1:p.Phe110Ser
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.329T>C
  hgvsp: ENSP00000367622.2:p.Phe110Ser
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.305T>C
  hgvsp: ENSP00000390853.1:p.Phe102Ser
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.329T>C
  hgvsp: ENSP00000367624.1:p.Phe110Ser
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.305T>C
  hgvsp: ENSP00000408887.2:p.Phe102Ser
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.480T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.356T>C
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe398Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

1-3389976-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389976
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389976
    reference: chr 1
allele count: 1
allele frequency: 8.571918395336876e-6
allele num: 116660
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.307C>G
  hgvsp: ENSP00000408887.2:p.Arg103Gly
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.482C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.358C>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.331C>G
  hgvsp: ENSP00000411936.1:p.Arg111Gly
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.331C>G
  hgvsp: ENSP00000367624.1:p.Arg111Gly
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1195C>G
  hgvsp: ENSP00000367629.4:p.Arg399Gly
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.307C>G
  hgvsp: ENSP00000390853.1:p.Arg103Gly
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.331C>G
  hgvsp: ENSP00000367622.2:p.Arg111Gly
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg399Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-3389976-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389976
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389976
    reference: chr 1
allele count: 2
allele frequency: 1.714383679067375e-5
allele num: 116660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.482C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1195C>T
  hgvsp: ENSP00000367629.4:p.Arg399Ter
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.331C>T
  hgvsp: ENSP00000411936.1:p.Arg111Ter
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.358C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.331C>T
  hgvsp: ENSP00000367622.2:p.Arg111Ter
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.307C>T
  hgvsp: ENSP00000408887.2:p.Arg103Ter
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.307C>T
  hgvsp: ENSP00000390853.1:p.Arg103Ter
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.331C>T
  hgvsp: ENSP00000367624.1:p.Arg111Ter
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6867
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg399Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

1-3389981-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389981
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389981
    reference: chr 1
allele count: 1
allele frequency: 8.503401360544217e-6
allele num: 117600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.336G>A
  hgvsp: ENST00000378373.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1200G>A
  hgvsp: ENST00000378378.4:c.1200G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.312G>A
  hgvsp: ENST00000413250.2:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.336G>A
  hgvsp: ENST00000445297.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.363G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.312G>A
  hgvsp: ENST00000418137.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.336G>A
  hgvsp: ENST00000378371.2:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.487G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu400Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-3389987-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389987
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389987
    reference: chr 1
allele count: 1
allele frequency: 8.462814393554721e-6
allele num: 118164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1206G>A
  hgvsp: ENST00000378378.4:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.369G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.342G>A
  hgvsp: ENST00000378373.1:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.493G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.342G>A
  hgvsp: ENST00000378371.2:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.318G>A
  hgvsp: ENST00000418137.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.342G>A
  hgvsp: ENST00000445297.1:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.318G>A
  hgvsp: ENST00000413250.2:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu402Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-3389993-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389993
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389993
    reference: chr 1
allele count: 1
allele frequency: 8.432698632216282e-6
allele num: 118586
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1212G>C
  hgvsp: ENSP00000367629.4:p.Glu404Asp
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.348G>C
  hgvsp: ENSP00000367624.1:p.Glu116Asp
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.348G>C
  hgvsp: ENSP00000411936.1:p.Glu116Asp
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.348G>C
  hgvsp: ENSP00000367622.2:p.Glu116Asp
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.324G>C
  hgvsp: ENSP00000390853.1:p.Glu108Asp
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.324G>C
  hgvsp: ENSP00000408887.2:p.Glu108Asp
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.499G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.375G>C
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu404Asp
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

1-3389995-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389995
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389995
    reference: chr 1
allele count: 1
allele frequency: 8.429286713758282e-6
allele num: 118634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.326T>C
  hgvsp: ENSP00000390853.1:p.Ile109Thr
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.326T>C
  hgvsp: ENSP00000408887.2:p.Ile109Thr
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.350T>C
  hgvsp: ENSP00000367622.2:p.Ile117Thr
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.350T>C
  hgvsp: ENSP00000411936.1:p.Ile117Thr
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.377T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.501T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1214T>C
  hgvsp: ENSP00000367629.4:p.Ile405Thr
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.350T>C
  hgvsp: ENSP00000367624.1:p.Ile117Thr
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6930
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile405Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

1-3389995-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389995
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389995
    reference: chr 1
allele count: 268
allele frequency: 2.25904883928722e-3
allele num: 118634
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.377T>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.501T>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.326T>G
  hgvsp: ENSP00000390853.1:p.Ile109Ser
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1214T>G
  hgvsp: ENSP00000367629.4:p.Ile405Ser
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.326T>G
  hgvsp: ENSP00000408887.2:p.Ile109Ser
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.350T>G
  hgvsp: ENSP00000367624.1:p.Ile117Ser
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.350T>G
  hgvsp: ENSP00000411936.1:p.Ile117Ser
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.350T>G
  hgvsp: ENSP00000367622.2:p.Ile117Ser
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29885
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 15484
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46570
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile405Ser
num of homozygotes: 1
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

1-3389996-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3389996
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3389996
    reference: chr 1
allele count: 1
allele frequency: 8.428150021070375e-6
allele num: 118650
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.502T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.351T>C
  hgvsp: ENST00000378373.1:c.351T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.351T>C
  hgvsp: ENST00000378371.2:c.351T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.351T>C
  hgvsp: ENST00000445297.1:c.351T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.327T>C
  hgvsp: ENST00000413250.2:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.327T>C
  hgvsp: ENST00000418137.1:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1215T>C
  hgvsp: ENST00000378378.4:c.1215T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.378T>C
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile405Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-3390003-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390003
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390003
    reference: chr 1
allele count: 6
allele frequency: 5.055270962523591e-5
allele num: 118688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.358C>T
  hgvsp: ENSP00000367622.2:p.Arg120Trp
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.385C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.509C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.358C>T
  hgvsp: ENSP00000411936.1:p.Arg120Trp
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1222C>T
  hgvsp: ENSP00000367629.4:p.Arg408Trp
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.358C>T
  hgvsp: ENSP00000367624.1:p.Arg120Trp
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.334C>T
  hgvsp: ENSP00000408887.2:p.Arg112Trp
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.334C>T
  hgvsp: ENSP00000390853.1:p.Arg112Trp
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30052
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg408Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-3390004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390004
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390004
    reference: chr 1
allele count: 2
allele frequency: 1.681463545870325e-5
allele num: 118944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.510G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.335G>A
  hgvsp: ENSP00000408887.2:p.Arg112Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.335G>A
  hgvsp: ENSP00000390853.1:p.Arg112Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.359G>A
  hgvsp: ENSP00000411936.1:p.Arg120Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1223G>A
  hgvsp: ENSP00000367629.4:p.Arg408Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.359G>A
  hgvsp: ENSP00000367622.2:p.Arg120Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.359G>A
  hgvsp: ENSP00000367624.1:p.Arg120Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.386G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg408Gln
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-3390004-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390004
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390004
    reference: chr 1
allele count: 1
allele frequency: 8.407317729351627e-6
allele num: 118944
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1223G>C
  hgvsp: ENSP00000367629.4:p.Arg408Pro
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.335G>C
  hgvsp: ENSP00000408887.2:p.Arg112Pro
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.386G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.335G>C
  hgvsp: ENSP00000390853.1:p.Arg112Pro
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.359G>C
  hgvsp: ENSP00000367622.2:p.Arg120Pro
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.359G>C
  hgvsp: ENSP00000411936.1:p.Arg120Pro
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.359G>C
  hgvsp: ENSP00000367624.1:p.Arg120Pro
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.510G>C
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6892
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg408Pro
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

1-3390007-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390007
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390007
    reference: chr 1
allele count: 1
allele frequency: 8.396446623788812e-6
allele num: 119098
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1226C>T
  hgvsp: ENSP00000367629.4:p.Pro409Leu
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.338C>T
  hgvsp: ENSP00000408887.2:p.Pro113Leu
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.362C>T
  hgvsp: ENSP00000367622.2:p.Pro121Leu
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.389C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.513C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.362C>T
  hgvsp: ENSP00000367624.1:p.Pro121Leu
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.338C>T
  hgvsp: ENSP00000390853.1:p.Pro113Leu
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.362C>T
  hgvsp: ENSP00000411936.1:p.Pro121Leu
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30427
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro409Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

1-3390008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390008
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390008
    reference: chr 1
allele count: 307
allele frequency: 2.577665827036104e-3
allele num: 119100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.363G>A
  hgvsp: ENST00000445297.1:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.339G>A
  hgvsp: ENST00000413250.2:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.363G>A
  hgvsp: ENST00000378371.2:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.514G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1227G>A
  hgvsp: ENST00000378378.4:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.339G>A
  hgvsp: ENST00000418137.1:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.363G>A
  hgvsp: ENST00000378373.1:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.390G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 30451
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15338
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 9.75e1
  variant carriers: 302
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro409Pro
num of homozygotes: 3
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

1-3390011-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390011
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390011
    reference: chr 1
allele count: 2
allele frequency: 1.677430176968884e-5
allele num: 119230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.342G>A
  hgvsp: ENST00000413250.2:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.342G>A
  hgvsp: ENST00000418137.1:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.366G>A
  hgvsp: ENST00000378371.2:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.517G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1230G>A
  hgvsp: ENST00000378378.4:c.1230G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.366G>A
  hgvsp: ENST00000378373.1:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.366G>A
  hgvsp: ENST00000445297.1:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.393G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6975
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ala410Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

1-3390011-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390011
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390011
    reference: chr 1
allele count: 1
allele frequency: 8.387150884844418e-6
allele num: 119230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.393G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.342G>T
  hgvsp: ENST00000413250.2:c.342G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.517G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1230G>T
  hgvsp: ENST00000378378.4:c.1230G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.366G>T
  hgvsp: ENST00000378373.1:c.366G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.366G>T
  hgvsp: ENST00000445297.1:c.366G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.366G>T
  hgvsp: ENST00000378371.2:c.366G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.342G>T
  hgvsp: ENST00000418137.1:c.342G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala410Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-3390014-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390014
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390014
    reference: chr 1
allele count: 8
allele frequency: 6.707695403551725e-5
allele num: 119266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.345C>T
  hgvsp: ENST00000418137.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.345C>T
  hgvsp: ENST00000413250.2:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.369C>T
  hgvsp: ENST00000445297.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.396C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.369C>T
  hgvsp: ENST00000378371.2:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.369C>T
  hgvsp: ENST00000378373.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1233C>T
  hgvsp: ENST00000378378.4:c.1233C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.520C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys411Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-3390015-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390015
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390015
    reference: chr 1
allele count: 22
allele frequency: 1.843225309159154e-4
allele num: 119356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.370G>A
  hgvsp: ENSP00000367624.1:p.Gly124Arg
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.521G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.346G>A
  hgvsp: ENSP00000390853.1:p.Gly116Arg
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.370G>A
  hgvsp: ENSP00000411936.1:p.Gly124Arg
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1234G>A
  hgvsp: ENSP00000367629.4:p.Gly412Arg
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.370G>A
  hgvsp: ENSP00000367622.2:p.Gly124Arg
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.397G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.346G>A
  hgvsp: ENSP00000408887.2:p.Gly116Arg
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10497
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly412Arg
num of homozygotes: 1
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-3390017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390017
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390017
    reference: chr 1
allele count: 1
allele frequency: 8.37184381488179e-6
allele num: 119448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.372G>A
  hgvsp: ENST00000445297.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.399G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.348G>A
  hgvsp: ENST00000418137.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1236G>A
  hgvsp: ENST00000378378.4:c.1236G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.348G>A
  hgvsp: ENST00000413250.2:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.372G>A
  hgvsp: ENST00000378371.2:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.523G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.372G>A
  hgvsp: ENST00000378373.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47967
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly412Gly
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-3390021-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390021
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390021
    reference: chr 1
allele count: 1
allele frequency: 8.365540664893172e-6
allele num: 119538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.352C>T
  hgvsp: ENST00000418137.1:c.352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.352C>T
  hgvsp: ENST00000413250.2:c.352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.376C>T
  hgvsp: ENST00000445297.1:c.376C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.527C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.376C>T
  hgvsp: ENST00000378373.1:c.376C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1240C>T
  hgvsp: ENST00000378378.4:c.1240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.376C>T
  hgvsp: ENST00000378371.2:c.376C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.403C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu414Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

1-3390027-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390027
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390027
    reference: chr 1
allele count: 10
allele frequency: 8.361483661660924e-5
allele num: 119596
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.382A>G
  hgvsp: ENSP00000367624.1:p.Met128Val
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.409A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1246A>G
  hgvsp: ENSP00000367629.4:p.Met416Val
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.382A>G
  hgvsp: ENSP00000367622.2:p.Met128Val
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.382A>G
  hgvsp: ENSP00000411936.1:p.Met128Val
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.533A>G
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.358A>G
  hgvsp: ENSP00000390853.1:p.Met120Val
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.358A>G
  hgvsp: ENSP00000408887.2:p.Met120Val
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48270
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met416Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

1-3390032-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390032
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390032
    reference: chr 1
allele count: 2
allele frequency: 1.671849399806065e-5
allele num: 119628
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1251C>T
  hgvsp: ENST00000378378.4:c.1251C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.387C>T
  hgvsp: ENST00000378373.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.538C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.363C>T
  hgvsp: ENST00000418137.1:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.363C>T
  hgvsp: ENST00000413250.2:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.414C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.387C>T
  hgvsp: ENST00000378371.2:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.387C>T
  hgvsp: ENST00000445297.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Leu417Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-3390035-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390035
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390035
    reference: chr 1
allele count: 1
allele frequency: 8.35952651641811e-6
allele num: 119624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.366C>T
  hgvsp: ENST00000418137.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.390C>T
  hgvsp: ENST00000445297.1:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.390C>T
  hgvsp: ENST00000378371.2:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.417C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1254C>T
  hgvsp: ENST00000378378.4:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.366C>T
  hgvsp: ENST00000413250.2:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.541C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.390C>T
  hgvsp: ENST00000378373.1:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser418Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ

1-3390041-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390041
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390041
    reference: chr 1
allele count: 2
allele frequency: 1.672324698563473e-5
allele num: 119594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.396G>A
  hgvsp: ENST00000445297.1:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.372G>A
  hgvsp: ENST00000413250.2:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1260G>A
  hgvsp: ENST00000378378.4:c.1260G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.423G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.396G>A
  hgvsp: ENST00000378373.1:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.547G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.372G>A
  hgvsp: ENST00000418137.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.396G>A
  hgvsp: ENST00000378371.2:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu420Leu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

1-3390045-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390045
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390045
    reference: chr 1
allele count: 11
allele frequency: 9.200709291043527e-5
allele num: 119556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.376C>T
  hgvsp: ENSP00000408887.2:p.Leu126Phe
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.376C>T
  hgvsp: ENSP00000390853.1:p.Leu126Phe
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.400C>T
  hgvsp: ENSP00000411936.1:p.Leu134Phe
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.427C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.400C>T
  hgvsp: ENSP00000367622.2:p.Leu134Phe
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.551C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1264C>T
  hgvsp: ENSP00000367629.4:p.Leu422Phe
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.400C>T
  hgvsp: ENSP00000367624.1:p.Leu134Phe
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu422Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

1-3390047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390047
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390047
    reference: chr 1
allele count: 1
allele frequency: 8.366940544520491e-6
allele num: 119518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.402C>T
  hgvsp: ENST00000445297.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1266C>T
  hgvsp: ENST00000378378.4:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.378C>T
  hgvsp: ENST00000413250.2:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.378C>T
  hgvsp: ENST00000418137.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.402C>T
  hgvsp: ENST00000378371.2:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.402C>T
  hgvsp: ENST00000378373.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.429C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.553C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu422Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-3390049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390049
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390049
    reference: chr 1
allele count: 1
allele frequency: 8.367920739054759e-6
allele num: 119504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.404C>T
  hgvsp: ENSP00000367624.1:p.Pro135Leu
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1268C>T
  hgvsp: ENSP00000367629.4:p.Pro423Leu
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.404C>T
  hgvsp: ENSP00000411936.1:p.Pro135Leu
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.380C>T
  hgvsp: ENSP00000390853.1:p.Pro127Leu
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.380C>T
  hgvsp: ENSP00000408887.2:p.Pro127Leu
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.404C>T
  hgvsp: ENSP00000367622.2:p.Pro135Leu
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.555C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.431C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro423Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

1-3390067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390067
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390067
    reference: chr 1
allele count: 1
allele frequency: 8.39433214693439e-6
allele num: 119128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.398G>A
  hgvsp: ENSP00000408887.2:p.Arg133Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.422G>A
  hgvsp: ENSP00000367622.2:p.Arg141Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.422G>A
  hgvsp: ENSP00000367624.1:p.Arg141Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1286G>A
  hgvsp: ENSP00000367629.4:p.Arg429Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.398G>A
  hgvsp: ENSP00000390853.1:p.Arg133Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.449G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.422G>A
  hgvsp: ENSP00000411936.1:p.Arg141Gln
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.573G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30963
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg429Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

1-3390068-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390068
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390068
    reference: chr 1
allele count: 1
allele frequency: 8.396869646995599e-6
allele num: 119092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.574G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.450G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000411936
  ensembl transcript: ENST00000445297
  gene symbol: ARHGEF16
  hgvsc: ENST00000445297.1:c.423G>T
  hgvsp: ENST00000445297.1:c.423G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.399G>T
  hgvsp: ENST00000418137.1:c.399G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.423G>T
  hgvsp: ENST00000378373.1:c.423G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.399G>T
  hgvsp: ENST00000413250.2:c.399G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1287G>T
  hgvsp: ENST00000378378.4:c.1287G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.423G>T
  hgvsp: ENST00000378371.2:c.423G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg429Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

1-3390096-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390096
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390096
    reference: chr 1
allele count: 2
allele frequency: 1.693050029628376e-5
allele num: 118130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+10C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+10C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+10C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+10C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+10C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.478C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+10C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6840
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46820
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

1-3390108-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390108
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390108
    reference: chr 1
allele count: 1
allele frequency: 8.510928031592565e-6
allele num: 117496
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+22G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.490G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+22G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+22G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+22G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+22G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+22G>C
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6742
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

1-3390113-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390113
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390113
    reference: chr 1
allele count: 9
allele frequency: 7.673680979502745e-5
allele num: 117284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+27C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+27C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+27C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+27C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.495C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+27C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+27C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 46173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

1-3390114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390114
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390114
    reference: chr 1
allele count: 1
allele frequency: 8.533588203167667e-6
allele num: 117184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+28G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.496G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+28G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+28G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+28G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+28G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+28G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-3390125-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390125
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390125
    reference: chr 1
allele count: 1
allele frequency: 8.585312247806453e-6
allele num: 116478
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+39C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+39C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+39C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+39C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.507C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+39C>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+39C>A
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14394
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

1-3390125-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390125
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390125
    reference: chr 1
allele count: 3
allele frequency: 2.575593674341936e-5
allele num: 116478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+39C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+39C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.507C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+39C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+39C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+39C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+39C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29777
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

1-3390129-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390129
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390129
    reference: chr 1
allele count: 1
allele frequency: 8.6229197206174e-6
allele num: 115970
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.511G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+43G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+43G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+43G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+43G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+43G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+43G>C
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-3390137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390137
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390137
    reference: chr 1
allele count: 3
allele frequency: 2.609149417289963e-5
allele num: 114980
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.519C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+51C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+51C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29186
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

1-3390138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390138
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390138
    reference: chr 1
allele count: 1
allele frequency: 8.699737267934509e-6
allele num: 114946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+52G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+52G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+52G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+52G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+52G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.520G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+52G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

1-3390145-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390145
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390145
    reference: chr 1
allele count: 1
allele frequency: 8.846426043878273e-6
allele num: 113040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+59G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+59G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+59G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+59G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+59G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+59G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.527G>C
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-3390154-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390154
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390154
    reference: chr 1
allele count: 4
allele frequency: 3.622335319580533e-5
allele num: 110426
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+68C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+68C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+68C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+68C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.536C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+68C>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+68C>T
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13221
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7039
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40940
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

1-3390155-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390155
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390155
    reference: chr 1
allele count: 2
allele frequency: 1.817487868268479e-5
allele num: 110042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+69G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+69G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+69G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+69G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+69G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+69G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.537G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5455
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-3390155-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390155
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390155
    reference: chr 1
allele count: 144
allele frequency: 1.308591265153305e-3
allele num: 110042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+69G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+69G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+69G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+69G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+69G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.537G>T
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+69G>T
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13258
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 27086
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.75e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7330
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

1-3390160-G-GAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390160
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390162
    reference: chr 1
allele count: 1
allele frequency: 9.316712318557028e-6
allele num: 107334
alternate allele: GAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+75_441+76insCA
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+75_1305+76insCA
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+75_441+76insCA
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.543_544insCA
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+75_417+76insCA
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+75_417+76insCA
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+75_592+76insCA
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9751
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

1-3390162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390162
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390162
    reference: chr 1
allele count: 1
allele frequency: 9.477774618519572e-6
allele num: 105510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+76G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.544G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+76G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+76G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+76G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+76G>A
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+76G>A
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24459
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-3390165-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390165
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390165
    reference: chr 1
allele count: 1
allele frequency: 9.616124317255174e-6
allele num: 103992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+79T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+79T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.547T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+79T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+79T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+79T>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+79T>C
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23504
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12820
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

1-3390169-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3390169
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 3390169
    reference: chr 1
allele count: 2
allele frequency: 1.981414333551289e-5
allele num: 100938
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367629
  ensembl transcript: ENST00000378378
  gene symbol: ARHGEF16
  hgvsc: ENST00000378378.4:c.1305+83G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367624
  ensembl transcript: ENST00000378373
  gene symbol: ARHGEF16
  hgvsc: ENST00000378373.1:c.441+83G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000485984
  gene symbol: ARHGEF16
  hgvsc: ENST00000485984.1:n.592+83G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000367622
  ensembl transcript: ENST00000378371
  gene symbol: ARHGEF16
  hgvsc: ENST00000378371.2:c.441+83G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000390853
  ensembl transcript: ENST00000418137
  gene symbol: ARHGEF16
  hgvsc: ENST00000418137.1:c.417+83G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130762
  ensembl transcript: ENST00000464620
  gene symbol: ARHGEF16
  hgvsc: ENST00000464620.1:n.551G>C
  variant of: http://identifiers.org/hgnc/15515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130762
  ensembl protein: ENSP00000408887
  ensembl transcript: ENST00000413250
  gene symbol: ARHGEF16
  hgvsc: ENST00000413250.2:c.417+83G>C
  variant of: http://identifiers.org/hgnc/15515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 970
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36219
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.628915290850178e-5
allele num: 64810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.183e0

VQSLOD
type: SiteQuality
SIO_000300: -8.816000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.874e1

DP
type: SiteQuality
SIO_000300: 2.74188e6

FS
type: SiteQuality
SIO_000300: 3.428e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-1

GenotypeQuality
all individuals: 2390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4520
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36220
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544878727019929e-5
allele num: 64730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.654984423676012e-3
allele num: 10272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14636
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.053e0

QD
type: SiteQuality
SIO_000300: 1.37e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

FS
type: SiteQuality
SIO_000300: 5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 2.737386e6

GenotypeQuality
all individuals: 2506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2760
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2497
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545690614566588e-5
allele num: 64696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.735265e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.379e1

MQRankSum
type: SiteQuality
SIO_000300: -4.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

GenotypeQuality
all individuals: 2387
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2760
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4400
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36209
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 2
allele frequency: 2.318034306907742e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64680
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.949697796841489e-4
allele num: 10258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

FS
type: SiteQuality
SIO_000300: 1.142e0

QD
type: SiteQuality
SIO_000300: 1.333e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e-1

DP
type: SiteQuality
SIO_000300: 2.734144e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

GenotypeQuality
all individuals: 522
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548083472660846e-5
allele num: 64596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.154e0

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.468e0

QD
type: SiteQuality
SIO_000300: 1.588e1

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 2.730723e6

GenotypeQuality
all individuals: 773
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2508
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36211
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1823
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553856672260551e-5
allele num: 64356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

FS
type: SiteQuality
SIO_000300: 1.426e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

DP
type: SiteQuality
SIO_000300: 2.724737e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.719e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeQuality
all individuals: 514
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36219
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 1439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2387
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64360
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.463985945734921e-3
allele num: 10246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14028
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.182033096926714e-3
allele num: 846
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-2

DP
type: SiteQuality
SIO_000300: 2.72499e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.316e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

QD
type: SiteQuality
SIO_000300: 1.419e1

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeQuality
all individuals: 7757
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1424
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5430
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29490
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599641680263621e-5
allele num: 62514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.831e1

MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

FS
type: SiteQuality
SIO_000300: 3.765e0

DP
type: SiteQuality
SIO_000300: 1.932815e6

VQSLOD
type: SiteQuality
SIO_000300: -2.757e0

QD
type: SiteQuality
SIO_000300: 1.214e1

GenotypeQuality
all individuals: 1176
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 374
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 910
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7841
bin: 9.75e1
variant carriers: 130

GenotypeQuality
all individuals: 1353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 415
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1456
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.594845459474977e-5
allele num: 62702
num of homozygotes: 0

African
type: Population
allele count: 125
allele frequency: 1.294263822737627e-2
allele num: 9658
num of homozygotes: 1

Latino
type: Population
allele count: 4
allele frequency: 3.497726477789437e-4
allele num: 11436
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.2531328320802e-3
allele num: 798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.904719501335708e-5
allele num: 11230
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 5.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.41e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.67e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e-1

DP
type: SiteQuality
SIO_000300: 1.932148e6

GenotypeQuality
all individuals: 1440
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3418
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.038637307852098e-4
allele num: 9628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

DP
type: SiteQuality
SIO_000300: 1.930562e6

QD
type: SiteQuality
SIO_000300: 7.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
all individuals: 3246
bin: 2.25e1
variant carriers: 45

GenotypeQuality
all individuals: 409
bin: 8.25e1
variant carriers: 13

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1319
bin: 3.25e1
variant carriers: 31

GenotypeQuality
all individuals: 1473
bin: 1.75e1
variant carriers: 46

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1335
bin: 2.75e1
variant carriers: 35

GenotypeQuality
all individuals: 739
bin: 9.75e1
variant carriers: 110

GenotypeQuality
all individuals: 1107
bin: 3.75e1
variant carriers: 33

GenotypeQuality
all individuals: 4699
bin: 6.75e1
variant carriers: 17

GenotypeQuality
all individuals: 29035
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 936
bin: 7.75e1
variant carriers: 10

South Asian
type: Population
allele count: 35
allele frequency: 3.412636505460219e-3
allele num: 10256
num of homozygotes: 0

African
type: Population
allele count: 48
allele frequency: 6.369426751592357e-3
allele num: 7536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 193
allele frequency: 3.597658725720464e-3
allele num: 53646
num of homozygotes: 0

East Asian
type: Population
allele count: 59
allele frequency: 8.053508053508053e-3
allele num: 7326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 23
allele frequency: 5.491881566380133e-3
allele num: 4188
num of homozygotes: 0

Latino
type: Population
allele count: 81
allele frequency: 8.444537114261885e-3
allele num: 9592
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 4.885993485342019e-3
allele num: 614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.692e1

QD
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.17e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.851e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.517e0

DP
type: SiteQuality
SIO_000300: 1.751812e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 9.6751e1

GenotypeQuality
all individuals: 397
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1009
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 696
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 426
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 687
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.754078231889142e-4
allele num: 11402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.03179190751445e-5
allele num: 11072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.427354822122955e-5
allele num: 62234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.046901172529313e-4
allele num: 9552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.580278128950695e-4
allele num: 6328
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

DP
type: SiteQuality
SIO_000300: 1.520312e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.777e0

QD
type: SiteQuality
SIO_000300: 5.15e0

GenotypeQuality
all individuals: 6486
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3707
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1250
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.594692862154749e-5
allele num: 62708
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.222e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.022e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.466e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.514756e6

GenotypeQuality
all individuals: 988
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3775
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.185119123455217e-5
allele num: 62792
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

DP
type: SiteQuality
SIO_000300: 1.515259e6

QD
type: SiteQuality
SIO_000300: 1.059e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 40794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6520
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.59169770477191e-5
allele num: 62826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.25e-3
allele num: 800
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.517919e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

QD
type: SiteQuality
SIO_000300: 1.691e1

FS
type: SiteQuality
SIO_000300: 2.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.631e0

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

GenotypeQuality
all individuals: 40827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3861
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 449
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62844
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11202
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.518294e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e-1

FS
type: SiteQuality
SIO_000300: 5.491e0

VQSLOD
type: SiteQuality
SIO_000300: -3.068e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 9.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

QD
type: SiteQuality
SIO_000300: 1.762e1

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4123
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6596
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.586495748191395e-5
allele num: 63032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.798e0

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.989e0

FS
type: SiteQuality
SIO_000300: 1.1456e1

DP
type: SiteQuality
SIO_000300: 1.527501e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e0

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.93e-1

GenotypeQuality
all individuals: 246
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63158
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 8.83e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

FS
type: SiteQuality
SIO_000300: 1.239e1

VQSLOD
type: SiteQuality
SIO_000300: -2.063e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 1.533449e6

GenotypeQuality
all individuals: 220
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 1184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 92
bin: 4.75e1
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GenotypeQuality
all individuals: 1443
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6630
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583330694448843e-5
allele num: 63158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 1.239e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 8.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.063e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.533449e6

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.722624519866507e-5
allele num: 63524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

DP
type: SiteQuality
SIO_000300: 1.547055e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.265e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 6717
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43269
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variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011326860841424e-4
allele num: 9888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12424
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 2.246e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.964e0

QD
type: SiteQuality
SIO_000300: 1.166e1

VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.376e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.47e-1

DP
type: SiteQuality
SIO_000300: 1.551908e6

GenotypeQuality
all individuals: 43494
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variant carriers: 0

GenotypeQuality
all individuals: 151
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 547
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variant carriers: 0

GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 187
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variant carriers: 0

GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 1463
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6739
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variant carriers: 0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63840
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.010509296685529e-4
allele num: 9896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.231e1

DP
type: SiteQuality
SIO_000300: 1.558641e6

MQRankSum
type: SiteQuality
SIO_000300: -1.646e0

FS
type: SiteQuality
SIO_000300: 4.489e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43645
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
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variant carriers: 0

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 168
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variant carriers: 0

GenotypeQuality
all individuals: 457
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GenotypeQuality
all individuals: 6752
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GenotypeQuality
all individuals: 1213
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variant carriers: 0

GenotypeQuality
all individuals: 187
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GenotypeQuality
all individuals: 1469
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GenotypeQuality
all individuals: 671
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variant carriers: 1

GenotypeQuality
all individuals: 177
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.009489198465576e-4
allele num: 9906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13086
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.085e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.564586e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

FS
type: SiteQuality
SIO_000300: 6.055e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.728e0

QD
type: SiteQuality
SIO_000300: 1.559e1

GenotypeQuality
all individuals: 6830
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2913
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
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variant carriers: 2

GenotypeQuality
all individuals: 430
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variant carriers: 0

GenotypeQuality
all individuals: 187
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variant carriers: 0

GenotypeQuality
all individuals: 236
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 1225
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GenotypeQuality
all individuals: 44480
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GenotypeQuality
all individuals: 516
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variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.463700234192037e-4
allele num: 13664
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.573677e6

QD
type: SiteQuality
SIO_000300: 8.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

GenotypeQuality
all individuals: 221
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 401
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GenotypeQuality
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GenotypeQuality
all individuals: 187
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GenotypeQuality
all individuals: 392
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GenotypeQuality
all individuals: 1229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.110323162576591e-5
allele num: 64302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13934
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.006238679814852e-4
allele num: 9938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

QD
type: SiteQuality
SIO_000300: 1.482e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.795e-1

FS
type: SiteQuality
SIO_000300: 8.048999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.577606e6

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2442
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 332
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GenotypeQuality
all individuals: 198
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GenotypeQuality
all individuals: 1238
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GenotypeQuality
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GenotypeQuality
all individuals: 522
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GenotypeQuality
all individuals: 140
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GenotypeQuality
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GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5500031000062e-5
allele num: 64516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.58409e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.918e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.91e0

VQSLOD
type: SiteQuality
SIO_000300: -6.309e-1

QD
type: SiteQuality
SIO_000300: 1.746e1

GenotypeQuality
all individuals: 1230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
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GenotypeQuality
all individuals: 2278
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 188
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GenotypeQuality
all individuals: 200
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GenotypeQuality
all individuals: 45347
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GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
all individuals: 156
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variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
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GenotypeQuality
all individuals: 6867
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.003210272873194e-4
allele num: 9968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

DP
type: SiteQuality
SIO_000300: 1.58764e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

FS
type: SiteQuality
SIO_000300: 3.226e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

QD
type: SiteQuality
SIO_000300: 1.182e1

GenotypeQuality
all individuals: 334
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45347
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548083472660846e-5
allele num: 64596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.892748828232699e-5
allele num: 14508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

FS
type: SiteQuality
SIO_000300: 3.226e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

QD
type: SiteQuality
SIO_000300: 1.182e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

DP
type: SiteQuality
SIO_000300: 1.58764e6

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.94e-1

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64842
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15138
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

FS
type: SiteQuality
SIO_000300: 8.622e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.85e-1

QD
type: SiteQuality
SIO_000300: 1.342e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.827e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 1.597154e6

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 257
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539219307966999e-5
allele num: 64968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.525e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.589e0

QD
type: SiteQuality
SIO_000300: 2.581e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.483e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 1.604028e6

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6951
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variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 532
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variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.29e-1

FS
type: SiteQuality
SIO_000300: 2.602e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.943e0

QD
type: SiteQuality
SIO_000300: 1.198e1

VQSLOD
type: SiteQuality
SIO_000300: -1.503e0

DP
type: SiteQuality
SIO_000300: 1.608207e6

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1496
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variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 518
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variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
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variant carriers: 1

GenotypeQuality
all individuals: 180
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 46570
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536995481233285e-5
allele num: 65062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.98e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

DP
type: SiteQuality
SIO_000300: 1.616599e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

QD
type: SiteQuality
SIO_000300: 1.432e1

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 9.75e1
variant carriers: 267

GenotypeQuality
all individuals: 6930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.994011976047904e-4
allele num: 10020
num of homozygotes: 0

South Asian
type: Population
allele count: 262
allele frequency: 1.64738430583501e-2
allele num: 15904
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536995481233285e-5
allele num: 65062
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

QD
type: SiteQuality
SIO_000300: 1.432e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.56e0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 1.616599e6

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6883
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 518
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variant carriers: 0

GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 46390
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.268806419257773e-5
allele num: 15952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.33e-1

QD
type: SiteQuality
SIO_000300: 1.883e1

DP
type: SiteQuality
SIO_000300: 1.604305e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.101e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

GenotypeQuality
all individuals: 394
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.5e0
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GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 8.25e1
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GenotypeQuality
all individuals: 1124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.25e1
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GenotypeQuality
all individuals: 1469
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538366869731093e-5
allele num: 65004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.811250581125058e-4
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

FS
type: SiteQuality
SIO_000300: 3.218e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

DP
type: SiteQuality
SIO_000300: 1.613609e6

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
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GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
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variant carriers: 2

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.994003597841295e-5
allele num: 10006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536239899222663e-5
allele num: 65094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.612917e6

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.28e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.711e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.169031462060457e-5
allele num: 16210
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

FS
type: SiteQuality
SIO_000300: 2.711e0

DP
type: SiteQuality
SIO_000300: 1.612917e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6909
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534354190321294e-5
allele num: 65174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.97e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.333e0

FS
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 1.609641e6

MQRankSum
type: SiteQuality
SIO_000300: -2.251e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.57e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 361
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46759
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 294
allele frequency: 2.935889754343918e-2
allele num: 10014
num of homozygotes: 3

Latino
type: Population
allele count: 7
allele frequency: 6.066909343040389e-4
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.137981831573779e-5
allele num: 16292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.069838833461244e-5
allele num: 65150
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.370786516853933e-3
allele num: 890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 1.623658e6

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.91e-1

FS
type: SiteQuality
SIO_000300: 1.767e0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

QD
type: SiteQuality
SIO_000300: 1.46e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

GenotypeQuality
all individuals: 184
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65210
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.570000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

DP
type: SiteQuality
SIO_000300: 1.606643e6

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 184
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6975
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 1.279e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
SIO_000300: 5.570000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -7.64e-1

DP
type: SiteQuality
SIO_000300: 1.606643e6

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.199349912606176e-5
allele num: 65222
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110975311659741e-5
allele num: 16364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.608406e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.166e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

QD
type: SiteQuality
SIO_000300: 1.309e1

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47762
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 22
allele frequency: 1.906082134811991e-3
allele num: 11542
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.75e-1

DP
type: SiteQuality
SIO_000300: 1.610427e6

QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
all individuals: 135
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7057
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531393568147014e-5
allele num: 65300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 1.229e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.610191e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.68e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.148e1

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7090
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65338
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.363e1

DP
type: SiteQuality
SIO_000300: 1.611725e6

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.275e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 10

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.377073260297448e-4
allele num: 65356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.614182e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.89e-1

FS
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.322880371660859e-4
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-2

QD
type: SiteQuality
SIO_000300: 1.21e1

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 4.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.511e0

MQRankSum
type: SiteQuality
SIO_000300: -7.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.6139e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529847321237341e-5
allele num: 65366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.28e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 4.599e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.529e0

VQSLOD
type: SiteQuality
SIO_000300: -1.222e0

DP
type: SiteQuality
SIO_000300: 1.613588e6

MQRankSum
type: SiteQuality
SIO_000300: -1.72e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 478
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73370319001387e-4
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65338
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.008e0

FS
type: SiteQuality
SIO_000300: 4.048e0

DP
type: SiteQuality
SIO_000300: 1.613667e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.531065315246348e-4
allele num: 65314
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.887284951552304e-5
allele num: 10114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.613803e6

FS
type: SiteQuality
SIO_000300: 1.108e0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.542e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 1.123e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531487380543984e-5
allele num: 65296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.63e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.824e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.165e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.612445e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536617597344725e-5
allele num: 65078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537137235612395e-5
allele num: 65056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.227e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.605e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.43e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

DP
type: SiteQuality
SIO_000300: 1.604837e6

VQSLOD
type: SiteQuality
SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 1.936e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.44e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
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GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64568
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.056343820686819e-4
allele num: 9726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.589125e6

VQSLOD
type: SiteQuality
SIO_000300: -1.931e0

FS
type: SiteQuality
SIO_000300: 1.4231e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.94e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

QD
type: SiteQuality
SIO_000300: 1.231e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.55671098103926e-5
allele num: 64238
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.112e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.961e0

FS
type: SiteQuality
SIO_000300: 6.652e0

DP
type: SiteQuality
SIO_000300: 1.578946e6

VQSLOD
type: SiteQuality
SIO_000300: 2.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6718
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.662729250854834e-4
allele num: 6434
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.554502369668246e-4
allele num: 8440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.678289617315909e-5
allele num: 64126
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.575474e6

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e0

QD
type: SiteQuality
SIO_000300: 1.404e1

FS
type: SiteQuality
SIO_000300: 3.399e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.72e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560598021161709e-5
allele num: 64078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.462e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 1.574319e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.858e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.067691650651292e-4
allele num: 9366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.236e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.562725e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 1.083e0

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.722921914357682e-4
allele num: 6352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.236e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.562725e6

FS
type: SiteQuality
SIO_000300: 1.083e0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.247e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 149
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576541068894845e-5
allele num: 63430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

DP
type: SiteQuality
SIO_000300: 1.555285e6

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.117e0

QD
type: SiteQuality
SIO_000300: 2.845e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6178
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.768868824314873e-5
allele num: 62908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.388e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62880
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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allele frequency: 6.185822095756526e-5
allele num: 16166
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.39e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 106
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GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43018
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.311537490532694e-5
allele num: 15844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 3.093e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 1.507111e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.019e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
type: SiteQuality
SIO_000300: 1.271e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 1036
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1072
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.586104104563173e-4
allele num: 8722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5852
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.195e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 1.454835e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

QD
type: SiteQuality
SIO_000300: 1.487e1

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7330
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.259445843828715e-3
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60278
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.500260010400417e-5
allele num: 15384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10982
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.5e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

FS
type: SiteQuality
SIO_000300: 1.419e0

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

DP
type: SiteQuality
SIO_000300: 1.446185e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5455
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 866
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40793
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.300052002080083e-4
allele num: 15384
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.821161901293025e-4
allele num: 10982
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.303086135421465e-4
allele num: 8684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 127
allele frequency: 2.106904675005807e-3
allele num: 60278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.885498800137127e-3
allele num: 5834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

FS
type: SiteQuality
SIO_000300: 1.419e0

QD
type: SiteQuality
SIO_000300: 1.5e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

DP
type: SiteQuality
SIO_000300: 1.446185e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

GenotypeQuality
all individuals: 502
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4862
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38545
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 796
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.70004420114923e-5
allele num: 58822
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.768e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.385661e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 1.427e1

GenotypeQuality
all individuals: 1303
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4559
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 881
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36421
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.781500067815e-5
allele num: 14746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.348166e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.242e1

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
SIO_000300: -1.214e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.768e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.835e0

GenotypeQuality
all individuals: 205
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35369
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.75266404935502e-5
allele num: 57056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.043e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.61e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.315319e6

QD
type: SiteQuality
SIO_000300: 1.606e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

GenotypeQuality
all individuals: 270
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32376
bin: 6.25e1
variant carriers: 0