2-202700516-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202700516
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202700516
    reference: chr 2
allele count: 200
allele frequency: 1.651527663088357e-3
allele num: 121100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.698+30A>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.874+30A>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.851+30A>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*538+30A>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.851+30A>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.851+30A>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.698+30A>T
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12390
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12047
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 2
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum

2-202700520-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202700520
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202700520
    reference: chr 2
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.851+34T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.851+34T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.698+34T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.874+34T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.851+34T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.698+34T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*538+34T>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6833
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4529
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

2-202700526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202700526
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202700526
    reference: chr 2
allele count: 4
allele frequency: 3.307151715584953e-5
allele num: 120950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.851+40C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.698+40C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.874+40C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.851+40C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*538+40C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.698+40C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.851+40C>T
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9570
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11174
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6590
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5039
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16198
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 25
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

2-202700527-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202700527
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202700527
    reference: chr 2
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.851+41G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.698+41G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.851+41G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*538+41G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.698+41G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.874+41G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.851+41G>A
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5022
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16215
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

2-202700527-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202700527
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202700527
    reference: chr 2
allele count: 38
allele frequency: 3.142157835549381e-4
allele num: 120936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*538+41G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.698+41G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.698+41G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.851+41G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.851+41G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.874+41G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.851+41G>T
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12120
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16215
  bin: 9.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 5022
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

2-202700531-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202700531
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202700530
    reference: chr 2
allele count: 1
allele frequency: 8.274857672448034e-6
allele num: 120848
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.698+47delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.698+47delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.851+47delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.874+47delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*538+47delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.851+47delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.851+47delT
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3338
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16184
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: GT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-202700535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202700535
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202700535
    reference: chr 2
allele count: 2
allele frequency: 1.661046791688122e-5
allele num: 120406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.851+49C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.874+49C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.851+49C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.851+49C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.698+49C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*538+49C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.698+49C>T
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10406
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

2-202712053-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712053
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712053
    reference: chr 2
allele count: 4
allele frequency: 3.310764952242215e-5
allele num: 120818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*539-51G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.699-51G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.852-51G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.852-51G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.875-51G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.699-51G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.852-51G>A
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9849
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3736
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

2-202712053-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712053
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712053
    reference: chr 2
allele count: 8
allele frequency: 6.621529904484431e-5
allele num: 120818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.852-51G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.852-51G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.852-51G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.699-51G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.875-51G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*539-51G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.699-51G>T
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9128
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9849
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4050
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-202712056-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712056
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712056
    reference: chr 2
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.699-48T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.852-48T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.852-48T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.699-48T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.875-48T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*539-48T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.852-48T>G
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10019
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4089
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

2-202712057-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712057
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712057
    reference: chr 2
allele count: 2
allele frequency: 1.65456079683648e-5
allele num: 120878
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.875-47G>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.699-47G>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*539-47G>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.852-47G>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.699-47G>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.852-47G>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.852-47G>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30127
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4041
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/2-202712066-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712066
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712066
    reference: chr 2
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.699-38C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*539-38C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.699-38C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.875-38C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.852-38C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.852-38C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.852-38C>A
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

2-202712071-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712071
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712071
    reference: chr 2
allele count: 2
allele frequency: 1.652319029758266e-5
allele num: 121042
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*539-33A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.699-33A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.852-33A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.699-33A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.852-33A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.852-33A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.875-33A>G
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10669
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4313
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7394
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

2-202712075-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712075
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712075
    reference: chr 2
allele count: 86
allele frequency: 7.102859313830753e-4
allele num: 121078
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.852-29T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*539-29T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.699-29T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.852-29T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.875-29T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.852-29T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.699-29T>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10781
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4323
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7457
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4381
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3984
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30278
  bin: 9.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

2-202712078-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712078
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712078
    reference: chr 2
allele count: 3
allele frequency: 2.477373323644051e-5
allele num: 121096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.699-26C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.852-26C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.852-26C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.699-26C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*539-26C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.875-26C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.852-26C>T
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4379
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-202712090-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712090
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712090
    reference: chr 2
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.852-14A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.699-14A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.852-14A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*539-14A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.852-14A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.699-14A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.875-14A>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10970
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30333
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4037
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-202712095-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712095
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712095
    reference: chr 2
allele count: 121273
allele frequency: 9.989703290004778e-1
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.875-9A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.699-9A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.852-9A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.699-9A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.852-9A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.852-9A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*539-9A>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 8.75e1
  variant carriers: 2870
genotype depth: GenotypeDepth
  all individuals: 12775
  bin: 9.75e1
  variant carriers: 12775
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 8.25e1
  variant carriers: 3491
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 5.75e1
  variant carriers: 4973
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 7.75e1
  variant carriers: 4248
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.25e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 7.25e1
  variant carriers: 4861
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.75e1
  variant carriers: 1886
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.75e1
  variant carriers: 443
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 3.25e1
  variant carriers: 1045
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 5.25e1
  variant carriers: 4583
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 6.25e1
  variant carriers: 5308
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 6.75e1
  variant carriers: 5235
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 9.25e1
  variant carriers: 2089
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 4.75e1
  variant carriers: 3701
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 4.25e1
  variant carriers: 2858
genotype quality: GenotypeQuality
  all individuals: 59507
  bin: 9.75e1
  variant carriers: 59507
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 6.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 6.75e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 60576
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

2-202712104-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712104
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712104
    reference: chr 2
allele count: 8
allele frequency: 6.590220113351786e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.699G>A
  hgvsp: ENSP00000260967.2:p.Trp233Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.852G>A
  hgvsp: ENSP00000412775.1:p.Trp284Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.699G>A
  hgvsp: ENSP00000386901.3:p.Trp233Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.852G>A
  hgvsp: ENSP00000363726.4:p.Trp284Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.875G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*539G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.852G>A
  hgvsp: ENSP00000406472.2:p.Trp284Ter
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7565
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3607
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Trp284Ter
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

2-202712105-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712105
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712105
    reference: chr 2
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*540G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.853G>T
  hgvsp: ENSP00000406472.2:p.Gly285Cys
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.876G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.853G>T
  hgvsp: ENSP00000412775.1:p.Gly285Cys
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.700G>T
  hgvsp: ENSP00000386901.3:p.Gly234Cys
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.700G>T
  hgvsp: ENSP00000260967.2:p.Gly234Cys
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.853G>T
  hgvsp: ENSP00000363726.4:p.Gly285Cys
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly285Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

2-202712106-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712106
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712106
    reference: chr 2
allele count: 4
allele frequency: 3.295055768818887e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.701G>A
  hgvsp: ENSP00000386901.3:p.Gly234Asp
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.854G>A
  hgvsp: ENSP00000363726.4:p.Gly285Asp
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.701G>A
  hgvsp: ENSP00000260967.2:p.Gly234Asp
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*541G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.877G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.854G>A
  hgvsp: ENSP00000406472.2:p.Gly285Asp
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.854G>A
  hgvsp: ENSP00000412775.1:p.Gly285Asp
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8867
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7547
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 32866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly285Asp
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

2-202712115-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712115
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712115
    reference: chr 2
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.710G>T
  hgvsp: ENSP00000386901.3:p.Cys237Phe
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.863G>T
  hgvsp: ENSP00000363726.4:p.Cys288Phe
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.886G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.863G>T
  hgvsp: ENSP00000412775.1:p.Cys288Phe
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.863G>T
  hgvsp: ENSP00000406472.2:p.Cys288Phe
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*550G>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.710G>T
  hgvsp: ENSP00000260967.2:p.Cys237Phe
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8876
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Cys288Phe
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

2-202712127-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712127
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712127
    reference: chr 2
allele count: 108
allele frequency: 8.89635743587209e-4
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.875A>T
  hgvsp: ENSP00000406472.2:p.Glu292Val
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.875A>T
  hgvsp: ENSP00000412775.1:p.Glu292Val
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.722A>T
  hgvsp: ENSP00000386901.3:p.Glu241Val
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*562A>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.722A>T
  hgvsp: ENSP00000260967.2:p.Glu241Val
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.875A>T
  hgvsp: ENSP00000363726.4:p.Glu292Val
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.898A>T
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2676
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8874
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7540
  bin: 9.75e1
  variant carriers: 108
hgvs: p.Glu292Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

2-202712134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712134
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712134
    reference: chr 2
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.882C>T
  hgvsp: ENST00000434439.1:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.905C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.882C>T
  hgvsp: ENST00000450471.2:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.729C>T
  hgvsp: ENST00000260967.2:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.729C>T
  hgvsp: ENST00000410091.3:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.882C>T
  hgvsp: ENST00000374598.4:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*569C>T
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17376
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe294Phe
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

2-202712141-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712141
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712141
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.912C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.736C>T
  hgvsp: ENSP00000386901.3:p.Gln246Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.736C>T
  hgvsp: ENSP00000260967.2:p.Gln246Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.889C>T
  hgvsp: ENSP00000412775.1:p.Gln297Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*576C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.889C>T
  hgvsp: ENSP00000363726.4:p.Gln297Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.889C>T
  hgvsp: ENSP00000406472.2:p.Gln297Ter
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7435
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln297Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

2-202712151-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712151
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712151
    reference: chr 2
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.922T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.746T>C
  hgvsp: ENSP00000386901.3:p.Phe249Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.899T>C
  hgvsp: ENSP00000406472.2:p.Phe300Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.899T>C
  hgvsp: ENSP00000363726.4:p.Phe300Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.899T>C
  hgvsp: ENSP00000412775.1:p.Phe300Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.746T>C
  hgvsp: ENSP00000260967.2:p.Phe249Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*586T>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7435
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Phe300Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ

2-202712159-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712159
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712159
    reference: chr 2
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.907G>A
  hgvsp: ENSP00000363726.4:p.Val303Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.754G>A
  hgvsp: ENSP00000386901.3:p.Val252Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.907G>A
  hgvsp: ENSP00000406472.2:p.Val303Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.930G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.754G>A
  hgvsp: ENSP00000260967.2:p.Val252Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.907G>A
  hgvsp: ENSP00000412775.1:p.Val303Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*594G>A
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33025
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7433
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val303Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-202712164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712164
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712164
    reference: chr 2
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.935C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.912C>T
  hgvsp: ENST00000374598.4:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.912C>T
  hgvsp: ENST00000450471.2:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*599C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.912C>T
  hgvsp: ENST00000434439.1:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.759C>T
  hgvsp: ENST00000410091.3:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.759C>T
  hgvsp: ENST00000260967.2:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33022
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser304Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

2-202712166-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712166
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712166
    reference: chr 2
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.914A>G
  hgvsp: ENSP00000406472.2:p.Asn305Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*601A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.914A>G
  hgvsp: ENSP00000363726.4:p.Asn305Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.914A>G
  hgvsp: ENSP00000412775.1:p.Asn305Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.761A>G
  hgvsp: ENSP00000260967.2:p.Asn254Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.761A>G
  hgvsp: ENSP00000386901.3:p.Asn254Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.937A>G
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7430
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn305Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

2-202712167-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712167
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712167
    reference: chr 2
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.938C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*602C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.915C>T
  hgvsp: ENST00000434439.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.762C>T
  hgvsp: ENST00000410091.3:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.915C>T
  hgvsp: ENST00000374598.4:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.762C>T
  hgvsp: ENST00000260967.2:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.915C>T
  hgvsp: ENST00000450471.2:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33020
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn305Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

2-202712169-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712169
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712169
    reference: chr 2
allele count: 48
allele frequency: 3.954262365307938e-4
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.764T>A
  hgvsp: ENSP00000260967.2:p.Ile255Asn
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.764T>A
  hgvsp: ENSP00000386901.3:p.Ile255Asn
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.917T>A
  hgvsp: ENSP00000412775.1:p.Ile306Asn
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.940T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.917T>A
  hgvsp: ENSP00000406472.2:p.Ile306Asn
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*604T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.917T>A
  hgvsp: ENSP00000363726.4:p.Ile306Asn
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 17366
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8882
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3597
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile306Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

2-202712173-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712173
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712173
    reference: chr 2
allele count: 3
allele frequency: 2.471658317954126e-5
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.921T>C
  hgvsp: ENST00000450471.2:c.921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.768T>C
  hgvsp: ENST00000410091.3:c.768T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.944T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.921T>C
  hgvsp: ENST00000434439.1:c.921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.921T>C
  hgvsp: ENST00000374598.4:c.921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.768T>C
  hgvsp: ENST00000260967.2:c.768T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*608T>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu307Leu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

2-202712193-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712193
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712193
    reference: chr 2
allele count: 6
allele frequency: 4.949025042066713e-5
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*628G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.941G>A
  hgvsp: ENSP00000363726.4:p.Trp314Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.941G>A
  hgvsp: ENSP00000412775.1:p.Trp314Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.941G>A
  hgvsp: ENSP00000406472.2:p.Trp314Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.788G>A
  hgvsp: ENSP00000260967.2:p.Trp263Ter
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.964G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.788G>A
  hgvsp: ENSP00000386901.3:p.Trp263Ter
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32929
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Trp314Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

2-202712201-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712201
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712201
    reference: chr 2
allele count: 121
allele frequency: 9.997521275716765e-4
allele num: 121030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+4G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+4G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+4G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+4G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+4G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+4G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+4G>A
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17217
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 24498
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8790
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 8.25e1
  variant carriers: 0
hgvs: c.945+4G>A
num of homozygotes: 1
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

2-202712204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712204
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712204
    reference: chr 2
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+7G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+7G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+7G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+7G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+7G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+7G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+7G>A
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3567
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 8.25e1
  variant carriers: 0
hgvs: c.945+7G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

2-202712209-ATTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712209
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712206
    reference: chr 2
allele count: 2
allele frequency: 1.658484808279156e-5
allele num: 120592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+17_968+19delTCT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+17_792+19delTCT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+17_945+19delTCT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+17_945+19delTCT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+17_*632+19delTCT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+17_792+19delTCT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+17_945+19delTCT
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7262
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2590
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: ATTC
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

2-202712210-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712210
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712210
    reference: chr 2
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+13T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+13T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+13T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+13T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+13T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+13T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+13T>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16739
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7261
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

2-202712211-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712211
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712211
    reference: chr 2
allele count: 2
allele frequency: 1.65953068472236e-5
allele num: 120516
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+14T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+14T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+14T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+14T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+14T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+14T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+14T>A
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16633
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7262
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-202712214-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712214
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712214
    reference: chr 2
allele count: 1
allele frequency: 8.310479514667997e-6
allele num: 120330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+17T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+17T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+17T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+17T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+17T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+17T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+17T>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

2-202712222-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712222
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712222
    reference: chr 2
allele count: 1
allele frequency: 8.343206127250579e-6
allele num: 119858
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+25A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+25A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+25A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+25A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+25A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+25A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+25A>G
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/2-202712229-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712229
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712229
    reference: chr 2
allele count: 1
allele frequency: 8.378577652657685e-6
allele num: 119352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+32A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+32A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+32A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+32A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+32A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+32A>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+32A>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3280
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-202712231-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712231
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712230
    reference: chr 2
allele count: 1
allele frequency: 8.376612497905846e-6
allele num: 119380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+35delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+35delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+35delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+35delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+35delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+35delT
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+35delT
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: AT
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

2-202712234-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712234
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712235
    reference: chr 2
allele count: 1
allele frequency: 8.408448809363649e-6
allele num: 118928
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+37_792+38insA
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+37_792+38insA
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+37_968+38insA
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+37_945+38insA
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+37_945+38insA
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+37_*632+38insA
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+37_945+38insA
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3212
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-202712236-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712236
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712236
    reference: chr 2
allele count: 1
allele frequency: 8.427297702718647e-6
allele num: 118662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+39C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+39C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+39C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+39C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+39C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+39C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+39C>A
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7230
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3833
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

2-202712239-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712239
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712239
    reference: chr 2
allele count: 1
allele frequency: 8.439958137807636e-6
allele num: 118484
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+42T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+42T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+42T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+42T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+42T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+42T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+42T>G
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11124
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3978
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4613
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

2-202712241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202712241
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202712241
    reference: chr 2
allele count: 1
allele frequency: 8.463100880162492e-6
allele num: 118160
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.945+44T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.968+44T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.792+44T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.792+44T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.945+44T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*632+44T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.945+44T>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11098
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7230
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

2-202719553-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719553
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719553
    reference: chr 2
allele count: 3
allele frequency: 2.484225170169424e-5
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.946-44T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.793-44T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.41T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*633-44T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.71T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.946-44T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.946-44T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.793-44T>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.969-44T>A
  variant of: http://identifiers.org/hgnc/14434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12353
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3804
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4994
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6521
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

2-202719561-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719561
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719561
    reference: chr 2
allele count: 2
allele frequency: 1.653138483410755e-5
allele num: 120982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.793-36C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.49C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.79C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.793-36C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.946-36C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.969-36C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*633-36C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.946-36C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.946-36C>T
  variant of: http://identifiers.org/hgnc/14434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12797
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3923
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

2-202719562-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719562
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719562
    reference: chr 2
allele count: 3
allele frequency: 2.47950277704311e-5
allele num: 120992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.946-35C>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.793-35C>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.793-35C>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.946-35C>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.969-35C>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.50C>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.80C>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.946-35C>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*633-35C>G
  variant of: http://identifiers.org/hgnc/14434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13119
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18220
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

2-202719566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719566
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719566
    reference: chr 2
allele count: 2
allele frequency: 1.65144584083365e-5
allele num: 121106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.54C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.946-31C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.969-31C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*633-31C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.946-31C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.84C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.793-31C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.793-31C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.946-31C>T
  variant of: http://identifiers.org/hgnc/14434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3946
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5975
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18239
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

2-202719574-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719574
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719574
    reference: chr 2
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.946-23T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.969-23T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.946-23T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.946-23T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*633-23T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.793-23T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.92T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.793-23T>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.62T>G
  variant of: http://identifiers.org/hgnc/14434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

2-202719577-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719577
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719577
    reference: chr 2
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.793-20C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*633-20C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.95C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.946-20C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.946-20C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.65C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.793-20C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.946-20C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.969-20C>T
  variant of: http://identifiers.org/hgnc/14434
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18256
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

2-202719588-T-TTTATATAGGTGCTGGGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719588
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719606
    reference: chr 2
allele count: 3
allele frequency: 2.472147142197904e-5
allele num: 121352
alternate allele: TTTATATAGGTGCTGGGAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6965
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6023
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

2-202719589-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719589
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719589
    reference: chr 2
allele count: 2
allele frequency: 1.648125257519571e-5
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.969-8T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.793-8T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.946-8T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*633-8T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.946-8T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.107T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.946-8T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.77T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.793-8T>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6963
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: c.946-8T>C
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS

2-202719593-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719593
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719593
    reference: chr 2
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.969-4A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.793-4A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.946-4A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*633-4A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.111A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.793-4A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.946-4A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.946-4A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.81A>G
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.946-4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

2-202719596-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719596
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719596
    reference: chr 2
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.793-1G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.946-1G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.969-1G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.84G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.114G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*633-1G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.793-1G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.946-1G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.946-1G>A
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6974
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.946-1G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

2-202719597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719597
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719597
    reference: chr 2
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*633G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.793G>A
  hgvsp: ENSP00000386901.3:p.Val265Met
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.946G>A
  hgvsp: ENSP00000412775.1:p.Val316Met
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.85G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.946G>A
  hgvsp: ENSP00000363726.4:p.Val316Met
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.115G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.793G>A
  hgvsp: ENSP00000260967.2:p.Val265Met
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.946G>A
  hgvsp: ENSP00000406472.2:p.Val316Met
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.969G>A
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6975
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val316Met
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

2-202719598-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719598
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719598
    reference: chr 2
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.116T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.794T>C
  hgvsp: ENSP00000260967.2:p.Val265Ala
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.947T>C
  hgvsp: ENSP00000412775.1:p.Val316Ala
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.947T>C
  hgvsp: ENSP00000406472.2:p.Val316Ala
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*634T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.947T>C
  hgvsp: ENSP00000363726.4:p.Val316Ala
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.794T>C
  hgvsp: ENSP00000386901.3:p.Val265Ala
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.970T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.86T>C
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val316Ala
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

2-202719602-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719602
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719602
    reference: chr 2
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.951G>C
  hgvsp: ENST00000374598.4:c.951G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.120G>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.951G>C
  hgvsp: ENST00000434439.1:c.951G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.974G>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*638G>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.90G>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.798G>C
  hgvsp: ENST00000260967.2:c.798G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.951G>C
  hgvsp: ENST00000450471.2:c.951G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.798G>C
  hgvsp: ENST00000410091.3:c.798G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6028
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu317Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-202719609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719609
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719609
    reference: chr 2
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.805C>T
  hgvsp: ENSP00000386901.3:p.Pro269Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*645C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.958C>T
  hgvsp: ENSP00000363726.4:p.Pro320Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.958C>T
  hgvsp: ENSP00000412775.1:p.Pro320Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.127C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.805C>T
  hgvsp: ENSP00000260967.2:p.Pro269Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.958C>T
  hgvsp: ENSP00000406472.2:p.Pro320Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.981C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.97C>T
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13233
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro320Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

2-202719614-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719614
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719614
    reference: chr 2
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.963A>G
  hgvsp: ENST00000450471.2:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.810A>G
  hgvsp: ENST00000410091.3:c.810A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.102A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.963A>G
  hgvsp: ENST00000374598.4:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*650A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.963A>G
  hgvsp: ENST00000434439.1:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.810A>G
  hgvsp: ENST00000260967.2:c.810A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.132A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.986A>G
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6981
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr321Thr
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

2-202719616-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719616
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719616
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.812A>G
  hgvsp: ENSP00000260967.2:p.Glu271Gly
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.104A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.965A>G
  hgvsp: ENSP00000412775.1:p.Glu322Gly
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.965A>G
  hgvsp: ENSP00000363726.4:p.Glu322Gly
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.812A>G
  hgvsp: ENSP00000386901.3:p.Glu271Gly
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.134A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.965A>G
  hgvsp: ENSP00000406472.2:p.Glu322Gly
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.988A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*652A>G
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu322Gly
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

2-202719616-AGGATACTTGGCCG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719616
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719603
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsp: ENSP00000363726.4:p.Asp323GlufsTer42
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsp: ENSP00000406472.2:p.Asp323GlufsTer42
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsp: ENSP00000386901.3:p.Asp272GlufsTer42
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsp: ENSP00000260967.2:p.Asp272GlufsTer42
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsp: ENSP00000412775.1:p.Asp323GlufsTer42
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp323GlufsTer42
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: AGGATACTTGGCCG
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

2-202719621-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719621
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719621
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.970A>G
  hgvsp: ENSP00000363726.4:p.Thr324Ala
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.817A>G
  hgvsp: ENSP00000260967.2:p.Thr273Ala
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*657A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.993A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.970A>G
  hgvsp: ENSP00000412775.1:p.Thr324Ala
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.109A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.970A>G
  hgvsp: ENSP00000406472.2:p.Thr324Ala
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.817A>G
  hgvsp: ENSP00000386901.3:p.Thr273Ala
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.139A>G
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr324Ala
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

2-202719622-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719622
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719622
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.994C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.818C>T
  hgvsp: ENSP00000386901.3:p.Thr273Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.818C>T
  hgvsp: ENSP00000260967.2:p.Thr273Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.110C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.971C>T
  hgvsp: ENSP00000412775.1:p.Thr324Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*658C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.971C>T
  hgvsp: ENSP00000406472.2:p.Thr324Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.971C>T
  hgvsp: ENSP00000363726.4:p.Thr324Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.140C>T
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18271
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr324Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

2-202719623-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719623
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719623
    reference: chr 2
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.819T>C
  hgvsp: ENST00000260967.2:c.819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*659T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.972T>C
  hgvsp: ENST00000434439.1:c.972T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.141T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.995T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.972T>C
  hgvsp: ENST00000374598.4:c.972T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.111T>C
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.819T>C
  hgvsp: ENST00000410091.3:c.819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.972T>C
  hgvsp: ENST00000450471.2:c.972T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr324Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

2-202719628-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719628
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719628
    reference: chr 2
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.146C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.977C>T
  hgvsp: ENSP00000406472.2:p.Pro326Leu
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.1000C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*664C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.977C>T
  hgvsp: ENSP00000363726.4:p.Pro326Leu
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.824C>T
  hgvsp: ENSP00000260967.2:p.Pro275Leu
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.116C>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.977C>T
  hgvsp: ENSP00000412775.1:p.Pro326Leu
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.824C>T
  hgvsp: ENSP00000386901.3:p.Pro275Leu
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro326Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

2-202719629-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719629
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719629
    reference: chr 2
allele count: 6
allele frequency: 4.942420797706717e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*665G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.1001G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.978G>A
  hgvsp: ENST00000374598.4:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.117G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.147G>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.825G>A
  hgvsp: ENST00000260967.2:c.825G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.978G>A
  hgvsp: ENST00000450471.2:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.978G>A
  hgvsp: ENST00000434439.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.825G>A
  hgvsp: ENST00000410091.3:c.825G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6031
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro326Pro
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-202719635-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719635
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719635
    reference: chr 2
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.1007C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.831C>A
  hgvsp: ENST00000410091.3:c.831C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.984C>A
  hgvsp: ENST00000374598.4:c.984C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*671C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.153C>A
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.831C>A
  hgvsp: ENST00000260967.2:c.831C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.984C>A
  hgvsp: ENST00000450471.2:c.984C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.984C>A
  hgvsp: ENST00000434439.1:c.984C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.123C>A
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18276
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val328Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

2-202719650-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719650
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719650
    reference: chr 2
allele count: 67
allele frequency: 5.51940028008897e-4
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.1022C>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.138C>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*686C>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.999C>G
  hgvsp: ENSP00000363726.4:p.Asn333Lys
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.999C>G
  hgvsp: ENSP00000412775.1:p.Asn333Lys
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.999C>G
  hgvsp: ENSP00000406472.2:p.Asn333Lys
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.846C>G
  hgvsp: ENSP00000386901.3:p.Asn282Lys
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.846C>G
  hgvsp: ENSP00000260967.2:p.Asn282Lys
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.168C>G
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 18333
  bin: 9.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 3957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6019
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn333Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

2-202719655-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719655
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719655
    reference: chr 2
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.851A>G
  hgvsp: ENSP00000386901.3:p.Asn284Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*691A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.173A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.1004A>G
  hgvsp: ENSP00000363726.4:p.Asn335Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.143A>G
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.851A>G
  hgvsp: ENSP00000260967.2:p.Asn284Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.1004A>G
  hgvsp: ENSP00000406472.2:p.Asn335Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.1004A>G
  hgvsp: ENSP00000412775.1:p.Asn335Ser
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.1027A>G
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5289
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn335Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

2-202719655-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 202719655
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 202719655
    reference: chr 2
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000488419
  gene symbol: CDK15
  hgvsc: ENST00000488419.1:n.1027A>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000466337
  gene symbol: CDK15
  hgvsc: ENST00000466337.1:n.143A>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000386901
  ensembl transcript: ENST00000410091
  gene symbol: CDK15
  hgvsc: ENST00000410091.3:c.851A>T
  hgvsp: ENSP00000386901.3:p.Asn284Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000389831
  ensembl transcript: ENST00000451080
  gene symbol: CDK15
  hgvsc: ENST00000451080.1:c.*691A>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000363726
  ensembl transcript: ENST00000374598
  gene symbol: CDK15
  hgvsc: ENST00000374598.4:c.1004A>T
  hgvsp: ENSP00000363726.4:p.Asn335Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000260967
  ensembl transcript: ENST00000260967
  gene symbol: CDK15
  hgvsc: ENST00000260967.2:c.851A>T
  hgvsp: ENSP00000260967.2:p.Asn284Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138395
  ensembl transcript: ENST00000460149
  gene symbol: CDK15
  hgvsc: ENST00000460149.1:n.173A>T
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000412775
  ensembl transcript: ENST00000434439
  gene symbol: CDK15
  hgvsc: ENST00000434439.1:c.1004A>T
  hgvsp: ENSP00000412775.1:p.Asn335Ile
  variant of: http://identifiers.org/hgnc/14434
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138395
  ensembl protein: ENSP00000406472
  ensembl transcript: ENST00000450471
  gene symbol: CDK15
  hgvsc: ENST00000450471.2:c.1004A>T
  hgvsp: ENSP00000406472.2:p.Asn335Ile
  variant of: http://identifiers.org/hgnc/14434
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn335Ile
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 5073
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6866
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16337
bin: 9.75e1
variant carriers: 198

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 198
allele frequency: 1.904578684109273e-2
allele num: 10396
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.64e-2

DP
type: SiteQuality
SIO_000300: 2.200017e6

QD
type: SiteQuality
SIO_000300: 1.332e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
all individuals: 530
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3574
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16196
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 341
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

FS
type: SiteQuality
SIO_000300: 1.684e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.189541e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.487e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4521
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.448579823702253e-4
allele num: 16336
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.431e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

DP
type: SiteQuality
SIO_000300: 2.176529e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-1

DP
type: SiteQuality
SIO_000300: 2.174584e6

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.808e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.604166666666667e-4
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 35
allele frequency: 3.372518789747543e-3
allele num: 10378
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-1

DP
type: SiteQuality
SIO_000300: 2.174584e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.808e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5007
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GenotypeQuality
all individuals: 4511
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128201985537444e-5
allele num: 16318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.81e-2

MQ
type: SiteQuality
SIO_000300: 6.049e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.18e-1

DP
type: SiteQuality
SIO_000300: 2.163787e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.49e-1

QD
type: SiteQuality
SIO_000300: 2.455e1

GenotypeQuality
all individuals: 1403
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9364
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.236705416769726e-4
allele num: 16172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.515000000000001e0

QD
type: SiteQuality
SIO_000300: 9.029999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.967e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

DP
type: SiteQuality
SIO_000300: 2.15344e6

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.490807540144287e-4
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

DP
type: SiteQuality
SIO_000300: 2.639503e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.052e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 8
allele frequency: 7.707129094412332e-4
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.639503e6

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.052e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505208019748329e-5
allele num: 66436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 3.274e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

DP
type: SiteQuality
SIO_000300: 2.646445e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.36e1

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4068
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.325581395348837e-4
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.62e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.014e1

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-2

FS
type: SiteQuality
SIO_000300: 4.234e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

DP
type: SiteQuality
SIO_000300: 2.648746e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 399
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variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30186
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 129
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GenotypeQuality
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GenotypeQuality
all individuals: 4273
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variant carriers: 0

GenotypeQuality
all individuals: 4226
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 5.957e1

MQRankSum
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FS
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SIO_000300: 9.76e-1

ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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SIO_000300: -2.647e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
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allele frequency: 1.215953307392996e-4
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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MQ
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SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 2.672157e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 79
allele frequency: 7.602001539645882e-3
allele num: 10392
num of homozygotes: 0

Latino
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allele frequency: 6.069013351829374e-4
allele num: 11534
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 8.080000000000001e-1

InbreedingCoeff
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SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 2.678143e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 185
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.475440222428174e-4
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.681081e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

FS
type: SiteQuality
SIO_000300: 1.494e0

QD
type: SiteQuality
SIO_000300: 1.222e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.874e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.03e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 21
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.225e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

QD
type: SiteQuality
SIO_000300: 1.487e1

VQSLOD
type: SiteQuality
SIO_000300: 5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.686918e6

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
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variant carriers: 335

GenotypeQuality
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variant carriers: 31

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 135

GenotypeQuality
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variant carriers: 119

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 33

European (Non-Finnish)
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allele count: 66736
allele frequency: 1.0e0
allele num: 66736
num of homozygotes: 33368

South Asian
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allele count: 16507
allele frequency: 9.999394233099104e-1
allele num: 16508
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East Asian
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allele count: 8654
allele frequency: 1.0e0
allele num: 8654
num of homozygotes: 4327

African
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allele count: 10290
allele frequency: 9.888525850470882e-1
allele num: 10406
num of homozygotes: 5088

Latino
type: Population
allele count: 11564
allele frequency: 9.993086761147598e-1
allele num: 11572
num of homozygotes: 5779

Other
type: Population
allele count: 908
allele frequency: 1.0e0
allele num: 908
num of homozygotes: 454

European (Finnish)
type: Population
allele count: 6614
allele frequency: 1.0e0
allele num: 6614
num of homozygotes: 3307

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

QD
type: SiteQuality
SIO_000300: 3.349e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.96e-2

DP
type: SiteQuality
SIO_000300: 4.913706e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 8.991727610598249e-5
allele num: 66728
num of homozygotes: 0

East Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

MQRankSum
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DP
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MQ
type: SiteQuality
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

African
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
type: Population
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num of homozygotes: 0

DP
type: SiteQuality
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.997152704930316e-5
allele num: 66730
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQ
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

MQRankSum
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ReadPosRankSum
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SIO_000300: 2.21e0

VQSLOD
type: SiteQuality
SIO_000300: -2.753e0

FS
type: SiteQuality
SIO_000300: 1.034e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 2.0885e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.175e0

QD
type: SiteQuality
SIO_000300: 2.111e1

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1502
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 42
allele frequency: 6.350166313879649e-3
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.405286343612335e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.91323885240235e-4
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 3.746328597973985e-4
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 1.453488372093023e-3
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.541e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

DP
type: SiteQuality
SIO_000300: 2.091128e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

QD
type: SiteQuality
SIO_000300: 1.267e1

VQSLOD
type: SiteQuality
SIO_000300: 4.62e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 2680
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1036
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495594317568783e-5
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 4.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

DP
type: SiteQuality
SIO_000300: 2.084188e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.722e0

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.458e0

FS
type: SiteQuality
SIO_000300: 5.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

VQSLOD
type: SiteQuality
SIO_000300: 4.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.26e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

DP
type: SiteQuality
SIO_000300: 2.083891e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2507
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.422e1

DP
type: SiteQuality
SIO_000300: 2.08383e6

FS
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 8886
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2507
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.083704e6

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.102e1

MQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 9.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.257e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 7432
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997332374186974e-5
allele num: 66726
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.192e0

VQSLOD
type: SiteQuality
SIO_000300: -1.102e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 2.083612e6

FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
SIO_000300: 1.05e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997332374186974e-5
allele num: 66726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.282e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.81e-1

FS
type: SiteQuality
SIO_000300: 5.07e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.903e1

DP
type: SiteQuality
SIO_000300: 2.083386e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.081e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.083308e6

VQSLOD
type: SiteQuality
SIO_000300: 2.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.22e-1

FS
type: SiteQuality
SIO_000300: 3.288e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.089e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 48

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.559721802237678e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 43
allele frequency: 6.444264604501994e-4
allele num: 66726
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.084174e6

QD
type: SiteQuality
SIO_000300: 1.217e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.1e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.009e0

DP
type: SiteQuality
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QD
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BaseQRankSum
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SIO_000300: -1.609e0

MQ
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SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
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East Asian
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allele count: 6
allele frequency: 6.936416184971098e-4
allele num: 8650
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11544
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South Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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DP
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InbreedingCoeff
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SIO_000300: -2.0e-4

FS
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.924e1

BaseQRankSum
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SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

QD
type: SiteQuality
SIO_000300: 1.208e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.605523710265763e-4
allele num: 11514
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

African
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allele count: 116
allele frequency: 1.120772946859903e-2
allele num: 10350
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

QD
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MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

DP
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SIO_000300: 2.070952e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503623733197005e-5
allele num: 66506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.816e1

FS
type: SiteQuality
SIO_000300: 1.632e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -2.098e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.665e0

DP
type: SiteQuality
SIO_000300: 2.061719e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014136299243452e-5
allele num: 66354
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8548
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16432
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

FS
type: SiteQuality
SIO_000300: 2.967e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 2.043687e6

MQRankSum
type: SiteQuality
SIO_000300: -1.478e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 5.65e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.772e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507295309296997e-5
allele num: 66344
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11480
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16430
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African
type: Population
allele count: 0
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allele num: 10286
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MQ
type: SiteQuality
SIO_000300: 5.859e1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.05e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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African
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.016682252858306e-5
allele num: 66298
num of homozygotes: 0

South Asian
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MQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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FS
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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allele num: 10260
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66210
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8522
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

Other
type: Population
allele count: 0
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VQSLOD
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele num: 65944
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Other
type: Population
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East Asian
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European (Finnish)
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allele num: 6580
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MQ
type: SiteQuality
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BaseQRankSum
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QD
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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type: Population
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African
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East Asian
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European (Non-Finnish)
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allele frequency: 1.523368472366096e-5
allele num: 65644
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

South Asian
type: Population
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 2.0198e1

InbreedingCoeff
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BaseQRankSum
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SIO_000300: -3.55e-1

ClippingRankSum
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QD
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.523136442562525e-5
allele num: 65654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8374
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: 9.63e-1

DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.529145513487063e-5
allele num: 65396
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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MQ
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.533224985434363e-5
allele num: 65222
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
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DP
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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SIO_000300: -2.354e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.2588e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.16294835449279e-5
allele num: 16226
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65130
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8238
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

BaseQRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.786556e6

FS
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.169792694965449e-5
allele num: 16208
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64906
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DP
type: SiteQuality
SIO_000300: 1.769246e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66384
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European (Finnish)
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South Asian
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BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66512
num of homozygotes: 0

South Asian
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African
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East Asian
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European (Finnish)
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Other
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Latino
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VQSLOD
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ClippingRankSum
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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allele num: 66522
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Other
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African
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European (Finnish)
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Latino
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BaseQRankSum
type: SiteQuality
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MQ
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ReadPosRankSum
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QD
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FS
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Latino
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allele num: 11556
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European (Finnish)
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Other
type: Population
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South Asian
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allele num: 16486
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VQSLOD
type: SiteQuality
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QD
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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DP
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BaseQRankSum
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SIO_000300: -4.788e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.19e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e0

MQRankSum
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SIO_000300: -1.391e0

QD
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SIO_000300: 1.354e1

ReadPosRankSum
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SIO_000300: -9.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -4.365e-1

InbreedingCoeff
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SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

DP
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SIO_000300: 2.208927e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.288e0

FS
type: SiteQuality
SIO_000300: 1.495e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.046e1

MQRankSum
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SIO_000300: -1.174e0

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

DP
type: SiteQuality
SIO_000300: 2.210173e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.15e1

DP
type: SiteQuality
SIO_000300: 2.211725e6

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.938e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 2.477e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e0

QD
type: SiteQuality
SIO_000300: 1.606e1

VQSLOD
type: SiteQuality
SIO_000300: -1.418e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.211955e6

FS
type: SiteQuality
SIO_000300: 3.182e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
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MQ
type: SiteQuality
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QD
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ReadPosRankSum
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MQRankSum
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DP
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ClippingRankSum
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SIO_000300: -8.34e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

African
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Other
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InbreedingCoeff
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QD
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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DP
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MQ
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

European (Finnish)
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African
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South Asian
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Other
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FS
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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Latino
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European (Non-Finnish)
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Other
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South Asian
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allele frequency: 6.056935190793458e-5
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European (Finnish)
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DP
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InbreedingCoeff
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MQ
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QD
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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East Asian
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South Asian
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InbreedingCoeff
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DP
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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QD
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ClippingRankSum
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DP
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FS
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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QD
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ReadPosRankSum
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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Other
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African
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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African
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VQSLOD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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Latino
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East Asian
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DP
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VQSLOD
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MQ
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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African
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East Asian
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Latino
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European (Finnish)
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.141e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.91e-1

DP
type: SiteQuality
SIO_000300: 2.212922e6

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

FS
type: SiteQuality
SIO_000300: 5.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

VQSLOD
type: SiteQuality
SIO_000300: 7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
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SIO_000300: 2.213261e6

BaseQRankSum
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SIO_000300: 4.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.56e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

QD
type: SiteQuality
SIO_000300: 9.15e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

BaseQRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
SIO_000300: 5.81e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 67
allele frequency: 4.058146577831617e-3
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.082e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.142e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.45e-2

QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.581e0

QD
type: SiteQuality
SIO_000300: 1.256e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.212938e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 5.919e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0