2-11944702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11944702
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11944702
    reference: chr 2
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2180+5G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2309+5G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2072+5G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.132+5G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1244+5G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.557+5G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2054+5G>A
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8427
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 7.25e1
  variant carriers: 0
hgvs: c.2309+5G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

2-11944712-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11944712
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11944712
    reference: chr 2
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2054+15C>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.132+15C>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.557+15C>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2180+15C>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2309+15C>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1244+15C>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2072+15C>G
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11901
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3987
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

2-11944714-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11944714
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11944714
    reference: chr 2
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1244+17T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2072+17T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2309+17T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.557+17T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.132+17T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2054+17T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2180+17T>G
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5036
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

2-11944718-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11944718
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11944718
    reference: chr 2
allele count: 22
allele frequency: 1.812220959159129e-4
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.557+21G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1244+21G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.132+21G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2309+21G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2180+21G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2072+21G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2054+21G>A
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11873
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

2-11944723-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11944723
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11944723
    reference: chr 2
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.557+26T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1244+26T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2309+26T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2180+26T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.132+26T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2054+26T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2072+26T>C
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11862
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5023
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

2-11944736-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11944736
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11944736
    reference: chr 2
allele count: 496
allele frequency: 4.095315157620094e-3
allele num: 121114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2180+39T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2072+39T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2054+39T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2309+39T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.557+39T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1244+39T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.132+39T>C
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 5.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 4.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 6.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 4.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11220
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 5.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 12138
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15432
  bin: 9.75e1
  variant carriers: 482
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 12
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

2-11944744-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11944744
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11944744
    reference: chr 2
allele count: 11
allele frequency: 9.535863515786188e-5
allele num: 115354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2054+47C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2180+47C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2072+47C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.132+47C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.557+47C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1244+47C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2309+47C>T
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10832
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14961
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 9398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5817
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4685
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

2-11944745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11944745
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11944745
    reference: chr 2
allele count: 2
allele frequency: 1.734154166305385e-5
allele num: 115330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.132+48G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1244+48G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2180+48G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2054+48G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2309+48G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2072+48G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.557+48G>A
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2446
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14955
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4691
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

2-11944745-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11944745
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11944745
    reference: chr 2
allele count: 1
allele frequency: 8.670770831526923e-6
allele num: 115330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2072+48G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2180+48G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2054+48G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2309+48G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.132+48G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1244+48G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.557+48G>T
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8808
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3891
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9021
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-11944746-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11944746
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11944745
    reference: chr 2
allele count: 23305
allele frequency: 1.924251932095911e-1
allele num: 121112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.557+54delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.132+54delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2309+54delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2054+54delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1244+54delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2072+54delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2180+54delG
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 509
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 6.25e1
  variant carriers: 828
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 6.75e1
  variant carriers: 659
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 4.25e1
  variant carriers: 2916
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 2.25e1
  variant carriers: 1027
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.75e1
  variant carriers: 410
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.75e1
  variant carriers: 1172
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 5.25e1
  variant carriers: 1670
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.75e1
  variant carriers: 412
genotype depth: GenotypeDepth
  all individuals: 10931
  bin: 3.25e1
  variant carriers: 2789
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 2.75e1
  variant carriers: 1934
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.25e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 3.75e1
  variant carriers: 3018
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 4.75e1
  variant carriers: 2281
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 7.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 5.75e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2629
  bin: 9.25e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 33121
  bin: 9.75e1
  variant carriers: 19770
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 5.25e1
  variant carriers: 31
num of homozygotes: 2703
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: TG
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

2-11945160-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945160
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945160
    reference: chr 2
allele count: 1
allele frequency: 8.58619682997613e-6
allele num: 116466
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2055-36T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.558-36T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2310-36T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1245-36T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.133-36T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2073-36T>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2181-36T>G
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29880
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-11945166-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945166
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945166
    reference: chr 2
allele count: 1
allele frequency: 8.502967535669949e-6
allele num: 117606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2181-30C>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2310-30C>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.133-30C>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2073-30C>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.558-30C>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2055-30C>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1245-30C>A
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8480
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35095
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

2-11945184-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945184
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945184
    reference: chr 2
allele count: 1
allele frequency: 8.274036074797286e-6
allele num: 120860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.558-12C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2181-12C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1245-12C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2055-12C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2073-12C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2310-12C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.133-12C>T
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8527
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40486
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

2-11945186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945186
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945186
    reference: chr 2
allele count: 31
allele frequency: 2.562534098235985e-4
allele num: 120974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2073-10C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2310-10C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2181-10C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2055-10C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.558-10C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1245-10C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.133-10C>T
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12811
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40556
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

2-11945196-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945196
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945196
    reference: chr 2
allele count: 8
allele frequency: 6.598046978094485e-5
allele num: 121248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2181A>G
  hgvsp: ENST00000396099.1:c.2181A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2310A>G
  hgvsp: ENST00000449576.2:c.2310A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.558A>G
  hgvsp: ENST00000404113.2:c.558A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2073A>G
  hgvsp: ENST00000425416.2:c.2073A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.133A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1245A>G
  hgvsp: ENST00000396097.1:c.1245A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2055A>G
  hgvsp: ENST00000256720.2:c.2055A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34985
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2310A>G
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

2-11945201-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945201
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945201
    reference: chr 2
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2060A>G
  hgvsp: ENSP00000256720.2:p.Asp687Gly
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.563A>G
  hgvsp: ENSP00000386120.2:p.Asp188Gly
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1250A>G
  hgvsp: ENSP00000379404.1:p.Asp417Gly
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2078A>G
  hgvsp: ENSP00000401522.2:p.Asp693Gly
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.138A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2186A>G
  hgvsp: ENSP00000379406.1:p.Asp729Gly
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2315A>G
  hgvsp: ENSP00000397908.2:p.Asp772Gly
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5968
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp772Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP

2-11945205-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945205
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945205
    reference: chr 2
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1254T>C
  hgvsp: ENST00000396097.1:c.1254T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2190T>C
  hgvsp: ENST00000396099.1:c.2190T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2082T>C
  hgvsp: ENST00000425416.2:c.2082T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.567T>C
  hgvsp: ENST00000404113.2:c.567T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2319T>C
  hgvsp: ENST00000449576.2:c.2319T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.142T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2064T>C
  hgvsp: ENST00000256720.2:c.2064T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8531
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr773Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-11945222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945222
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945222
    reference: chr 2
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.584C>T
  hgvsp: ENSP00000386120.2:p.Pro195Leu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1271C>T
  hgvsp: ENSP00000379404.1:p.Pro424Leu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2336C>T
  hgvsp: ENSP00000397908.2:p.Pro779Leu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2081C>T
  hgvsp: ENSP00000256720.2:p.Pro694Leu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2099C>T
  hgvsp: ENSP00000401522.2:p.Pro700Leu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.159C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2207C>T
  hgvsp: ENSP00000379406.1:p.Pro736Leu
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro779Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

2-11945224-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945224
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945224
    reference: chr 2
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.161A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.586A>G
  hgvsp: ENSP00000386120.2:p.Thr196Ala
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1273A>G
  hgvsp: ENSP00000379404.1:p.Thr425Ala
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2083A>G
  hgvsp: ENSP00000256720.2:p.Thr695Ala
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2338A>G
  hgvsp: ENSP00000397908.2:p.Thr780Ala
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2101A>G
  hgvsp: ENSP00000401522.2:p.Thr701Ala
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2209A>G
  hgvsp: ENSP00000379406.1:p.Thr737Ala
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5974
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr780Ala
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-11945225-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945225
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945225
    reference: chr 2
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2102C>A
  hgvsp: ENSP00000401522.2:p.Thr701Asn
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2339C>A
  hgvsp: ENSP00000397908.2:p.Thr780Asn
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1274C>A
  hgvsp: ENSP00000379404.1:p.Thr425Asn
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.587C>A
  hgvsp: ENSP00000386120.2:p.Thr196Asn
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2210C>A
  hgvsp: ENSP00000379406.1:p.Thr737Asn
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2084C>A
  hgvsp: ENSP00000256720.2:p.Thr695Asn
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.162C>A
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8536
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr780Asn
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

2-11945235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945235
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945235
    reference: chr 2
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2220G>A
  hgvsp: ENST00000396099.1:c.2220G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2349G>A
  hgvsp: ENST00000449576.2:c.2349G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.597G>A
  hgvsp: ENST00000404113.2:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1284G>A
  hgvsp: ENST00000396097.1:c.1284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2112G>A
  hgvsp: ENST00000425416.2:c.2112G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2094G>A
  hgvsp: ENST00000256720.2:c.2094G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.172G>A
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8535
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys783Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

2-11945236-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945236
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945236
    reference: chr 2
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2350G>C
  hgvsp: ENSP00000397908.2:p.Asp784His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2221G>C
  hgvsp: ENSP00000379406.1:p.Asp741His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.173G>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1285G>C
  hgvsp: ENSP00000379404.1:p.Asp429His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2113G>C
  hgvsp: ENSP00000401522.2:p.Asp705His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.598G>C
  hgvsp: ENSP00000386120.2:p.Asp200His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2095G>C
  hgvsp: ENSP00000256720.2:p.Asp699His
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp784His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

2-11945250-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945250
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945250
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2235G>A
  hgvsp: ENST00000396099.1:c.2235G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2364G>A
  hgvsp: ENST00000449576.2:c.2364G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2109G>A
  hgvsp: ENST00000256720.2:c.2109G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2127G>A
  hgvsp: ENST00000425416.2:c.2127G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.612G>A
  hgvsp: ENST00000404113.2:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1299G>A
  hgvsp: ENST00000396097.1:c.1299G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.187G>A
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln788Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

2-11945250-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945250
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945250
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.612G>C
  hgvsp: ENSP00000386120.2:p.Gln204His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1299G>C
  hgvsp: ENSP00000379404.1:p.Gln433His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2235G>C
  hgvsp: ENSP00000379406.1:p.Gln745His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2364G>C
  hgvsp: ENSP00000397908.2:p.Gln788His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2109G>C
  hgvsp: ENSP00000256720.2:p.Gln703His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2127G>C
  hgvsp: ENSP00000401522.2:p.Gln709His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.187G>C
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln788His
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

2-11945251-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945251
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945251
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1300G>T
  hgvsp: ENSP00000379404.1:p.Gly434Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2110G>T
  hgvsp: ENSP00000256720.2:p.Gly704Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2365G>T
  hgvsp: ENSP00000397908.2:p.Gly789Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.613G>T
  hgvsp: ENSP00000386120.2:p.Gly205Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2236G>T
  hgvsp: ENSP00000379406.1:p.Gly746Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2128G>T
  hgvsp: ENSP00000401522.2:p.Gly710Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.188G>T
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5979
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40698
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly789Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

2-11945252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945252
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945252
    reference: chr 2
allele count: 13
allele frequency: 1.071210797804842e-4
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2366G>A
  hgvsp: ENSP00000397908.2:p.Gly789Asp
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2237G>A
  hgvsp: ENSP00000379406.1:p.Gly746Asp
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.189G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1301G>A
  hgvsp: ENSP00000379404.1:p.Gly434Asp
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2129G>A
  hgvsp: ENSP00000401522.2:p.Gly710Asp
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2111G>A
  hgvsp: ENSP00000256720.2:p.Gly704Asp
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.614G>A
  hgvsp: ENSP00000386120.2:p.Gly205Asp
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13044
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8546
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly789Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

2-11945254-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945254
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945254
    reference: chr 2
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.191A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.616A>G
  hgvsp: ENSP00000386120.2:p.Ile206Val
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2131A>G
  hgvsp: ENSP00000401522.2:p.Ile711Val
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1303A>G
  hgvsp: ENSP00000379404.1:p.Ile435Val
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2239A>G
  hgvsp: ENSP00000379406.1:p.Ile747Val
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2113A>G
  hgvsp: ENSP00000256720.2:p.Ile705Val
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2368A>G
  hgvsp: ENSP00000397908.2:p.Ile790Val
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40671
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile790Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ

2-11945256-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945256
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945256
    reference: chr 2
allele count: 8
allele frequency: 6.592827004219409e-5
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2370C>T
  hgvsp: ENST00000449576.2:c.2370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.618C>T
  hgvsp: ENST00000404113.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.193C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2115C>T
  hgvsp: ENST00000256720.2:c.2115C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2133C>T
  hgvsp: ENST00000425416.2:c.2133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2241C>T
  hgvsp: ENST00000396099.1:c.2241C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1305C>T
  hgvsp: ENST00000396097.1:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34738
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile790Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

2-11945257-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945257
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945257
    reference: chr 2
allele count: 3
allele frequency: 2.47255464345762e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2242G>A
  hgvsp: ENSP00000379406.1:p.Ala748Thr
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.619G>A
  hgvsp: ENSP00000386120.2:p.Ala207Thr
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2371G>A
  hgvsp: ENSP00000397908.2:p.Ala791Thr
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2116G>A
  hgvsp: ENSP00000256720.2:p.Ala706Thr
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1306G>A
  hgvsp: ENSP00000379404.1:p.Ala436Thr
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.194G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2134G>A
  hgvsp: ENSP00000401522.2:p.Ala712Thr
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala791Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

2-11945260-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945260
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945260
    reference: chr 2
allele count: 5
allele frequency: 4.121196135966503e-5
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1309A>G
  hgvsp: ENSP00000379404.1:p.Lys437Glu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.197A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2119A>G
  hgvsp: ENSP00000256720.2:p.Lys707Glu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2245A>G
  hgvsp: ENSP00000379406.1:p.Lys749Glu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2137A>G
  hgvsp: ENSP00000401522.2:p.Lys713Glu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2374A>G
  hgvsp: ENSP00000397908.2:p.Lys792Glu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.622A>G
  hgvsp: ENSP00000386120.2:p.Lys208Glu
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5965
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40529
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys792Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-11945262-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945262
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945262
    reference: chr 2
allele count: 10
allele frequency: 8.242528148233626e-5
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1311G>A
  hgvsp: ENST00000396097.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2376G>A
  hgvsp: ENST00000449576.2:c.2376G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2139G>A
  hgvsp: ENST00000425416.2:c.2139G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.624G>A
  hgvsp: ENST00000404113.2:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2247G>A
  hgvsp: ENST00000396099.1:c.2247G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2121G>A
  hgvsp: ENST00000256720.2:c.2121G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.199G>A
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys792Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

2-11945267-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945267
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945267
    reference: chr 2
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1316A>G
  hgvsp: ENSP00000379404.1:p.Tyr439Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2381A>G
  hgvsp: ENSP00000397908.2:p.Tyr794Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.204A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.629A>G
  hgvsp: ENSP00000386120.2:p.Tyr210Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2144A>G
  hgvsp: ENSP00000401522.2:p.Tyr715Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2252A>G
  hgvsp: ENSP00000379406.1:p.Tyr751Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2126A>G
  hgvsp: ENSP00000256720.2:p.Tyr709Cys
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr794Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

2-11945275-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945275
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945275
    reference: chr 2
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.212G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2152G>T
  hgvsp: ENSP00000401522.2:p.Val718Leu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1324G>T
  hgvsp: ENSP00000379404.1:p.Val442Leu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2389G>T
  hgvsp: ENSP00000397908.2:p.Val797Leu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.637G>T
  hgvsp: ENSP00000386120.2:p.Val213Leu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2260G>T
  hgvsp: ENSP00000379406.1:p.Val754Leu
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2134G>T
  hgvsp: ENSP00000256720.2:p.Val712Leu
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val797Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD

2-11945277-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945277
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945277
    reference: chr 2
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.639G>A
  hgvsp: ENST00000404113.2:c.639G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2391G>A
  hgvsp: ENST00000449576.2:c.2391G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2154G>A
  hgvsp: ENST00000425416.2:c.2154G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2136G>A
  hgvsp: ENST00000256720.2:c.2136G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.214G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1326G>A
  hgvsp: ENST00000396097.1:c.1326G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2262G>A
  hgvsp: ENST00000396099.1:c.2262G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val797Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-11945277-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945277
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945277
    reference: chr 2
allele count: 4
allele frequency: 3.301038176506511e-5
allele num: 121174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2154G>T
  hgvsp: ENST00000425416.2:c.2154G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.214G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.639G>T
  hgvsp: ENST00000404113.2:c.639G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2391G>T
  hgvsp: ENST00000449576.2:c.2391G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2262G>T
  hgvsp: ENST00000396099.1:c.2262G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1326G>T
  hgvsp: ENST00000396097.1:c.1326G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2136G>T
  hgvsp: ENST00000256720.2:c.2136G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8539
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5874
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val797Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

2-11945280-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945280
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945280
    reference: chr 2
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2157C>T
  hgvsp: ENST00000425416.2:c.2157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2265C>T
  hgvsp: ENST00000396099.1:c.2265C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2139C>T
  hgvsp: ENST00000256720.2:c.2139C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2394C>T
  hgvsp: ENST00000449576.2:c.2394C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1329C>T
  hgvsp: ENST00000396097.1:c.1329C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.217C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.642C>T
  hgvsp: ENST00000404113.2:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
hgvs: c.2394C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

2-11945287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945287
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945287
    reference: chr 2
allele count: 1
allele frequency: 8.267742575567167e-6
allele num: 120952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+5G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+5G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+5G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+5G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+5G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.224G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+5G>A
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 0
hgvs: c.2396+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP

2-11945289-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945289
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945289
    reference: chr 2
allele count: 1
allele frequency: 8.271024945411235e-6
allele num: 120904
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+7A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+7A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+7A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+7A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.226A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+7A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+7A>G
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2396+7A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-11945289-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945289
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945288
    reference: chr 2
allele count: 1
allele frequency: 8.271024945411235e-6
allele num: 120904
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+8delC
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+8delC
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.227delC
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+8delC
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+8delC
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+8delC
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+8delC
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: c.2396+8delC
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: AC
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

2-11945300-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945300
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945300
    reference: chr 2
allele count: 1
allele frequency: 8.295863682367972e-6
allele num: 120542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.237G>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+18G>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+18G>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+18G>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+18G>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+18G>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+18G>C
  variant of: http://identifiers.org/hgnc/13345
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30794
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

2-11945306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945306
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945306
    reference: chr 2
allele count: 4
allele frequency: 3.328174662606294e-5
allele num: 120186
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+24C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+24C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.243C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+24C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+24C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+24C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+24C>T
  variant of: http://identifiers.org/hgnc/13345
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12439
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

2-11945307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945307
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945307
    reference: chr 2
allele count: 3
allele frequency: 2.496380248639473e-5
allele num: 120174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+25G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.244G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+25G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+25G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+25G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+25G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+25G>A
  variant of: http://identifiers.org/hgnc/13345
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

2-11945319-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945319
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945319
    reference: chr 2
allele count: 38
allele frequency: 3.171265000917998e-4
allele num: 119826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+37C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+37C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+37C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+37C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+37C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.256C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+37C>T
  variant of: http://identifiers.org/hgnc/13345
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10395
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9979
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21206
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3932
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24566
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8561
  bin: 9.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 4258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

2-11945324-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945324
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945324
    reference: chr 2
allele count: 8
allele frequency: 6.691536878732623e-5
allele num: 119554
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+42G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+42G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+42G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+42G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+42G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.261G>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+42G>T
  variant of: http://identifiers.org/hgnc/13345
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19388
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12842
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8535
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 5076
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

2-11945327-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945327
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945326
    reference: chr 2
allele count: 1
allele frequency: 8.377454594196099e-6
allele num: 119368
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+46delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+46delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.265delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+46delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+46delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+46delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+46delG
  variant of: http://identifiers.org/hgnc/13345
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8528
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5713
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: TG
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

2-11945329-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945329
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945328
    reference: chr 2
allele count: 1
allele frequency: 8.402655239055541e-6
allele num: 119010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+48delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.267delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+48delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+48delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+48delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+48delG
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+48delG
  variant of: http://identifiers.org/hgnc/13345
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3257
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8528
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: TG
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

2-11945330-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945330
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945330
    reference: chr 2
allele count: 8
allele frequency: 6.734233475874608e-5
allele num: 118796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.267G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+48G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+48G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+48G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+48G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+48G>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+48G>A
  variant of: http://identifiers.org/hgnc/13345
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20361
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12864
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8352
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3538
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

2-11945334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11945334
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11945334
    reference: chr 2
allele count: 2
allele frequency: 1.698629206230572e-5
allele num: 117742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2159+52C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.644+52C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134324
  ensembl transcript: ENST00000487346
  gene symbol: LPIN1
  hgvsc: ENST00000487346.1:n.271C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2396+52C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1331+52C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2267+52C>T
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2141+52C>T
  variant of: http://identifiers.org/hgnc/13345
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19497
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5925
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8527
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-11955164-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955164
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955164
    reference: chr 2
allele count: 1
allele frequency: 8.359386755387625e-6
allele num: 119626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.645-50A>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2142-50A>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2268-50A>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1332-50A>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2160-50A>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2397-50A>C
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11102
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4705
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

2-11955172-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955172
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955172
    reference: chr 2
allele count: 8
allele frequency: 6.681812107443539e-5
allele num: 119728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.645-42A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1332-42A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2268-42A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2160-42A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2397-42A>G
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2142-42A>G
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22033
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15258
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30671
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6445
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS

2-11955186-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955186
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955186
    reference: chr 2
allele count: 2
allele frequency: 1.664779916095092e-5
allele num: 120136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2160-28T>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1332-28T>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.645-28T>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2268-28T>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2142-28T>A
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2397-28T>A
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5363
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

2-11955206-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955206
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955206
    reference: chr 2
allele count: 1
allele frequency: 8.272940865018697e-6
allele num: 120876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2268-8T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.645-8T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2160-8T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2397-8T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2142-8T>C
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1332-8T>C
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2397-8T>C
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

2-11955217-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955217
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955217
    reference: chr 2
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2163T>C
  hgvsp: ENST00000425416.2:c.2163T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2400T>C
  hgvsp: ENST00000449576.2:c.2400T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.648T>C
  hgvsp: ENST00000404113.2:c.648T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2145T>C
  hgvsp: ENST00000256720.2:c.2145T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1335T>C
  hgvsp: ENST00000396097.1:c.1335T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2271T>C
  hgvsp: ENST00000396099.1:c.2271T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18139
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40810
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn800Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ

2-11955221-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955221
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955221
    reference: chr 2
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1339T>C
  hgvsp: ENSP00000379404.1:p.Tyr447His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2167T>C
  hgvsp: ENSP00000401522.2:p.Tyr723His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2275T>C
  hgvsp: ENSP00000379406.1:p.Tyr759His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2404T>C
  hgvsp: ENSP00000397908.2:p.Tyr802His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.652T>C
  hgvsp: ENSP00000386120.2:p.Tyr218His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2149T>C
  hgvsp: ENSP00000256720.2:p.Tyr717His
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr802His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

2-11955241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955241
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955241
    reference: chr 2
allele count: 2
allele frequency: 1.649511744523621e-5
allele num: 121248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1359T>C
  hgvsp: ENST00000396097.1:c.1359T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2424T>C
  hgvsp: ENST00000449576.2:c.2424T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2295T>C
  hgvsp: ENST00000396099.1:c.2295T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.672T>C
  hgvsp: ENST00000404113.2:c.672T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2187T>C
  hgvsp: ENST00000425416.2:c.2187T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2169T>C
  hgvsp: ENST00000256720.2:c.2169T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5365
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser808Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

2-11955245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955245
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955245
    reference: chr 2
allele count: 2
allele frequency: 1.649430121892886e-5
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2299C>T
  hgvsp: ENSP00000379406.1:p.Arg767Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2173C>T
  hgvsp: ENSP00000256720.2:p.Arg725Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1363C>T
  hgvsp: ENSP00000379404.1:p.Arg455Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2191C>T
  hgvsp: ENSP00000401522.2:p.Arg731Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.676C>T
  hgvsp: ENSP00000386120.2:p.Arg226Cys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2428C>T
  hgvsp: ENSP00000397908.2:p.Arg810Cys
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41045
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg810Cys
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

2-11955246-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955246
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955246
    reference: chr 2
allele count: 2
allele frequency: 1.649321304283287e-5
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2300G>A
  hgvsp: ENSP00000379406.1:p.Arg767His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1364G>A
  hgvsp: ENSP00000379404.1:p.Arg455His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.677G>A
  hgvsp: ENSP00000386120.2:p.Arg226His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2429G>A
  hgvsp: ENSP00000397908.2:p.Arg810His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2192G>A
  hgvsp: ENSP00000401522.2:p.Arg731His
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2174G>A
  hgvsp: ENSP00000256720.2:p.Arg725His
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg810His
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-11955253-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955253
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955253
    reference: chr 2
allele count: 4
allele frequency: 3.298642608566575e-5
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2307C>T
  hgvsp: ENST00000396099.1:c.2307C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.684C>T
  hgvsp: ENST00000404113.2:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2199C>T
  hgvsp: ENST00000425416.2:c.2199C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2436C>T
  hgvsp: ENST00000449576.2:c.2436C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2181C>T
  hgvsp: ENST00000256720.2:c.2181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1371C>T
  hgvsp: ENST00000396097.1:c.1371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile812Ile
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

2-11955262-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955262
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955262
    reference: chr 2
allele count: 14
allele frequency: 1.154696314869189e-4
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2445G>A
  hgvsp: ENST00000449576.2:c.2445G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.693G>A
  hgvsp: ENST00000404113.2:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2316G>A
  hgvsp: ENST00000396099.1:c.2316G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1380G>A
  hgvsp: ENST00000396097.1:c.1380G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2190G>A
  hgvsp: ENST00000256720.2:c.2190G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2208G>A
  hgvsp: ENST00000425416.2:c.2208G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18595
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40989
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala815Ala
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

2-11955263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955263
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955263
    reference: chr 2
allele count: 2
allele frequency: 1.649756660892518e-5
allele num: 121230
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2446G>A
  hgvsp: ENSP00000397908.2:p.Asp816Asn
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2191G>A
  hgvsp: ENSP00000256720.2:p.Asp731Asn
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2317G>A
  hgvsp: ENSP00000379406.1:p.Asp773Asn
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1381G>A
  hgvsp: ENSP00000379404.1:p.Asp461Asn
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.694G>A
  hgvsp: ENSP00000386120.2:p.Asp232Asn
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2209G>A
  hgvsp: ENSP00000401522.2:p.Asp737Asn
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp816Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

2-11955265-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955265
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955265
    reference: chr 2
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2448C>T
  hgvsp: ENST00000449576.2:c.2448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2319C>T
  hgvsp: ENST00000396099.1:c.2319C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2193C>T
  hgvsp: ENST00000256720.2:c.2193C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.696C>T
  hgvsp: ENST00000404113.2:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2211C>T
  hgvsp: ENST00000425416.2:c.2211C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1383C>T
  hgvsp: ENST00000396097.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40965
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5362
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp816Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

2-11955271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955271
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955271
    reference: chr 2
allele count: 2
allele frequency: 1.649811096629436e-5
allele num: 121226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2217G>A
  hgvsp: ENST00000425416.2:c.2217G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.702G>A
  hgvsp: ENST00000404113.2:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2454G>A
  hgvsp: ENST00000449576.2:c.2454G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1389G>A
  hgvsp: ENST00000396097.1:c.1389G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2325G>A
  hgvsp: ENST00000396099.1:c.2325G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2199G>A
  hgvsp: ENST00000256720.2:c.2199G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5362
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40927
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr818Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

2-11955272-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955272
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955272
    reference: chr 2
allele count: 2
allele frequency: 1.649892756970797e-5
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1390C>T
  hgvsp: ENSP00000379404.1:p.Arg464Trp
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2326C>T
  hgvsp: ENSP00000379406.1:p.Arg776Trp
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.703C>T
  hgvsp: ENSP00000386120.2:p.Arg235Trp
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2200C>T
  hgvsp: ENSP00000256720.2:p.Arg734Trp
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2455C>T
  hgvsp: ENSP00000397908.2:p.Arg819Trp
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2218C>T
  hgvsp: ENSP00000401522.2:p.Arg740Trp
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5364
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg819Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

2-11955276-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955276
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955276
    reference: chr 2
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1394G>T
  hgvsp: ENSP00000379404.1:p.Gly465Val
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2222G>T
  hgvsp: ENSP00000401522.2:p.Gly741Val
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2330G>T
  hgvsp: ENSP00000379406.1:p.Gly777Val
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2204G>T
  hgvsp: ENSP00000256720.2:p.Gly735Val
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2459G>T
  hgvsp: ENSP00000397908.2:p.Gly820Val
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.707G>T
  hgvsp: ENSP00000386120.2:p.Gly236Val
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly820Val
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

2-11955281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955281
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955281
    reference: chr 2
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2335C>T
  hgvsp: ENST00000396099.1:c.2335C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2227C>T
  hgvsp: ENST00000425416.2:c.2227C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.712C>T
  hgvsp: ENST00000404113.2:c.712C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2464C>T
  hgvsp: ENST00000449576.2:c.2464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1399C>T
  hgvsp: ENST00000396097.1:c.1399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2209C>T
  hgvsp: ENST00000256720.2:c.2209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu822Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

2-11955284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955284
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955284
    reference: chr 2
allele count: 4
allele frequency: 3.301419610432486e-5
allele num: 121160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2338C>T
  hgvsp: ENSP00000379406.1:p.His780Tyr
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2212C>T
  hgvsp: ENSP00000256720.2:p.His738Tyr
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1402C>T
  hgvsp: ENSP00000379404.1:p.His468Tyr
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2467C>T
  hgvsp: ENSP00000397908.2:p.His823Tyr
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.715C>T
  hgvsp: ENSP00000386120.2:p.His239Tyr
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2230C>T
  hgvsp: ENSP00000401522.2:p.His744Tyr
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His823Tyr
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

2-11955295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955295
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955295
    reference: chr 2
allele count: 18
allele frequency: 1.487013416165488e-4
allele num: 121048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2223C>T
  hgvsp: ENST00000256720.2:c.2223C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2349C>T
  hgvsp: ENST00000396099.1:c.2349C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2241C>T
  hgvsp: ENST00000425416.2:c.2241C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1413C>T
  hgvsp: ENST00000396097.1:c.1413C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.726C>T
  hgvsp: ENST00000404113.2:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2478C>T
  hgvsp: ENST00000449576.2:c.2478C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27847
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18459
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5374
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn826Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

2-11955296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955296
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955296
    reference: chr 2
allele count: 2
allele frequency: 1.652428243303535e-5
allele num: 121034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.727G>A
  hgvsp: ENSP00000386120.2:p.Glu243Lys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2224G>A
  hgvsp: ENSP00000256720.2:p.Glu742Lys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1414G>A
  hgvsp: ENSP00000379404.1:p.Glu472Lys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2242G>A
  hgvsp: ENSP00000401522.2:p.Glu748Lys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2350G>A
  hgvsp: ENSP00000379406.1:p.Glu784Lys
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2479G>A
  hgvsp: ENSP00000397908.2:p.Glu827Lys
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40374
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu827Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

2-11955306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955306
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955306
    reference: chr 2
allele count: 14
allele frequency: 1.158729370478886e-4
allele num: 120822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1424C>T
  hgvsp: ENSP00000379404.1:p.Thr475Met
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.737C>T
  hgvsp: ENSP00000386120.2:p.Thr246Met
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2252C>T
  hgvsp: ENSP00000401522.2:p.Thr751Met
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2489C>T
  hgvsp: ENSP00000397908.2:p.Thr830Met
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2360C>T
  hgvsp: ENSP00000379406.1:p.Thr787Met
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2234C>T
  hgvsp: ENSP00000256720.2:p.Thr745Met
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39458
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr830Met
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

2-11955307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955307
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955307
    reference: chr 2
allele count: 32
allele frequency: 2.648787352040394e-4
allele num: 120810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2253G>A
  hgvsp: ENST00000425416.2:c.2253G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2235G>A
  hgvsp: ENST00000256720.2:c.2235G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.738G>A
  hgvsp: ENST00000404113.2:c.738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2361G>A
  hgvsp: ENST00000396099.1:c.2361G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1425G>A
  hgvsp: ENST00000396097.1:c.1425G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2490G>A
  hgvsp: ENST00000449576.2:c.2490G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18215
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5382
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr830Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

2-11955322-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955322
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955322
    reference: chr 2
allele count: 1777
allele frequency: 1.477042258203943e-2
allele num: 120308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2250G>C
  hgvsp: ENST00000256720.2:c.2250G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2505G>C
  hgvsp: ENST00000449576.2:c.2505G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2376G>C
  hgvsp: ENST00000396099.1:c.2376G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1440G>C
  hgvsp: ENST00000396097.1:c.1440G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.753G>C
  hgvsp: ENST00000404113.2:c.753G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2268G>C
  hgvsp: ENST00000425416.2:c.2268G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 4.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 3.25e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 4.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 26667
  bin: 2.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 17689
  bin: 2.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Gly835Gly
num of homozygotes: 100
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

2-11955322-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11955322
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 11955322
    reference: chr 2
allele count: 2
allele frequency: 1.662399840409615e-5
allele num: 120308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379404
  ensembl transcript: ENST00000396097
  gene symbol: LPIN1
  hgvsc: ENST00000396097.1:c.1440G>A
  hgvsp: ENST00000396097.1:c.1440G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000256720
  ensembl transcript: ENST00000256720
  gene symbol: LPIN1
  hgvsc: ENST00000256720.2:c.2250G>A
  hgvsp: ENST00000256720.2:c.2250G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000397908
  ensembl transcript: ENST00000449576
  gene symbol: LPIN1
  hgvsc: ENST00000449576.2:c.2505G>A
  hgvsp: ENST00000449576.2:c.2505G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000401522
  ensembl transcript: ENST00000425416
  gene symbol: LPIN1
  hgvsc: ENST00000425416.2:c.2268G>A
  hgvsp: ENST00000425416.2:c.2268G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000386120
  ensembl transcript: ENST00000404113
  gene symbol: LPIN1
  hgvsc: ENST00000404113.2:c.753G>A
  hgvsp: ENST00000404113.2:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134324
  ensembl protein: ENSP00000379406
  ensembl transcript: ENST00000396099
  gene symbol: LPIN1
  hgvsc: ENST00000396099.1:c.2376G>A
  hgvsp: ENST00000396099.1:c.2376G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13345
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37871
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly835Gly
num of homozygotes: 0
population: European (Finnish)
reference allele: G

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3987
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5043
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15048
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

FS
type: SiteQuality
SIO_000300: 4.471e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.023e0

DP
type: SiteQuality
SIO_000300: 2.277204e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.7e-2

DP
type: SiteQuality
SIO_000300: 2.276942e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

FS
type: SiteQuality
SIO_000300: 5.206e0

VQSLOD
type: SiteQuality
SIO_000300: 4.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.117e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 2.276613e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.227e0

VQSLOD
type: SiteQuality
SIO_000300: 8.120000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.068e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 22

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.114571318723568e-3
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.79e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.328e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.277281e6

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495594317568783e-5
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 2.205e0

QD
type: SiteQuality
SIO_000300: 1.304e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.432e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-2

DP
type: SiteQuality
SIO_000300: 2.276883e6

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
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GenotypeQuality
all individuals: 21
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1242
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GenotypeQuality
all individuals: 3930
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.558981465442578e-3
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 462
allele frequency: 4.492415402567095e-2
allele num: 10284
num of homozygotes: 12

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.101534119907533e-4
allele num: 66618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.321573e6

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.73e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.679e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.74e-2

QD
type: SiteQuality
SIO_000300: 1.356e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.445100354191264e-4
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.127149915566952e-5
allele num: 63956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11004
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.174364040503828e-5
allele num: 16196
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
type: SiteQuality
SIO_000300: 8.070000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

InbreedingCoeff
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SIO_000300: -1.3e-3

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.086e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
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South Asian
type: Population
allele count: 1
allele frequency: 6.176652254478072e-5
allele num: 16190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.15473441108545e-3
allele num: 866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 2.400399e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.446e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563574957783476e-5
allele num: 63956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.400399e6

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.446e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.427e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

GenotypeQuality
all individuals: 31
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variant carriers: 7

GenotypeQuality
all individuals: 3258
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variant carriers: 73

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 357
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1916
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variant carriers: 149

GenotypeQuality
all individuals: 4009
bin: 6.75e1
variant carriers: 58

European (Non-Finnish)
type: Population
allele count: 12663
allele frequency: 1.901180073867219e-1
allele num: 66606
num of homozygotes: 1256

South Asian
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allele count: 1842
allele frequency: 1.116363636363636e-1
allele num: 16500
num of homozygotes: 129

African
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allele count: 4290
allele frequency: 4.143326250724358e-1
allele num: 10354
num of homozygotes: 919

East Asian
type: Population
allele count: 1108
allele frequency: 1.285084667130596e-1
allele num: 8622
num of homozygotes: 73

Latino
type: Population
allele count: 2461
allele frequency: 2.135543214161749e-1
allele num: 11524
num of homozygotes: 262

Other
type: Population
allele count: 167
allele frequency: 1.83920704845815e-1
allele num: 908
num of homozygotes: 21

European (Finnish)
type: Population
allele count: 774
allele frequency: 1.173082752349197e-1
allele num: 6598
num of homozygotes: 43

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.416864e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

MQ
type: SiteQuality
SIO_000300: 6.006e1

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 608
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GenotypeQuality
all individuals: 288
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64146
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.286145335680161e-5
allele num: 15908
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
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SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.649475e6

QD
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SIO_000300: 1.598e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.433e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542543345468008e-5
allele num: 64828
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

DP
type: SiteQuality
SIO_000300: 1.700312e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 9.24e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.691800736576855e-5
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.32e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.343e0

DP
type: SiteQuality
SIO_000300: 1.750796e6

QD
type: SiteQuality
SIO_000300: 1.46e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 31

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.206098843322818e-4
allele num: 66570
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736412571627018e-4
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.943e0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

DP
type: SiteQuality
SIO_000300: 1.752955e6

FS
type: SiteQuality
SIO_000300: 1.457e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

QD
type: SiteQuality
SIO_000300: 1.167e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8536
bin: 9.75e1
variant carriers: 8

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.199832023516708e-4
allele num: 66676
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

DP
type: SiteQuality
SIO_000300: 1.755691e6

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

FS
type: SiteQuality
SIO_000300: 6.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 477
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.702e0

FS
type: SiteQuality
SIO_000300: 4.871e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.535e1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

DP
type: SiteQuality
SIO_000300: 1.756254e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.756621e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.95e-1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.1e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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DP
type: SiteQuality
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QD
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.99e-1

DP
type: SiteQuality
SIO_000300: 1.757716e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.962e0

FS
type: SiteQuality
SIO_000300: 1.969e0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

QD
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SIO_000300: 9.720000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

MQRankSum
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DP
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InbreedingCoeff
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.099e1

ReadPosRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.485e0

FS
type: SiteQuality
SIO_000300: 4.805e0

VQSLOD
type: SiteQuality
SIO_000300: 8.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 0.0e0

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.73e-1

QD
type: SiteQuality
SIO_000300: 1.381e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

DP
type: SiteQuality
SIO_000300: 1.757975e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.757761e6

FS
type: SiteQuality
SIO_000300: 5.981e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.304e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.304e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

FS
type: SiteQuality
SIO_000300: 5.981e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.757761e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

QD
type: SiteQuality
SIO_000300: 1.536e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.894e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.389e0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

DP
type: SiteQuality
SIO_000300: 1.757646e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.023e0

FS
type: SiteQuality
SIO_000300: 1.683e0

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.798453330136083e-4
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.757913e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
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ClippingRankSum
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.753e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
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African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
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Other
type: Population
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South Asian
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allele frequency: 3.638127577007034e-4
allele num: 16492
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East Asian
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MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
type: Population
allele count: 0
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num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele num: 906
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66710
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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MQ
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 7.75e1
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 5.78168362627197e-4
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.757191e6

MQRankSum
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SIO_000300: -1.5e-1

ClippingRankSum
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SIO_000300: 2.22e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 8.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
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allele count: 9
allele frequency: 8.652182272639877e-4
allele num: 10402
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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FS
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VQSLOD
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DP
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QD
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MQRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 5.944e1

BaseQRankSum
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SIO_000300: -2.817e0

ClippingRankSum
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SIO_000300: -1.4e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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FS
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SIO_000300: 3.02e0

BaseQRankSum
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SIO_000300: 3.05e0

ReadPosRankSum
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SIO_000300: 2.89e0

MQRankSum
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SIO_000300: -1.156e0

ClippingRankSum
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DP
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 1.322e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

African
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allele count: 0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.593e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.521e1

FS
type: SiteQuality
SIO_000300: 9.542e0

VQSLOD
type: SiteQuality
SIO_000300: -5.142e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.122e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

DP
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.004924037710923e-5
allele num: 66612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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South Asian
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allele frequency: 6.08198515995621e-5
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Latino
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European (Non-Finnish)
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allele num: 66564
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DP
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

Other
type: Population
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African
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South Asian
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European (Finnish)
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allele num: 6602
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East Asian
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InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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QD
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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Latino
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East Asian
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Other
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African
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European (Non-Finnish)
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allele num: 66464
num of homozygotes: 0

South Asian
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FS
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InbreedingCoeff
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ClippingRankSum
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.31e-1

QD
type: SiteQuality
SIO_000300: 1.518e1

FS
type: SiteQuality
SIO_000300: 3.509e0

DP
type: SiteQuality
SIO_000300: 1.746102e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 36345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8533
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.25e1
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GenotypeQuality
all individuals: 1567
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50934283213089e-5
allele num: 66254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.165e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.977e-1

DP
type: SiteQuality
SIO_000300: 1.724276e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

GenotypeQuality
all individuals: 478
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 470
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variant carriers: 0

GenotypeQuality
all individuals: 8532
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.735150244584206e-5
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.126700159294204e-5
allele num: 16322
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.336994624912363e-4
allele num: 8558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

MQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

DP
type: SiteQuality
SIO_000300: 1.703568e6

VQSLOD
type: SiteQuality
SIO_000300: -8.656e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

FS
type: SiteQuality
SIO_000300: 2.659e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

QD
type: SiteQuality
SIO_000300: 2.567e1

GenotypeQuality
all individuals: 554
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8530
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 945
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.748557440111908e-4
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514050387596899e-5
allele num: 66048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

DP
type: SiteQuality
SIO_000300: 1.699595e6

FS
type: SiteQuality
SIO_000300: 3.827e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.243e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

QD
type: SiteQuality
SIO_000300: 1.307e1

GenotypeQuality
all individuals: 1373
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3624
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4456
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 7
allele frequency: 6.140350877192983e-4
allele num: 11400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.908103916246607e-4
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.645089760335349e-4
allele num: 65842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.088280060882801e-4
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.636211e6

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

QD
type: SiteQuality
SIO_000300: 1.394e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

FS
type: SiteQuality
SIO_000300: 8.34e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.83e-1

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
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variant carriers: 0

GenotypeQuality
all individuals: 556
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variant carriers: 0

GenotypeQuality
all individuals: 2345
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variant carriers: 0

GenotypeQuality
all individuals: 921
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variant carriers: 0

GenotypeQuality
all individuals: 4098
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variant carriers: 0

GenotypeQuality
all individuals: 2713
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variant carriers: 0

GenotypeQuality
all individuals: 3764
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variant carriers: 0

GenotypeQuality
all individuals: 4878
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.21747070461117e-4
allele num: 65710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 4.249e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

DP
type: SiteQuality
SIO_000300: 1.614869e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.203e0

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
all individuals: 4463
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16291
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
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variant carriers: 0

GenotypeQuality
all individuals: 1816
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variant carriers: 0

GenotypeQuality
all individuals: 1452
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variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524343770007012e-5
allele num: 65602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.045e1

DP
type: SiteQuality
SIO_000300: 1.606849e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

MQ
type: SiteQuality
SIO_000300: 5.903e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

GenotypeQuality
all individuals: 3750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 3540
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5891
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
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variant carriers: 0

GenotypeQuality
all individuals: 5444
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variant carriers: 0

GenotypeQuality
all individuals: 13483
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variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529613313754283e-5
allele num: 65376
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

MQRankSum
type: SiteQuality
SIO_000300: -1.085e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

DP
type: SiteQuality
SIO_000300: 1.605392e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

QD
type: SiteQuality
SIO_000300: 1.117e1

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8531
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5880
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
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variant carriers: 0

GenotypeQuality
all individuals: 5156
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.944987019409074e-4
allele num: 16178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.333e1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

FS
type: SiteQuality
SIO_000300: 2.531e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.16e-1

DP
type: SiteQuality
SIO_000300: 1.606072e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

GenotypeQuality
all individuals: 6023
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2514
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
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variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5160
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.991188635137565e-5
allele num: 11122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.205690860863275e-4
allele num: 8294
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

DP
type: SiteQuality
SIO_000300: 1.611288e6

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 1.151e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.141e0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

GenotypeQuality
all individuals: 2013
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
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GenotypeQuality
all individuals: 1369
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6396
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variant carriers: 0

GenotypeQuality
all individuals: 4402
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.179245283018868e-4
allele num: 8480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 9.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.66e-1

FS
type: SiteQuality
SIO_000300: 2.866e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

DP
type: SiteQuality
SIO_000300: 1.541915e6

GenotypeQuality
all individuals: 1024
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5366
bin: 9.75e1
variant carriers: 8

Latino
type: Population
allele count: 8
allele frequency: 7.010164738871364e-4
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65848
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.142e1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.536e0

DP
type: SiteQuality
SIO_000300: 1.573723e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.437e0

GenotypeQuality
all individuals: 729
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6775
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744591765526867e-4
allele num: 11464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.587e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.061e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

VQSLOD
type: SiteQuality
SIO_000300: 3.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

DP
type: SiteQuality
SIO_000300: 1.632224e6

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40501
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 1.664178e6

VQSLOD
type: SiteQuality
SIO_000300: 8.22e-1

FS
type: SiteQuality
SIO_000300: 2.575e0

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e0

QD
type: SiteQuality
SIO_000300: 1.548e1

GenotypeQuality
all individuals: 5362
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.670496e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 7.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40865
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.671984e6

GenotypeQuality
all individuals: 2020
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2037
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41048
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000300030003e-5
allele num: 66660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.675143e6

FS
type: SiteQuality
SIO_000300: 1.532e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: -8.71e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

GenotypeQuality
all individuals: 107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5363
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

FS
type: SiteQuality
SIO_000300: 1.766e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.251e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.676339e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

GenotypeQuality
all individuals: 5365
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41043
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.676356e6

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

GenotypeQuality
all individuals: 109
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7176
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5366
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 842
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.595604775912787e-4
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

DP
type: SiteQuality
SIO_000300: 1.676343e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.43e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.19e-1

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5371
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-4
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.001170152119776e-5
allele num: 66658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.635482307319437e-4
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.102e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.257e1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

DP
type: SiteQuality
SIO_000300: 1.676722e6

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
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GenotypeQuality
all individuals: 563
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.925298421255295e-4
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.52e0

DP
type: SiteQuality
SIO_000300: 1.675998e6

FS
type: SiteQuality
SIO_000300: 4.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.127e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.519756838905775e-4
allele num: 6580
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.15e0

MQRankSum
type: SiteQuality
SIO_000300: -1.558e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.722e0

DP
type: SiteQuality
SIO_000300: 1.675956e6

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 177
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variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

QD
type: SiteQuality
SIO_000300: 1.175e1

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 1.675846e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.95e-1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1330
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variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001200480192077e-5
allele num: 66640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.881e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

FS
type: SiteQuality
SIO_000300: 5.79e-1

DP
type: SiteQuality
SIO_000300: 1.675665e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.055e1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 40923
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 5362
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.957e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.153e0

DP
type: SiteQuality
SIO_000300: 1.675068e6

QD
type: SiteQuality
SIO_000300: 1.153e1

GenotypeQuality
all individuals: 252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2004
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 5361
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.48e0

QD
type: SiteQuality
SIO_000300: 9.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.674074e6

MQRankSum
type: SiteQuality
SIO_000300: -3.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.143e0

MQ
type: SiteQuality
SIO_000300: 5.747e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5363
bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 1989
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.89073039121218e-4
allele num: 10378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

DP
type: SiteQuality
SIO_000300: 1.672992e6

VQSLOD
type: SiteQuality
SIO_000300: 9.78e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.105e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 838
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.727975270479134e-4
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502313562886846e-5
allele num: 66564
num of homozygotes: 0

South Asian
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allele count: 9
allele frequency: 5.45719136551055e-4
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.669269e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 1.271e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 838
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
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South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

Other
type: Population
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allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.16e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.86e-1

FS
type: SiteQuality
SIO_000300: 5.007e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

DP
type: SiteQuality
SIO_000300: 1.668658e6

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 325
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5368
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variant carriers: 14

GenotypeQuality
all individuals: 1941
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736714136853074e-4
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.031520004816811e-5
allele num: 66434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.638127577007034e-4
allele num: 16492
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.96e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.660166e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.033151666616482e-5
allele num: 66422
num of homozygotes: 0

East Asian
type: Population
allele count: 25
allele frequency: 2.891510525098312e-3
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

FS
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

DP
type: SiteQuality
SIO_000300: 1.660699e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.321e1

GenotypeQuality
all individuals: 1209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6660
bin: 9.75e1
variant carriers: 1639

GenotypeQuality
all individuals: 245
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 37871
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 365
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 772
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 6414
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 326
bin: 4.75e1
variant carriers: 1

Other
type: Population
allele count: 6
allele frequency: 6.666666666666667e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 121
allele frequency: 1.82978466005323e-3
allele num: 66128
num of homozygotes: 1

East Asian
type: Population
allele count: 7
allele frequency: 8.101851851851852e-4
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 94
allele frequency: 8.183876022984503e-3
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 1497
allele frequency: 1.466209598432909e-1
allele num: 10210
num of homozygotes: 99

South Asian
type: Population
allele count: 52
allele frequency: 3.153808830664726e-3
allele num: 16488
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.003e-1

DP
type: SiteQuality
SIO_000300: 1.670602e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

FS
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

QD
type: SiteQuality
SIO_000300: 1.513e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6660
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0