1-201754423-TTTTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754423
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754418
    reference: chr 1
allele count: 4
allele frequency: 3.309559663086826e-5
allele num: 120862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-13_688-9delTTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-13_1632-9delTTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-13_2805-9delTTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-13_2805-9delTTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-13_1477-9delTTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-13_2805-9delTTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-13_2805-9delTTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-13_2107-9delTTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-13_2844-9delTTTAT
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16543
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: TTTTTA
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

1-201754423-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754423
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754423
    reference: chr 1
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-15T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-15T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-15T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-15T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-15T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-15T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-15T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31932A>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-15T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-15T>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

1-201754423-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754423
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754423
    reference: chr 1
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-15T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-15T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-15T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-15T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31932A>G
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-15T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-15T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-15T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-15T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-15T>C
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

1-201754424-TTTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754424
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754420
    reference: chr 1
allele count: 9
allele frequency: 7.444538190480918e-5
allele num: 120894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-12_2107-9delTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-12_2805-9delTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-12_2805-9delTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-12_688-9delTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-12_1477-9delTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-12_2805-9delTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-12_2844-9delTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31927_684+31930delTAAA
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-12_2805-9delTTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-12_1632-9delTTAT
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16545
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9931
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TTTTA
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-201754425-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754425
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754425
    reference: chr 1
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-13T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31930A>G
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-13T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-13T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-13T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-13T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-13T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-13T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-13T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-13T>C
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16526
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum

1-201754425-TTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754425
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754422
    reference: chr 1
allele count: 32
allele frequency: 2.645983892573054e-4
allele num: 120938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-11_688-9delTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-11_1632-9delTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-11_2107-9delTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-11_2805-9delTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-11_1477-9delTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-11_2805-9delTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-11_2844-9delTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31927_684+31929delTAA
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-11_2805-9delTAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-11_2805-9delTAT
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16526
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2820
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: TTTA
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

1-201754426-TTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754426
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754424
    reference: chr 1
allele count: 97
allele frequency: 8.038851687330107e-4
allele num: 120664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-10_2844-9delAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-10_688-9delAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-10_2107-9delAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-10_2805-9delAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-10_1632-9delAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31927_684+31928delTA
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-10_1477-9delAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-10_2805-9delAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-10_2805-9delAT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-10_2805-9delAT
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16474
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 3
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: TTA
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-201754427-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754427
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754427
    reference: chr 1
allele count: 10
allele frequency: 8.368901163277262e-5
allele num: 119490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-11T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31928A>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-11T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-11T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-11T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-11T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-11T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-11T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-11T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-11T>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16454
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff

1-201754427-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754427
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754426
    reference: chr 1
allele count: 53
allele frequency: 4.435517616536948e-4
allele num: 119490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-10delA
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31927delT
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-10delA
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-10delA
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-10delA
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-10delA
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-10delA
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-10delA
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-10delA
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-10delA
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16454
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: TA
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

1-201754428-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754428
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754428
    reference: chr 1
allele count: 50
allele frequency: 5.260942760942761e-4
allele num: 95040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-10A>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-10A>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-10A>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-10A>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-10A>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31927T>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-10A>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-10A>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-10A>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-10A>T
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15294
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10455
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-201754433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754433
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754433
    reference: chr 1
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31922G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-5C>T
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16634
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: c.2805-5C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/1-201754435-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754435
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754435
    reference: chr 1
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2844-3C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.688-3C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31920G>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1632-3C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2805-3C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2107-3C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2805-3C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2805-3C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1477-3C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2805-3C>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16634
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34000
  bin: 9.75e1
  variant carriers: 1
hgvs: c.2805-3C>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

1-201754444-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754444
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754444
    reference: chr 1
allele count: 5310
allele frequency: 4.378298153034301e-2
allele num: 121280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2811G>C
  hgvsp: ENSP00000356266.4:p.Gln937His
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1638G>C
  hgvsp: ENSP00000356264.1:p.Gln546His
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2811G>C
  hgvsp: ENSP00000356269.3:p.Gln937His
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1483G>C
  hgvsp: ENSP00000405437.1:p.Gln495His
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.694G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2850G>C
  hgvsp: ENSP00000356271.1:p.Gln950His
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2113G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2811G>C
  hgvsp: ENSP00000356265.4:p.Gln937His
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2811G>C
  hgvsp: ENSP00000295624.6:p.Gln937His
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31911C>G
  variant of: http://identifiers.org/hgnc/40892
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 6.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 2.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 19969
  bin: 9.75e1
  variant carriers: 4406
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 7.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 7.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 6.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 5.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 3.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 8.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 8.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 9.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 5.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Gln937His
num of homozygotes: 163
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-201754445-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754445
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754445
    reference: chr 1
allele count: 4
allele frequency: 3.298044259753966e-5
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.695C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1639C>T
  hgvsp: ENSP00000356264.1:p.Arg547Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2812C>T
  hgvsp: ENSP00000356266.4:p.Arg938Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31910G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2812C>T
  hgvsp: ENSP00000356265.4:p.Arg938Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2114C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1484C>T
  hgvsp: ENSP00000405437.1:p.Arg496Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2851C>T
  hgvsp: ENSP00000356271.1:p.Arg951Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2812C>T
  hgvsp: ENSP00000356269.3:p.Arg938Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2812C>T
  hgvsp: ENSP00000295624.6:p.Arg938Trp
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19967
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg938Trp
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

1-201754446-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754446
    reference: chr 1
allele count: 3
allele frequency: 2.473084595980413e-5
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2115G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2852G>A
  hgvsp: ENSP00000356271.1:p.Arg951Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2813G>A
  hgvsp: ENSP00000356265.4:p.Arg938Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1640G>A
  hgvsp: ENSP00000356264.1:p.Arg547Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2813G>A
  hgvsp: ENSP00000295624.6:p.Arg938Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2813G>A
  hgvsp: ENSP00000356266.4:p.Arg938Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2813G>A
  hgvsp: ENSP00000356269.3:p.Arg938Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31909C>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.696G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1485G>A
  hgvsp: ENSP00000405437.1:p.Arg496Gln
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19970
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4144
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg938Gln
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-201754451-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754451
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754451
    reference: chr 1
allele count: 2
allele frequency: 1.648451280022419e-5
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2818C>T
  hgvsp: ENSP00000356269.3:p.Arg940Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.701C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1645C>T
  hgvsp: ENSP00000356264.1:p.Arg549Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2857C>T
  hgvsp: ENSP00000356271.1:p.Arg953Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2818C>T
  hgvsp: ENSP00000356266.4:p.Arg940Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2120C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2818C>T
  hgvsp: ENSP00000295624.6:p.Arg940Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31904G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2818C>T
  hgvsp: ENSP00000356265.4:p.Arg940Trp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1490C>T
  hgvsp: ENSP00000405437.1:p.Arg498Trp
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19971
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg940Trp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

1-201754452-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754452
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754452
    reference: chr 1
allele count: 4
allele frequency: 3.296793867963405e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.702G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2819G>A
  hgvsp: ENSP00000356266.4:p.Arg940Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2858G>A
  hgvsp: ENSP00000356271.1:p.Arg953Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1491G>A
  hgvsp: ENSP00000405437.1:p.Arg498Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2819G>A
  hgvsp: ENSP00000356269.3:p.Arg940Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2819G>A
  hgvsp: ENSP00000356265.4:p.Arg940Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1646G>A
  hgvsp: ENSP00000356264.1:p.Arg549Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2121G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31903C>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2819G>A
  hgvsp: ENSP00000295624.6:p.Arg940Gln
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19973
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg940Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-201754464-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754464
    reference: chr 1
allele count: 2
allele frequency: 1.648043772042586e-5
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2831C>T
  hgvsp: ENSP00000356265.4:p.Pro944Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2870C>T
  hgvsp: ENSP00000356271.1:p.Pro957Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2831C>T
  hgvsp: ENSP00000356269.3:p.Pro944Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1658C>T
  hgvsp: ENSP00000356264.1:p.Pro553Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2831C>T
  hgvsp: ENSP00000356266.4:p.Pro944Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2831C>T
  hgvsp: ENSP00000295624.6:p.Pro944Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2133C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.714C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31891G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1503C>T
  hgvsp: ENSP00000405437.1:p.Pro502Leu
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19975
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro944Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

1-201754474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754474
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754474
    reference: chr 1
allele count: 7
allele frequency: 5.767582888405511e-5
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31881C>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2841G>A
  hgvsp: ENST00000295624.6:c.2841G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2880G>A
  hgvsp: ENST00000367302.1:c.2880G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2841G>A
  hgvsp: ENST00000367297.4:c.2841G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2143G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.724G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1668G>A
  hgvsp: ENST00000367295.1:c.1668G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2841G>A
  hgvsp: ENST00000367300.3:c.2841G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2841G>A
  hgvsp: ENST00000367296.4:c.2841G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1513G>A
  hgvsp: ENST00000430015.1:c.1513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19976
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly947Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-201754475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754475
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754475
    reference: chr 1
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2144C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2842C>T
  hgvsp: ENSP00000356265.4:p.Leu948Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2842C>T
  hgvsp: ENSP00000356266.4:p.Leu948Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1669C>T
  hgvsp: ENSP00000356264.1:p.Leu557Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.725C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2881C>T
  hgvsp: ENSP00000356271.1:p.Leu961Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2842C>T
  hgvsp: ENSP00000295624.6:p.Leu948Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1514C>T
  hgvsp: ENSP00000405437.1:p.Leu506Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2842C>T
  hgvsp: ENSP00000356269.3:p.Leu948Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31880G>A
  variant of: http://identifiers.org/hgnc/40892
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19976
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36291
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu948Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-201754484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754484
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754484
    reference: chr 1
allele count: 17
allele frequency: 1.400675620004944e-4
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+5C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31871G>A
  variant of: http://identifiers.org/hgnc/40892
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19982
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.75e1
  variant carriers: 0
hgvs: c.2846+5C>T
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

1-201754485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754485
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754485
    reference: chr 1
allele count: 23
allele frequency: 1.895000494347955e-4
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+6C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+6C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+6C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+6C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31870G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+6C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+6C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+6C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+6C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+6C>T
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19999
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
hgvs: c.2846+6C>T
num of homozygotes: 1
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

1-201754489-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754489
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754489
    reference: chr 1
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+10T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+10T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+10T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31866A>C
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+10T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+10T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+10T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+10T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+10T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+10T>G
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19998
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-201754491-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754491
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754491
    reference: chr 1
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31864T>G
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+12A>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+12A>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+12A>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+12A>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+12A>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+12A>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+12A>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+12A>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+12A>C
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19999
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

1-201754504-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754504
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754504
    reference: chr 1
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+25T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+25T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+25T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+25T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+25T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+25T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+25T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31851A>G
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+25T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+25T>C
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19999
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/1-201754505-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754505
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754505
    reference: chr 1
allele count: 140
allele frequency: 1.153611628405214e-3
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+26C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+26C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+26C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+26C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+26C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+26C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+26C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+26C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31850G>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+26C>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20080
  bin: 9.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36359
  bin: 9.75e1
  variant carriers: 140
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

1-201754507-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754507
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754507
    reference: chr 1
allele count: 2
allele frequency: 1.648016612007449e-5
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+28C>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31848G>C
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+28C>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+28C>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+28C>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+28C>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+28C>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+28C>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+28C>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+28C>G
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20078
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

1-201754511-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754511
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754511
    reference: chr 1
allele count: 5
allele frequency: 4.119905736556747e-5
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+32A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+32A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+32A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+32A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+32A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+32A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+32A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+32A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31844T>C
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+32A>G
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20081
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

1-201754515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754515
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754515
    reference: chr 1
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+36G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+36G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31840C>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+36G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+36G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+36G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+36G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+36G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+36G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+36G>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20081
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

1-201754525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754525
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754525
    reference: chr 1
allele count: 10
allele frequency: 8.24089792823826e-5
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+46G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+46G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+46G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+46G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+46G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+46G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+46G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+46G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31830C>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+46G>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20088
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3988
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

1-201754525-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754525
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754525
    reference: chr 1
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+46G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31830C>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+46G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+46G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+46G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+46G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+46G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+46G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+46G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+46G>T
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20088
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-201754526-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754526
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754526
    reference: chr 1
allele count: 61
allele frequency: 5.026947736225339e-4
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+47T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+47T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+47T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+47T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+47T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+47T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31829A>G
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+47T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+47T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+47T>C
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20109
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3991
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ

1-201754528-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754528
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754528
    reference: chr 1
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+49T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+49T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+49T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31827A>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+49T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+49T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+49T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+49T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+49T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+49T>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23034
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

1-201754528-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754528
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754528
    reference: chr 1
allele count: 5562
allele frequency: 4.583814076149662e-2
allele num: 121340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+49T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+49T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+49T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+49T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+49T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31827A>G
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+49T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+49T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+49T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+49T>C
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 2.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 9.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 8.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 3.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 23034
  bin: 9.75e1
  variant carriers: 4644
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 7.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 194
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

1-201754529-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754529
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754529
    reference: chr 1
allele count: 2
allele frequency: 1.648206751054852e-5
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+50G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+50G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+50G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+50G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31826C>G
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+50G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+50G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+50G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+50G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+50G>C
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22970
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5585
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-201754531-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201754531
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201754531
    reference: chr 1
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.729+52A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2846+52A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2846+52A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+31824T>C
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1518+52A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2846+52A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2148+52A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2885+52A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1673+52A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2846+52A>G
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22971
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38197
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-201755512-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755512
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755512
    reference: chr 1
allele count: 1
allele frequency: 8.700342793506064e-6
allele num: 114938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2886-45C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.730-45C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1674-45C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2149-45C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2847-45C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2847-45C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2847-45C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30843G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1519-45C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2847-45C>T
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5475
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

1-201755513-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755513
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755513
    reference: chr 1
allele count: 2
allele frequency: 1.739675028704638e-5
allele num: 114964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.730-44G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2886-44G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30842C>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2847-44G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2149-44G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2847-44G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2847-44G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2847-44G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1674-44G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1519-44G>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-201755513-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755513
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755513
    reference: chr 1
allele count: 2
allele frequency: 1.739675028704638e-5
allele num: 114964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1519-44G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30842C>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2847-44G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.730-44G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2149-44G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2847-44G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2847-44G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2886-44G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1674-44G>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2847-44G>T
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

1-201755535-GTTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755535
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755532
    reference: chr 1
allele count: 1
allele frequency: 8.618163641691228e-6
allele num: 116034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2847-17_2847-15delTCT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2149-17_2149-15delTCT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2847-17_2847-15delTCT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2886-17_2886-15delTCT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2847-17_2847-15delTCT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1519-17_1519-15delTCT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.730-17_730-15delTCT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2847-17_2847-15delTCT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1674-17_1674-15delTCT
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30817_684+30819delGAA
  variant of: http://identifiers.org/hgnc/40892
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: GTTC
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

1-201755540-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755540
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755540
    reference: chr 1
allele count: 2
allele frequency: 1.719187855656988e-5
allele num: 116334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2847-17T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2847-17T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1519-17T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2886-17T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30815A>C
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2847-17T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.730-17T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2149-17T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1674-17T>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2847-17T>G
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

1-201755564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755564
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755564
    reference: chr 1
allele count: 3
allele frequency: 2.527422534499318e-5
allele num: 118698
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30791G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2854C>T
  hgvsp: ENSP00000356265.4:p.Leu952Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2854C>T
  hgvsp: ENSP00000356266.4:p.Leu952Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1526C>T
  hgvsp: ENSP00000405437.1:p.Leu510Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.737C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2854C>T
  hgvsp: ENSP00000295624.6:p.Leu952Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2893C>T
  hgvsp: ENSP00000356271.1:p.Leu965Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2854C>T
  hgvsp: ENSP00000356269.3:p.Leu952Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1681C>T
  hgvsp: ENSP00000356264.1:p.Leu561Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2156C>T
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu952Phe
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

1-201755576-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755576
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755576
    reference: chr 1
allele count: 2
allele frequency: 1.667583837777444e-5
allele num: 119934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1693G>C
  hgvsp: ENSP00000356264.1:p.Glu565Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2866G>C
  hgvsp: ENSP00000356266.4:p.Glu956Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2168G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30779C>G
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1538G>C
  hgvsp: ENSP00000405437.1:p.Glu514Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2866G>C
  hgvsp: ENSP00000356265.4:p.Glu956Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2905G>C
  hgvsp: ENSP00000356271.1:p.Glu969Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.9G>C
  hgvsp: ENSP00000389123.1:p.Glu4Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2866G>C
  hgvsp: ENSP00000295624.6:p.Glu956Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.749G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2866G>C
  hgvsp: ENSP00000356269.3:p.Glu956Gln
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5466
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu956Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

1-201755595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755595
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755595
    reference: chr 1
allele count: 1
allele frequency: 8.271435424903638e-6
allele num: 120898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.28G>A
  hgvsp: ENSP00000389123.1:p.Arg10Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2885G>A
  hgvsp: ENSP00000356266.4:p.Arg962Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2885G>A
  hgvsp: ENSP00000356269.3:p.Arg962Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2885G>A
  hgvsp: ENSP00000356265.4:p.Arg962Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30760C>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2885G>A
  hgvsp: ENSP00000295624.6:p.Arg962Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2187G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.768G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1557G>A
  hgvsp: ENSP00000405437.1:p.Arg520Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1712G>A
  hgvsp: ENSP00000356264.1:p.Arg571Gln
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2924G>A
  hgvsp: ENSP00000356271.1:p.Arg975Gln
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg962Gln
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-201755603-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755603
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755603
    reference: chr 1
allele count: 4
allele frequency: 3.302946228035408e-5
allele num: 121104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1720C>T
  hgvsp: ENSP00000356264.1:p.His574Tyr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2893C>T
  hgvsp: ENSP00000295624.6:p.His965Tyr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2195C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30752G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.36C>T
  hgvsp: ENSP00000389123.1:p.His13Tyr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1565C>T
  hgvsp: ENSP00000405437.1:p.His523Tyr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2893C>T
  hgvsp: ENSP00000356265.4:p.His965Tyr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2893C>T
  hgvsp: ENSP00000356266.4:p.His965Tyr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2893C>T
  hgvsp: ENSP00000356269.3:p.His965Tyr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.776C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2932C>T
  hgvsp: ENSP00000356271.1:p.His978Tyr
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.His965Tyr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-201755608-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755608
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755608
    reference: chr 1
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.41C>T
  hgvsp: ENST00000438083.1:c.41C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1725C>T
  hgvsp: ENST00000367295.1:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.781C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2937C>T
  hgvsp: ENST00000367302.1:c.2937C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1570C>T
  hgvsp: ENST00000430015.1:c.1570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30747G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2898C>T
  hgvsp: ENST00000367296.4:c.2898C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2200C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2898C>T
  hgvsp: ENST00000367300.3:c.2898C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2898C>T
  hgvsp: ENST00000367297.4:c.2898C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2898C>T
  hgvsp: ENST00000295624.6:c.2898C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr966Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-201755613-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755613
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755613
    reference: chr 1
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2903G>A
  hgvsp: ENSP00000356265.4:p.Gly968Asp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2942G>A
  hgvsp: ENSP00000356271.1:p.Gly981Asp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1730G>A
  hgvsp: ENSP00000356264.1:p.Gly577Asp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2205G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30742C>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2903G>A
  hgvsp: ENSP00000356269.3:p.Gly968Asp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2903G>A
  hgvsp: ENSP00000295624.6:p.Gly968Asp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2903G>A
  hgvsp: ENSP00000356266.4:p.Gly968Asp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.786G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.46G>A
  hgvsp: ENSP00000389123.1:p.Gly16Asp
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1575G>A
  hgvsp: ENSP00000405437.1:p.Gly526Asp
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly968Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

1-201755629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755629
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755629
    reference: chr 1
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2919C>T
  hgvsp: ENST00000367296.4:c.2919C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2919C>T
  hgvsp: ENST00000367297.4:c.2919C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30726G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2958C>T
  hgvsp: ENST00000367302.1:c.2958C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1591C>T
  hgvsp: ENST00000430015.1:c.1591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2221C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.62C>T
  hgvsp: ENST00000438083.1:c.62C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1746C>T
  hgvsp: ENST00000367295.1:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2919C>T
  hgvsp: ENST00000295624.6:c.2919C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2919C>T
  hgvsp: ENST00000367300.3:c.2919C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.802C>T
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser973Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

1-201755630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755630
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755630
    reference: chr 1
allele count: 3
allele frequency: 2.473492406378312e-5
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2920G>A
  hgvsp: ENSP00000356266.4:p.Asp974Asn
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2920G>A
  hgvsp: ENSP00000356269.3:p.Asp974Asn
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2920G>A
  hgvsp: ENSP00000356265.4:p.Asp974Asn
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30725C>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2920G>A
  hgvsp: ENSP00000295624.6:p.Asp974Asn
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.803G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1747G>A
  hgvsp: ENSP00000356264.1:p.Asp583Asn
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.63G>A
  hgvsp: ENSP00000389123.1:p.Asp22Asn
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1592G>A
  hgvsp: ENSP00000405437.1:p.Asp532Asn
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2959G>A
  hgvsp: ENSP00000356271.1:p.Asp987Asn
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2222G>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp974Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/1-201755636-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755636
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755636
    reference: chr 1
allele count: 117
allele frequency: 9.645825089038385e-4
allele num: 121296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1598C>A
  hgvsp: ENSP00000405437.1:p.Gln534Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1753C>A
  hgvsp: ENSP00000356264.1:p.Gln585Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2926C>A
  hgvsp: ENSP00000356265.4:p.Gln976Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2926C>A
  hgvsp: ENSP00000356269.3:p.Gln976Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2926C>A
  hgvsp: ENSP00000356266.4:p.Gln976Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.809C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2965C>A
  hgvsp: ENSP00000356271.1:p.Gln989Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2926C>A
  hgvsp: ENSP00000295624.6:p.Gln976Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.69C>A
  hgvsp: ENSP00000389123.1:p.Gln24Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30719G>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2228C>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 9.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln976Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

1-201755640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755640
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755640
    reference: chr 1
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.73C>T
  hgvsp: ENSP00000389123.1:p.Ser25Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2969C>T
  hgvsp: ENSP00000356271.1:p.Ser990Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.813C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2930C>T
  hgvsp: ENSP00000295624.6:p.Ser977Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2930C>T
  hgvsp: ENSP00000356266.4:p.Ser977Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1757C>T
  hgvsp: ENSP00000356264.1:p.Ser586Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2930C>T
  hgvsp: ENSP00000356269.3:p.Ser977Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2232C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2930C>T
  hgvsp: ENSP00000356265.4:p.Ser977Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30715G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1602C>T
  hgvsp: ENSP00000405437.1:p.Ser535Leu
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser977Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

1-201755642-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755642
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755642
    reference: chr 1
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2932G>A
  hgvsp: ENSP00000295624.6:p.Glu978Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2971G>A
  hgvsp: ENSP00000356271.1:p.Glu991Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2932G>A
  hgvsp: ENSP00000356269.3:p.Glu978Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30713C>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2932G>A
  hgvsp: ENSP00000356266.4:p.Glu978Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1759G>A
  hgvsp: ENSP00000356264.1:p.Glu587Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2932G>A
  hgvsp: ENSP00000356265.4:p.Glu978Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1604G>A
  hgvsp: ENSP00000405437.1:p.Glu536Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.75G>A
  hgvsp: ENSP00000389123.1:p.Glu26Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.815G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2234G>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu978Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

1-201755647-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755647
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755647
    reference: chr 1
allele count: 3
allele frequency: 2.473247704001715e-5
allele num: 121298
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2937G>C
  hgvsp: ENST00000367296.4:c.2937G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2937G>C
  hgvsp: ENST00000295624.6:c.2937G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.80G>C
  hgvsp: ENST00000438083.1:c.80G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.820G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2937G>C
  hgvsp: ENST00000367300.3:c.2937G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2937G>C
  hgvsp: ENST00000367297.4:c.2937G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30708C>G
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2239G>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2976G>C
  hgvsp: ENST00000367302.1:c.2976G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1764G>C
  hgvsp: ENST00000367295.1:c.1764G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1609G>C
  hgvsp: ENST00000430015.1:c.1609G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu979Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

1-201755648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755648
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755648
    reference: chr 1
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30707G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2938C>T
  hgvsp: ENSP00000356266.4:p.Pro980Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2938C>T
  hgvsp: ENSP00000295624.6:p.Pro980Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.81C>T
  hgvsp: ENSP00000389123.1:p.Pro28Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1765C>T
  hgvsp: ENSP00000356264.1:p.Pro589Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.821C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2938C>T
  hgvsp: ENSP00000356269.3:p.Pro980Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2938C>T
  hgvsp: ENSP00000356265.4:p.Pro980Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2977C>T
  hgvsp: ENSP00000356271.1:p.Pro993Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2240C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1610C>T
  hgvsp: ENSP00000405437.1:p.Pro538Ser
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro980Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/1-201755657-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755657
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755657
    reference: chr 1
allele count: 67
allele frequency: 5.525135242116375e-4
allele num: 121264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2986C>A
  hgvsp: ENSP00000356271.1:p.Pro996Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1774C>A
  hgvsp: ENSP00000356264.1:p.Pro592Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1619C>A
  hgvsp: ENSP00000405437.1:p.Pro541Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2947C>A
  hgvsp: ENSP00000295624.6:p.Pro983Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.90C>A
  hgvsp: ENSP00000389123.1:p.Pro31Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2947C>A
  hgvsp: ENSP00000356269.3:p.Pro983Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2947C>A
  hgvsp: ENSP00000356266.4:p.Pro983Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2947C>A
  hgvsp: ENSP00000356265.4:p.Pro983Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30698G>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2249C>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.830C>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro983Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

1-201755657-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755657
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755657
    reference: chr 1
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2947C>T
  hgvsp: ENSP00000356266.4:p.Pro983Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2947C>T
  hgvsp: ENSP00000356265.4:p.Pro983Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.90C>T
  hgvsp: ENSP00000389123.1:p.Pro31Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1774C>T
  hgvsp: ENSP00000356264.1:p.Pro592Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.830C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1619C>T
  hgvsp: ENSP00000405437.1:p.Pro541Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2947C>T
  hgvsp: ENSP00000356269.3:p.Pro983Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2947C>T
  hgvsp: ENSP00000295624.6:p.Pro983Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2986C>T
  hgvsp: ENSP00000356271.1:p.Pro996Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2249C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30698G>A
  variant of: http://identifiers.org/hgnc/40892
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro983Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

1-201755661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755661
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755661
    reference: chr 1
allele count: 2
allele frequency: 1.649538953862396e-5
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2951C>T
  hgvsp: ENSP00000356269.3:p.Ala984Val
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1778C>T
  hgvsp: ENSP00000356264.1:p.Ala593Val
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2951C>T
  hgvsp: ENSP00000295624.6:p.Ala984Val
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2951C>T
  hgvsp: ENSP00000356265.4:p.Ala984Val
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.834C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.94C>T
  hgvsp: ENSP00000389123.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1623C>T
  hgvsp: ENSP00000405437.1:p.Ala542Val
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2990C>T
  hgvsp: ENSP00000356271.1:p.Ala997Val
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2253C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2951C>T
  hgvsp: ENSP00000356266.4:p.Ala984Val
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30694G>A
  variant of: http://identifiers.org/hgnc/40892
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5337
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala984Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-201755662-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755662
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755662
    reference: chr 1
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.835A>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1624A>C
  hgvsp: ENST00000430015.1:c.1624A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30693T>G
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1779A>C
  hgvsp: ENST00000367295.1:c.1779A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2952A>C
  hgvsp: ENST00000367297.4:c.2952A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.95A>C
  hgvsp: ENST00000438083.1:c.95A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2952A>C
  hgvsp: ENST00000295624.6:c.2952A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2952A>C
  hgvsp: ENST00000367296.4:c.2952A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2991A>C
  hgvsp: ENST00000367302.1:c.2991A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2952A>C
  hgvsp: ENST00000367300.3:c.2952A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2254A>C
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5335
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala984Ala
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

1-201755663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755663
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755663
    reference: chr 1
allele count: 8
allele frequency: 6.599679915524098e-5
allele num: 121218
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2953C>T
  hgvsp: ENSP00000356265.4:p.Leu985Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2255C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1625C>T
  hgvsp: ENSP00000405437.1:p.Leu543Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2953C>T
  hgvsp: ENSP00000356266.4:p.Leu985Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.96C>T
  hgvsp: ENSP00000389123.1:p.Leu33Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.836C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1780C>T
  hgvsp: ENSP00000356264.1:p.Leu594Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2992C>T
  hgvsp: ENSP00000356271.1:p.Leu998Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2953C>T
  hgvsp: ENSP00000295624.6:p.Leu985Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2953C>T
  hgvsp: ENSP00000356269.3:p.Leu985Phe
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30692G>A
  variant of: http://identifiers.org/hgnc/40892
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu985Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-201755667-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755667
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755667
    reference: chr 1
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2259C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2957C>T
  hgvsp: ENSP00000356269.3:p.Pro986Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2957C>T
  hgvsp: ENSP00000356265.4:p.Pro986Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2957C>T
  hgvsp: ENSP00000356266.4:p.Pro986Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.840C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2996C>T
  hgvsp: ENSP00000356271.1:p.Pro999Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1784C>T
  hgvsp: ENSP00000356264.1:p.Pro595Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1629C>T
  hgvsp: ENSP00000405437.1:p.Pro544Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2957C>T
  hgvsp: ENSP00000295624.6:p.Pro986Leu
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30688G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.100C>T
  hgvsp: ENSP00000389123.1:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro986Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

1-201755670-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755670
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755670
    reference: chr 1
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1632T>A
  hgvsp: ENSP00000405437.1:p.Met545Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.2999T>A
  hgvsp: ENSP00000356271.1:p.Met1000Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2960T>A
  hgvsp: ENSP00000356266.4:p.Met987Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.843T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2960T>A
  hgvsp: ENSP00000356265.4:p.Met987Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1787T>A
  hgvsp: ENSP00000356264.1:p.Met596Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2960T>A
  hgvsp: ENSP00000356269.3:p.Met987Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.103T>A
  hgvsp: ENSP00000389123.1:p.Met35Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30685A>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2262T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2960T>A
  hgvsp: ENSP00000295624.6:p.Met987Lys
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met987Lys
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

1-201755675-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755675
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755675
    reference: chr 1
allele count: 4
allele frequency: 3.303600925008259e-5
allele num: 121080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.3004C>T
  hgvsp: ENST00000367302.1:c.3004C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1637C>T
  hgvsp: ENST00000430015.1:c.1637C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2965C>T
  hgvsp: ENST00000295624.6:c.2965C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2965C>T
  hgvsp: ENST00000367296.4:c.2965C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2965C>T
  hgvsp: ENST00000367297.4:c.2965C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1792C>T
  hgvsp: ENST00000367295.1:c.1792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2267C>T
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.108C>T
  hgvsp: ENST00000438083.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2965C>T
  hgvsp: ENST00000367300.3:c.2965C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30680G>A
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.848C>T
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu989Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-201755687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755687
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755687
    reference: chr 1
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2977G>A
  hgvsp: ENSP00000356269.3:p.Gly993Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2977G>A
  hgvsp: ENSP00000356266.4:p.Gly993Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2977G>A
  hgvsp: ENSP00000356265.4:p.Gly993Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.3016G>A
  hgvsp: ENSP00000356271.1:p.Gly1006Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.120G>A
  hgvsp: ENSP00000389123.1:p.Gly41Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2279G>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000426436
  ensembl transcript: ENST00000477118
  gene symbol: NAV1
  hgvsc: ENST00000477118.2:c.10G>A
  hgvsp: ENSP00000426436.1:p.Gly4Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1649G>A
  hgvsp: ENSP00000405437.1:p.Gly551Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1804G>A
  hgvsp: ENSP00000356264.1:p.Gly602Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30668C>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2977G>A
  hgvsp: ENSP00000295624.6:p.Gly993Ser
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.860G>A
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly993Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

1-201755696-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755696
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755696
    reference: chr 1
allele count: 2
allele frequency: 1.665251203143994e-5
allele num: 120102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2288A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2986A>G
  hgvsp: ENSP00000356266.4:p.Thr996Ala
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2986A>G
  hgvsp: ENSP00000356265.4:p.Thr996Ala
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1813A>G
  hgvsp: ENSP00000356264.1:p.Thr605Ala
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.869A>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.129A>G
  hgvsp: ENSP00000389123.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2986A>G
  hgvsp: ENSP00000295624.6:p.Thr996Ala
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000426436
  ensembl transcript: ENST00000477118
  gene symbol: NAV1
  hgvsc: ENST00000477118.2:c.19A>G
  hgvsp: ENSP00000426436.1:p.Thr7Ala
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1658A>G
  hgvsp: ENSP00000405437.1:p.Thr554Ala
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.3025A>G
  hgvsp: ENSP00000356271.1:p.Thr1009Ala
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30659T>C
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2986A>G
  hgvsp: ENSP00000356269.3:p.Thr996Ala
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr996Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

1-201755698-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755698
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755698
    reference: chr 1
allele count: 2
allele frequency: 1.667556029882604e-5
allele num: 119936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1815C>G
  hgvsp: ENST00000367295.1:c.1815C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.131C>G
  hgvsp: ENST00000438083.1:c.131C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2988C>G
  hgvsp: ENST00000367296.4:c.2988C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000426436
  ensembl transcript: ENST00000477118
  gene symbol: NAV1
  hgvsc: ENST00000477118.2:c.21C>G
  hgvsp: ENST00000477118.2:c.21C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2988C>G
  hgvsp: ENST00000367297.4:c.2988C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2988C>G
  hgvsp: ENST00000295624.6:c.2988C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.3027C>G
  hgvsp: ENST00000367302.1:c.3027C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1660C>G
  hgvsp: ENST00000430015.1:c.1660C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2988C>G
  hgvsp: ENST00000367300.3:c.2988C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30657G>C
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2290C>G
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.871C>G
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr996Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

1-201755703-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755703
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755703
    reference: chr 1
allele count: 1
allele frequency: 8.36050497450046e-6
allele num: 119610
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2993T>A
  hgvsp: ENSP00000356265.4:p.Ile998Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1820T>A
  hgvsp: ENSP00000356264.1:p.Ile607Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000426436
  ensembl transcript: ENST00000477118
  gene symbol: NAV1
  hgvsc: ENST00000477118.2:c.26T>A
  hgvsp: ENSP00000426436.1:p.Ile9Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.136T>A
  hgvsp: ENSP00000389123.1:p.Ile46Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2295T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2993T>A
  hgvsp: ENSP00000356266.4:p.Ile998Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2993T>A
  hgvsp: ENSP00000295624.6:p.Ile998Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2993T>A
  hgvsp: ENSP00000356269.3:p.Ile998Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30652A>T
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1665T>A
  hgvsp: ENSP00000405437.1:p.Ile556Lys
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.876T>A
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.3032T>A
  hgvsp: ENSP00000356271.1:p.Ile1011Lys
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile998Lys
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

1-201755703-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755703
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755703
    reference: chr 1
allele count: 1
allele frequency: 8.36050497450046e-6
allele num: 119610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000426436
  ensembl transcript: ENST00000477118
  gene symbol: NAV1
  hgvsc: ENST00000477118.2:c.26T>C
  hgvsp: ENSP00000426436.1:p.Ile9Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2993T>C
  hgvsp: ENSP00000356269.3:p.Ile998Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.3032T>C
  hgvsp: ENSP00000356271.1:p.Ile1011Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2993T>C
  hgvsp: ENSP00000295624.6:p.Ile998Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.876T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1820T>C
  hgvsp: ENSP00000356264.1:p.Ile607Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.136T>C
  hgvsp: ENSP00000389123.1:p.Ile46Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30652A>G
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2295T>C
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2993T>C
  hgvsp: ENSP00000356266.4:p.Ile998Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1665T>C
  hgvsp: ENSP00000405437.1:p.Ile556Thr
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2993T>C
  hgvsp: ENSP00000356265.4:p.Ile998Thr
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile998Thr
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

1-201755730-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755730
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201755729
    reference: chr 1
allele count: 1
allele frequency: 8.474719910506958e-6
allele num: 117998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000389123
  ensembl transcript: ENST00000438083
  gene symbol: NAV1
  hgvsc: ENST00000438083.1:c.138+27delG
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356264
  ensembl transcript: ENST00000367295
  gene symbol: NAV1
  hgvsc: ENST00000367295.1:c.1822+27delG
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000469130
  gene symbol: NAV1
  hgvsc: ENST00000469130.1:n.878+27delG
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000405437
  ensembl transcript: ENST00000430015
  gene symbol: NAV1
  hgvsc: ENST00000430015.1:c.1667+27delG
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356271
  ensembl transcript: ENST00000367302
  gene symbol: NAV1
  hgvsc: ENST00000367302.1:c.3034+27delG
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231871
  ensembl transcript: ENST00000413035
  gene symbol: IPO9-AS1
  hgvsc: ENST00000413035.1:n.684+30624delC
  variant of: http://identifiers.org/hgnc/40892
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000426436
  ensembl transcript: ENST00000477118
  gene symbol: NAV1
  hgvsc: ENST00000477118.2:c.28+27delG
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356266
  ensembl transcript: ENST00000367297
  gene symbol: NAV1
  hgvsc: ENST00000367297.4:c.2995+27delG
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356265
  ensembl transcript: ENST00000367296
  gene symbol: NAV1
  hgvsc: ENST00000367296.4:c.2995+27delG
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl transcript: ENST00000490213
  gene symbol: NAV1
  hgvsc: ENST00000490213.1:n.2297+27delG
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000356269
  ensembl transcript: ENST00000367300
  gene symbol: NAV1
  hgvsc: ENST00000367300.3:c.2995+27delG
  variant of: http://identifiers.org/hgnc/15989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134369
  ensembl protein: ENSP00000295624
  ensembl transcript: ENST00000295624
  gene symbol: NAV1
  hgvsc: ENST00000295624.6:c.2995+27delG
  variant of: http://identifiers.org/hgnc/15989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6080
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: TG
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-201755731-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201755731
    reference: chr 1
allele count: 1
allele frequency: 8.476731372382808e-6
allele num: 117970
alternate allele: T
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 578
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3992
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9611
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26027
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 500
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.909304143862392e-4
allele num: 10232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

FS
type: SiteQuality
SIO_000300: 2.0566e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.919e0

QD
type: SiteQuality
SIO_000300: 4.8e0

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQ
type: SiteQuality
SIO_000300: 5.649e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 4.897743e6

VQSLOD
type: SiteQuality
SIO_000300: -2.122e0

GenotypeQuality
all individuals: 2791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9611
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3992
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26027
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.919e0

FS
type: SiteQuality
SIO_000300: 2.0566e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

QD
type: SiteQuality
SIO_000300: 4.8e0

MQ
type: SiteQuality
SIO_000300: 5.649e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 4.897743e6

VQSLOD
type: SiteQuality
SIO_000300: -2.122e0

GenotypeQuality
all individuals: 26027
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9611
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3992
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.773260359655981e-5
allele num: 10232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.649e1

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.122e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.919e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

FS
type: SiteQuality
SIO_000300: 2.0566e1

DP
type: SiteQuality
SIO_000300: 4.897743e6

QD
type: SiteQuality
SIO_000300: 4.8e0

GenotypeQuality
all individuals: 433
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26032
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3999
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3405
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5288
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 9
allele frequency: 8.816614420062696e-4
allele num: 10208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e0

DP
type: SiteQuality
SIO_000300: 4.897285e6

FS
type: SiteQuality
SIO_000300: 3.0195e1

MQ
type: SiteQuality
SIO_000300: 5.617e1

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.011e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10206
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26062
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5354
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2820
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.393e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e-1

QD
type: SiteQuality
SIO_000300: 6.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

FS
type: SiteQuality
SIO_000300: 7.989e0

DP
type: SiteQuality
SIO_000300: 4.893947e6

MQ
type: SiteQuality
SIO_000300: 5.716e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

GenotypeQuality
all individuals: 3409
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 377
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5354
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1448
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2299
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26062
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 204
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73190162798753e-4
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.933698415802855e-3
allele num: 10226
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 7.989e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.393e0

MQ
type: SiteQuality
SIO_000300: 5.716e1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

DP
type: SiteQuality
SIO_000300: 4.893947e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 6.55e0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2298
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 10188
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 351
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3414
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26094
bin: 9.75e1
variant carriers: 78

GenotypeQuality
all individuals: 2818
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4001
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.512363877023043e-5
allele num: 66484
num of homozygotes: 0

African
type: Population
allele count: 87
allele frequency: 8.627528758429195e-3
allele num: 10084
num of homozygotes: 3

South Asian
type: Population
allele count: 1
allele frequency: 6.092360180333861e-5
allele num: 16414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.202011444425178e-4
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

MQ
type: SiteQuality
SIO_000300: 5.735e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

QD
type: SiteQuality
SIO_000300: 7.66e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

FS
type: SiteQuality
SIO_000300: 1.953e0

DP
type: SiteQuality
SIO_000300: 4.884057e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25887
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 3404
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5329
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9728
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.060980398079073e-5
allele num: 66218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.171315724512466e-5
allele num: 16204
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.707767328456984e-5
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.067397146991937e-4
allele num: 9674
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

MQ
type: SiteQuality
SIO_000300: 5.854e1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

DP
type: SiteQuality
SIO_000300: 4.8696e6

FS
type: SiteQuality
SIO_000300: 6.131e0

QD
type: SiteQuality
SIO_000300: 4.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeQuality
all individuals: 4000
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5329
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9728
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 361
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3745
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 25887
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 320
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3404
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2824
bin: 7.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.741553465691397e-4
allele num: 11484
num of homozygotes: 0

African
type: Population
allele count: 44
allele frequency: 4.548273723382261e-3
allele num: 9674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.057114379775892e-4
allele num: 66218
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 4.8696e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.854e1

FS
type: SiteQuality
SIO_000300: 6.131e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

QD
type: SiteQuality
SIO_000300: 4.7e0

GenotypeQuality
all individuals: 664
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 785
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 899
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3479
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5762
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 979
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1214
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1751
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2646
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2437
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 892
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18657
bin: 9.75e1
variant carriers: 34

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.337416896989617e-5
allele num: 53548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13076
num of homozygotes: 0

African
type: Population
allele count: 45
allele frequency: 7.022471910112359e-3
allele num: 6408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7022
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.04e-2

QD
type: SiteQuality
SIO_000300: 4.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.64e0

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 1.2388e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.58e-1

MQ
type: SiteQuality
SIO_000300: 5.846e1

DP
type: SiteQuality
SIO_000300: 4.729175e6

GenotypeQuality
all individuals: 4449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7554
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33998
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3135
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.44e-1

MQ
type: SiteQuality
SIO_000300: 5.787e1

FS
type: SiteQuality
SIO_000300: 4.398e0

DP
type: SiteQuality
SIO_000300: 4.885345e6

MQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.243e1

VQSLOD
type: SiteQuality
SIO_000300: -6.036e-1

GenotypeQuality
all individuals: 4465
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3426
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7627
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2579
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3135
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2809
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.712e0

MQ
type: SiteQuality
SIO_000300: 5.665e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.935e-1

QD
type: SiteQuality
SIO_000300: 2.404e1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

DP
type: SiteQuality
SIO_000300: 4.886528e6

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3084
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36564
bin: 9.75e1
variant carriers: 5140

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7092
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2359
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 258
allele frequency: 1.563446854926676e-2
allele num: 16502
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 528
allele frequency: 7.983066223162988e-2
allele num: 6614
num of homozygotes: 25

Other
type: Population
allele count: 35
allele frequency: 3.854625550660793e-2
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 499
allele frequency: 4.806395684839145e-2
allele num: 10382
num of homozygotes: 13

European (Non-Finnish)
type: Population
allele count: 3749
allele frequency: 5.624399903984637e-2
allele num: 66656
num of homozygotes: 118

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 241
allele frequency: 2.083693584644648e-2
allele num: 11566
num of homozygotes: 2

DP
type: SiteQuality
SIO_000300: 5.231253e6

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 2.74e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.543e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7183
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36279
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2560
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3119
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500855162480871e-5
allele num: 66654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.371e1

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.153e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.87e-1

FS
type: SiteQuality
SIO_000300: 2.025e0

DP
type: SiteQuality
SIO_000300: 5.228753e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36283
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 1931
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999850007499625e-5
allele num: 66670
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.864e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

QD
type: SiteQuality
SIO_000300: 1.175e1

FS
type: SiteQuality
SIO_000300: 5.77e-1

DP
type: SiteQuality
SIO_000300: 5.2295e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.96e-1

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.230208e6

MQ
type: SiteQuality
SIO_000300: 5.884e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.868e0

VQSLOD
type: SiteQuality
SIO_000300: -2.444e0

QD
type: SiteQuality
SIO_000300: 2.781e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 22
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.874e1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

FS
type: SiteQuality
SIO_000300: 1.222e0

QD
type: SiteQuality
SIO_000300: 2.76e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

DP
type: SiteQuality
SIO_000300: 5.230688e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4167
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998410842253606e-5
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.148e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.943e0

MQ
type: SiteQuality
SIO_000300: 5.791e1

QD
type: SiteQuality
SIO_000300: 1.349e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.32e-1

FS
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 5.231694e6

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 3136
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049317943336831e-4
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.901e1

VQSLOD
type: SiteQuality
SIO_000300: -1.384e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.301e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

FS
type: SiteQuality
SIO_000300: 2.482e0

QD
type: SiteQuality
SIO_000300: 1.231e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.83e-1

DP
type: SiteQuality
SIO_000300: 5.232392e6

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.23235e6

FS
type: SiteQuality
SIO_000300: 5.1e-1

MQ
type: SiteQuality
SIO_000300: 5.844e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.436e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.018e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 17

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.693444807948625e-4
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.181e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.047e0

VQSLOD
type: SiteQuality
SIO_000300: -1.268e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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variant carriers: 22

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 7289
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
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allele num: 11578
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South Asian
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European (Non-Finnish)
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allele frequency: 2.997961386257345e-5
allele num: 66712
num of homozygotes: 0

African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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MQ
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MQRankSum
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QD
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ReadPosRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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South Asian
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European (Non-Finnish)
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allele num: 66714
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European (Finnish)
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DP
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66714
num of homozygotes: 0

African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.49902563333833e-5
allele num: 66710
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African
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Latino
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European (Finnish)
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South Asian
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East Asian
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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MQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 1.381931248920366e-3
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num of homozygotes: 0

East Asian
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African
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allele frequency: 8.653846153846154e-4
allele num: 10400
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European (Non-Finnish)
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allele frequency: 1.633986928104575e-3
allele num: 66708
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South Asian
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allele frequency: 1.818622696411251e-4
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Other
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allele num: 908
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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Latino
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DP
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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African
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South Asian
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QD
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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African
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e0

FS
type: SiteQuality
SIO_000300: 1.286e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 5.235299e6

MQ
type: SiteQuality
SIO_000300: 5.861e1

QD
type: SiteQuality
SIO_000300: 1.159e1

GenotypeQuality
all individuals: 75
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1933
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.25e1
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GenotypeQuality
all individuals: 36363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3988
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

MQ
type: SiteQuality
SIO_000300: 5.861e1

FS
type: SiteQuality
SIO_000300: 1.286e0

DP
type: SiteQuality
SIO_000300: 5.235299e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

GenotypeQuality
all individuals: 295
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36404
bin: 9.75e1
variant carriers: 60

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 1930
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 59
allele frequency: 3.578794128351328e-3
allele num: 16486
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

DP
type: SiteQuality
SIO_000300: 5.237093e6

FS
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

QD
type: SiteQuality
SIO_000300: 1.551e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e0

MQ
type: SiteQuality
SIO_000300: 5.824e1

GenotypeQuality
all individuals: 94
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2599
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
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variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 3579
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
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variant carriers: 0

GenotypeQuality
all individuals: 5561
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38572
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.35e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.789e0

MQ
type: SiteQuality
SIO_000300: 5.834e1

FS
type: SiteQuality
SIO_000300: 1.338e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 5.619077e6

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5561
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1758
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2599
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2829
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38572
bin: 9.75e1
variant carriers: 5361

African
type: Population
allele count: 1186
allele frequency: 1.140165352816766e-1
allele num: 10402
num of homozygotes: 75

South Asian
type: Population
allele count: 355
allele frequency: 2.154126213592233e-2
allele num: 16480
num of homozygotes: 11

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3303
allele frequency: 4.951727032861598e-2
allele num: 66704
num of homozygotes: 92

Other
type: Population
allele count: 43
allele frequency: 4.73568281938326e-2
allele num: 908
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 302
allele frequency: 4.566071968551557e-2
allele num: 6614
num of homozygotes: 6

Latino
type: Population
allele count: 371
allele frequency: 3.204353083434099e-2
allele num: 11578
num of homozygotes: 8

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 5.619077e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

MQ
type: SiteQuality
SIO_000300: 5.834e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

FS
type: SiteQuality
SIO_000300: 1.338e0

QD
type: SiteQuality
SIO_000300: 1.35e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.789e0

GenotypeQuality
all individuals: 2638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3639
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 356
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GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 38196
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variant carriers: 2

GenotypeQuality
all individuals: 2355
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 267
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.301e0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

DP
type: SiteQuality
SIO_000300: 5.596773e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
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GenotypeQuality
all individuals: 2638
bin: 8.25e1
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GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2170
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variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
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GenotypeQuality
all individuals: 281
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GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 451
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GenotypeQuality
all individuals: 260
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GenotypeQuality
all individuals: 1778
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5196
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 7.28e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.033e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 5.596707e6

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
all individuals: 306
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
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variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
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GenotypeQuality
all individuals: 963
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
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GenotypeQuality
all individuals: 703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536475938786798e-5
allele num: 65084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.759e0

QD
type: SiteQuality
SIO_000300: 1.095e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 1.316e1

DP
type: SiteQuality
SIO_000300: 3.738483e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

MQ
type: SiteQuality
SIO_000300: 5.9e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

GenotypeQuality
all individuals: 2065
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
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GenotypeQuality
all individuals: 97
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GenotypeQuality
all individuals: 1154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
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variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 283
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 752
bin: 3.25e1
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GenotypeQuality
all individuals: 1196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 613
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GenotypeQuality
all individuals: 49626
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variant carriers: 2

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536617597344725e-5
allele num: 65078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.24e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

DP
type: SiteQuality
SIO_000300: 3.739072e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.47e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 613
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variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65078
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735207357279195e-4
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11938
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 3.739072e6

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

VQSLOD
type: SiteQuality
SIO_000300: 5.24e0

QD
type: SiteQuality
SIO_000300: 1.348e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65338
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.750646e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 5.759e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e0

MQRankSum
type: SiteQuality
SIO_000300: -5.86e-1

QD
type: SiteQuality
SIO_000300: 1.613e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.054e0

GenotypeQuality
all individuals: 611
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.738740133106331e-5
allele num: 12922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.44e0

DP
type: SiteQuality
SIO_000300: 3.753848e6

VQSLOD
type: SiteQuality
SIO_000300: -9.534e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

QD
type: SiteQuality
SIO_000300: 1.846e1

FS
type: SiteQuality
SIO_000300: 8.273999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
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variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.543939898821605e-5
allele num: 66022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.781673e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.77e0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

FS
type: SiteQuality
SIO_000300: 5.39e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.308e1

GenotypeDepth
all individuals: 2818
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 49634
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015499668295036e-5
allele num: 66324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.364e1

DP
type: SiteQuality
SIO_000300: 3.796207e6

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

FS
type: SiteQuality
SIO_000300: 5.672e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

GenotypeDepth
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.99e1

MQRankSum
type: SiteQuality
SIO_000300: -6.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.64e-1

VQSLOD
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BaseQRankSum
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SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 3.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e0

DP
type: SiteQuality
SIO_000300: 3.809968e6

QD
type: SiteQuality
SIO_000300: 1.66e1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 931
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.003662233962717e-5
allele num: 66626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
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SIO_000300: -2.16e-1

DP
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ReadPosRankSum
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QD
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VQSLOD
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 616
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.106497313141182e-5
allele num: 16376
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.422e1

VQSLOD
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SIO_000300: 9.0e-1

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -5.29e-1

FS
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SIO_000300: 1.237e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 3.813048e6

GenotypeDepth
all individuals: 3011
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 2.3e0

InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: -5.11e-1

MQRankSum
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SIO_000300: -3.57e-1

ReadPosRankSum
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SIO_000300: 4.81e-1

FS
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SIO_000300: 1.816e0

VQSLOD
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SIO_000300: 7.75e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

DP
type: SiteQuality
SIO_000300: 3.813503e6

MQ
type: SiteQuality
SIO_000300: 5.989e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
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SIO_000300: 1.01e0

ClippingRankSum
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SIO_000300: -6.929999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

DP
type: SiteQuality
SIO_000300: 3.814215e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 941
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999670036296008e-5
allele num: 66674
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

FS
type: SiteQuality
SIO_000300: 5.946e0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-1

QD
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SIO_000300: 1.285e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 3.814288e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 117

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 99
allele frequency: 1.143979662583776e-2
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 16
allele frequency: 2.399592069348211e-4
allele num: 66678
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
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SIO_000300: 8.49e-1

MQRankSum
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DP
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InbreedingCoeff
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QD
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BaseQRankSum
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FS
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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QD
type: SiteQuality
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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Latino
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East Asian
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African
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FS
type: SiteQuality
SIO_000300: 8.96e-1

DP
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QD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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GenotypeDepth
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498830304120928e-5
allele num: 66684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.075e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.247e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.239e0

VQSLOD
type: SiteQuality
SIO_000300: 4.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.807669e6

GenotypeDepth
all individuals: 4692
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49622
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.807194e6

FS
type: SiteQuality
SIO_000300: 2.947e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.285e0

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

BaseQRankSum
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SIO_000300: 3.02e0

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.821e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 3.58e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeDepth
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 67

GenotypeQuality
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GenotypeQuality
all individuals: 941
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variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 52
allele frequency: 7.7989081528586e-4
allele num: 66676
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.825928180158247e-4
allele num: 16430
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.811364e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ReadPosRankSum
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SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.309e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.471e0

GenotypeDepth
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49624
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6007
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GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.811364e6

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.309e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.471e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

GenotypeDepth
all individuals: 4177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
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variant carriers: 0

GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 1200
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
all individuals: 941
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49614
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6012
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.803752e6

VQSLOD
type: SiteQuality
SIO_000300: 4.45e-1

FS
type: SiteQuality
SIO_000300: 1.754e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: -5.29e0

QD
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SIO_000300: 1.171e1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

ClippingRankSum
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SIO_000300: 1.76e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 614
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GenotypeQuality
all individuals: 6002
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

VQSLOD
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MQ
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SIO_000300: 5.975e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.98e-1

FS
type: SiteQuality
SIO_000300: 1.919e0

BaseQRankSum
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SIO_000300: 3.89e0

QD
type: SiteQuality
SIO_000300: 1.292e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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GenotypeQuality
all individuals: 976
bin: 8.25e1
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GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 5.765904285988853e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.187e0

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
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MQRankSum
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SIO_000300: 3.82e-1

VQSLOD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
SIO_000300: 1.34e1

DP
type: SiteQuality
SIO_000300: 3.803382e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

FS
type: SiteQuality
SIO_000300: 5.06e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.802459e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.645e0

GenotypeDepth
all individuals: 5644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49613
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 220
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

FS
type: SiteQuality
SIO_000300: 4.253e0

QD
type: SiteQuality
SIO_000300: 1.329e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 3.801445e6

GenotypeDepth
all individuals: 3985
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49612
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.003482019571351e-5
allele num: 66628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.364e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 3.800782e6

FS
type: SiteQuality
SIO_000300: 4.272e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.47e0

GenotypeDepth
all individuals: 5329
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 6078
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variant carriers: 0

GenotypeDepth
all individuals: 3653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 614
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
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variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503623733197005e-5
allele num: 66506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 9.756e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.085e0

VQSLOD
type: SiteQuality
SIO_000300: -1.641e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.947e0

DP
type: SiteQuality
SIO_000300: 3.793717e6

QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeDepth
all individuals: 1285
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6112
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variant carriers: 0

GenotypeDepth
all individuals: 4695
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 812
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variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 708
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variant carriers: 0

GenotypeQuality
all individuals: 965
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507113576079093e-5
allele num: 66352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.93e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.05e-1

DP
type: SiteQuality
SIO_000300: 3.783549e6

MQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.44e-1

FS
type: SiteQuality
SIO_000300: 5.357e0

QD
type: SiteQuality
SIO_000300: 1.551e1

GenotypeDepth
all individuals: 2822
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1410
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4262
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variant carriers: 0

GenotypeQuality
all individuals: 702
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variant carriers: 0

GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 611
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variant carriers: 0

GenotypeQuality
all individuals: 229
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 790
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 115
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variant carriers: 0

GenotypeQuality
all individuals: 1200
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 224
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variant carriers: 0

GenotypeQuality
all individuals: 423
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variant carriers: 0

GenotypeQuality
all individuals: 49612
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926040061633282e-4
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e-1

QD
type: SiteQuality
SIO_000300: 1.476e1

BaseQRankSum
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SIO_000300: -2.728e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

FS
type: SiteQuality
SIO_000300: 4.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 3.780994e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 5328
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 2822
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 1633
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 106
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GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 701
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49611
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 6.25e1
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GenotypeQuality
all individuals: 162
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GenotypeQuality
all individuals: 88
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GenotypeQuality
all individuals: 421
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GenotypeQuality
all individuals: 1200
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66254
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 3.773211e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.77e0

QD
type: SiteQuality
SIO_000300: 1.336e1

GenotypeDepth
all individuals: 1897
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variant carriers: 0

GenotypeDepth
all individuals: 6079
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variant carriers: 0

GenotypeDepth
all individuals: 1411
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variant carriers: 0

GenotypeDepth
all individuals: 5562
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GenotypeDepth
all individuals: 3653
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 307
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 701
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 421
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variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1200
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GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50934283213089e-5
allele num: 66254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15262
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.336e1

VQSLOD
type: SiteQuality
SIO_000300: 4.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 3.773211e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

GenotypeDepth
all individuals: 3653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49608
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 129
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2719
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.328e1

MQRankSum
type: SiteQuality
SIO_000300: 8.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

DP
type: SiteQuality
SIO_000300: 3.739063e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1